RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C MNN4P36044 1178 aa6.18□□□□□ -1.42
CAF4YKR036C RPC31P17890 251 aa6.17□□□□□ -1.42
CAF4YKR036C YLR419WQ06698 1435 aaKnown RBP6.17□□□□□ -1.42
CAF4YKR036C AAD16Q02895 342 aa6.17□□□□□ -1.42
CAF4YKR036C GCN2P15442 1659 aa6.16□□□□□ -1.42
CAF4YKR036C BCK1Q01389 1478 aa6.16□□□□□ -1.42
CAF4YKR036C LEU3P08638 886 aa6.15□□□□□ -1.42
CAF4YKR036C PAF1P38351 445 aa6.15□□□□□ -1.42
CAF4YKR036C PSD2P53037 1138 aaKnown RBP6.15□□□□□ -1.43
CAF4YKR036C EAF7P53911 425 aaKnown RBP6.15□□□□□ -1.43
CAF4YKR036C REB1P21538 810 aa6.14□□□□□ -1.43
CAF4YKR036C LEO1P38439 464 aa6.14□□□□□ -1.43
CAF4YKR036C ENT1Q12518 454 aa6.14□□□□□ -1.43
CAF4YKR036C PRI1P10363 409 aa6.13□□□□□ -1.43
CAF4YKR036C ALD4P46367 519 aaKnown RBP6.13□□□□□ -1.43
CAF4YKR036C CAB1Q04430 367 aa6.13□□□□□ -1.43
CAF4YKR036C YMR074CQ04773 145 aa6.13□□□□□ -1.43
CAF4YKR036C RAV1P47104 1357 aa6.13□□□□□ -1.43
CAF4YKR036C SNF7P39929 240 aaKnown RBP6.12□□□□□ -1.43
CAF4YKR036C ENV9Q08651 330 aa6.11□□□□□ -1.43
CAF4YKR036C RAD9P14737 1309 aa6.11□□□□□ -1.43
CAF4YKR036C RTC1Q08281 1341 aa6.09□□□□□ -1.43
CAF4YKR036C IMH1Q06704 911 aaKnown RBP6.09□□□□□ -1.44
CAF4YKR036C NUP192P47054 1683 aa6.09□□□□□ -1.44
CAF4YKR036C YCK3P39962 524 aa6.08□□□□□ -1.44
CAF4YKR036C TY3B-IQ7LHG5 1498 aaKnown RBP6.08□□□□□ -1.44
CAF4YKR036C QCR6P00127 147 aa6.07□□□□□ -1.44
CAF4YKR036C YIR014WP40570 242 aa6.07□□□□□ -1.44
CAF4YKR036C HAA1Q12753 694 aaKnown RBP6.07□□□□□ -1.44
CAF4YKR036C NAP1P25293 417 aaKnown RBP6.07□□□□□ -1.44
CAF4YKR036C ROX1P25042 368 aa6.06□□□□□ -1.44
CAF4YKR036C FUN12P39730 1002 aaKnown RBP6.06□□□□□ -1.44
CAF4YKR036C FPR3P38911 411 aaKnown RBP6.05□□□□□ -1.44
CAF4YKR036C YGR130CP53278 816 aa6.05□□□□□ -1.44
CAF4YKR036C RLF2Q12495 606 aa6.05□□□□□ -1.44
CAF4YKR036C AIM44Q99299 758 aa6.05□□□□□ -1.44
CAF4YKR036C TAF5P38129 798 aa6.04□□□□□ -1.44
CAF4YKR036C RPS0BP46654 252 aaKnown RBP6.04□□□□□ -1.44
CAF4YKR036C NOP7P53261 605 aaKnown RBP6.04□□□□□ -1.44
CAF4YKR036C MHP1P43638 1398 aa6.04□□□□□ -1.44
CAF4YKR036C BUD31P25337 157 aaPredicted RBP6.03□□□□□ -1.44
CAF4YKR036C PRP45P28004 379 aaPredicted RBP6.03□□□□□ -1.44
CAF4YKR036C CPS1P27614 576 aa6.02□□□□□ -1.45
CAF4YKR036C SLN1P39928 1220 aaPredicted RBP6.02□□□□□ -1.45
CAF4YKR036C CWC22P53333 577 aaKnown RBP6.02□□□□□ -1.45
CAF4YKR036C ESL2P36168 1195 aa6.01□□□□□ -1.45
CAF4YKR036C TAF8Q03750 510 aa6.01□□□□□ -1.45
CAF4YKR036C NOP53Q12080 455 aaKnown RBP6.01□□□□□ -1.45
CAF4YKR036C RRP5Q05022 1729 aaKnown RBP6.01□□□□□ -1.45
CAF4YKR036C RCM1P53972 490 aa6□□□□□ -1.45
CAF4YKR036C PRP5P21372 849 aaPredicted RBP5.99□□□□□ -1.45
CAF4YKR036C UBP1P25037 809 aa5.99□□□□□ -1.45
CAF4YKR036C CTR9P89105 1077 aa5.99□□□□□ -1.45
CAF4YKR036C YRF1-2P40105 1681 aa5.98□□□□□ -1.45
CAF4YKR036C SPT21P35209 758 aa5.97□□□□□ -1.45
CAF4YKR036C PPH3P32345 308 aa5.96□□□□□ -1.46
CAF4YKR036C DJP1P40564 432 aa5.96□□□□□ -1.46
CAF4YKR036C NOT3P06102 836 aaKnown RBP5.95□□□□□ -1.46
CAF4YKR036C NUG1P40010 520 aaKnown RBP5.95□□□□□ -1.46
CAF4YKR036C NOP58Q12499 511 aaKnown RBP5.95□□□□□ -1.46
CAF4YKR036C RPN11P43588 306 aaKnown RBP5.95□□□□□ -1.46
CAF4YKR036C ENV11P53246 860 aa5.95□□□□□ -1.46
CAF4YKR036C NST1P53935 1240 aa5.95□□□□□ -1.46
CAF4YKR036C RVB2Q12464 471 aaKnown RBP5.95□□□□□ -1.46
CAF4YKR036C PCT1P13259 424 aa5.94□□□□□ -1.46
CAF4YKR036C IES2P40154 320 aa5.94□□□□□ -1.46
CAF4YKR036C MSB3P48566 633 aaPredicted RBP5.94□□□□□ -1.46
CAF4YKR036C ORC1P54784 914 aaPredicted RBP5.94□□□□□ -1.46
CAF4YKR036C CDC45Q08032 650 aa5.94□□□□□ -1.46
CAF4YKR036C DOT5P40553 215 aa5.93□□□□□ -1.46
CAF4YKR036C MSP1P28737 362 aa5.93□□□□□ -1.46
CAF4YKR036C YBL086CP38177 466 aa5.93□□□□□ -1.46
CAF4YKR036C GTT3P39996 337 aa5.93□□□□□ -1.46
CAF4YKR036C ADE6P38972 1358 aaKnown RBP5.93□□□□□ -1.46
CAF4YKR036C RPP0P05317 312 aaKnown RBP5.92□□□□□ -1.46
CAF4YKR036C UGA2P38067 497 aa5.92□□□□□ -1.46
CAF4YKR036C VPS27P40343 622 aaKnown RBP5.92□□□□□ -1.46
CAF4YKR036C PDS5Q04264 1277 aa5.92□□□□□ -1.46
CAF4YKR036C TCB1Q12466 1186 aa5.92□□□□□ -1.46
CAF4YKR036C PSK1P31374 1356 aa5.92□□□□□ -1.46
CAF4YKR036C EDE1P34216 1381 aa5.92□□□□□ -1.46
CAF4YKR036C KNS1P32350 737 aaPredicted RBP5.91□□□□□ -1.46
CAF4YKR036C YEF3P16521 1044 aaKnown RBP5.91□□□□□ -1.46
CAF4YKR036C VPS24P36095 224 aaKnown RBP5.91□□□□□ -1.46
CAF4YKR036C YPP1P46951 817 aa5.91□□□□□ -1.46
CAF4YKR036C YJL181WP46987 611 aa5.91□□□□□ -1.46
CAF4YKR036C ROM2P51862 1356 aaKnown RBP5.9□□□□□ -1.46
CAF4YKR036C TY4B-HP0C2J7 1802 aa5.9□□□□□ -1.46
CAF4YKR036C TY4B-JP47024 1803 aa5.9□□□□□ -1.46
CAF4YKR036C SPE2P21182 396 aa5.89□□□□□ -1.47
CAF4YKR036C ALD2P47771 506 aa5.89□□□□□ -1.47
CAF4YKR036C FOX2Q02207 900 aaKnown RBP5.89□□□□□ -1.47
CAF4YKR036C SLM3Q12093 417 aa5.89□□□□□ -1.47
CAF4YKR036C URB1P34241 1764 aaKnown RBP5.89□□□□□ -1.47
CAF4YKR036C RSF2P46974 1380 aa5.89□□□□□ -1.47
CAF4YKR036C ARL1P38116 183 aaKnown RBP5.89□□□□□ -1.47
CAF4YKR036C NPR2P39923 615 aa5.89□□□□□ -1.47
CAF4YKR036C PRP43P53131 767 aaKnown RBP5.89□□□□□ -1.47
CAF4YKR036C LEU2P04173 364 aaPredicted RBP5.88□□□□□ -1.47
CAF4YKR036C RAD26P40352 1085 aa5.88□□□□□ -1.47
Retrieved 100 of 5,963 RNA–protein pairs in 30.6 ms