RNA–Protein interactions for RNA: YHR150W

PEX28, Transcript of Peroxisomal integral membrane peroxin, yeastyeast

Gene PEX28, Length 1,740 nt, Biotype protein coding, Subcellular localisation Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEX28YHR150W TFA1P36100 482 aa9.6□□□□□ -0.87
PEX28YHR150W RCM1P53972 490 aa9.6□□□□□ -0.87
PEX28YHR150W HAP1P0CE41 1502 aa9.6□□□□□ -0.87
PEX28YHR150W FKH1P40466 484 aa9.59□□□□□ -0.87
PEX28YHR150W VPS27P40343 622 aaKnown RBP9.58□□□□□ -0.88
PEX28YHR150W CDC45Q08032 650 aa9.58□□□□□ -0.88
PEX28YHR150W RPP0P05317 312 aaKnown RBP9.56□□□□□ -0.88
PEX28YHR150W FAP1P53971 965 aa9.56□□□□□ -0.88
PEX28YHR150W RVB2Q12464 471 aaKnown RBP9.56□□□□□ -0.88
PEX28YHR150W TRK1P12685 1235 aa9.54□□□□□ -0.88
PEX28YHR150W YNR029CP53729 429 aaKnown RBP9.54□□□□□ -0.88
PEX28YHR150W YDL144CQ07589 356 aa9.54□□□□□ -0.88
PEX28YHR150W PPH3P32345 308 aa9.53□□□□□ -0.88
PEX28YHR150W YEF3P16521 1044 aaKnown RBP9.52□□□□□ -0.89
PEX28YHR150W RPC31P17890 251 aa9.51□□□□□ -0.89
PEX28YHR150W CPS1P27614 576 aa9.5□□□□□ -0.89
PEX28YHR150W LEU2P04173 364 aaPredicted RBP9.49□□□□□ -0.89
PEX28YHR150W FPR3P38911 411 aaKnown RBP9.49□□□□□ -0.89
PEX28YHR150W PSK1P31374 1356 aa9.49□□□□□ -0.89
PEX28YHR150W SUI2P20459 304 aaKnown RBP9.48□□□□□ -0.89
PEX28YHR150W MPP10P47083 593 aaKnown RBP9.48□□□□□ -0.89
PEX28YHR150W KAR2P16474 682 aaKnown RBP9.47□□□□□ -0.89
PEX28YHR150W YMR196WQ04336 1088 aa9.47□□□□□ -0.89
PEX28YHR150W YML133CQ03099 1374 aa9.47□□□□□ -0.89
PEX28YHR150W YLL067CQ07888 1374 aa9.47□□□□□ -0.89
PEX28YHR150W YLL066CQ99208 1374 aa9.47□□□□□ -0.89
PEX28YHR150W IOC4Q04213 475 aa9.46□□□□□ -0.89
PEX28YHR150W SNF2P22082 1703 aa9.46□□□□□ -0.9
PEX28YHR150W PDI1P17967 522 aaKnown RBP9.45□□□□□ -0.9
PEX28YHR150W MTR4P47047 1073 aaKnown RBP9.45□□□□□ -0.9
PEX28YHR150W PAP2P53632 584 aaKnown RBP9.45□□□□□ -0.9
PEX28YHR150W RTF1P53064 558 aa9.45□□□□□ -0.9
PEX28YHR150W CSE4P36012 229 aa9.44□□□□□ -0.9
PEX28YHR150W YRB30P53107 440 aaPredicted RBP9.43□□□□□ -0.9
PEX28YHR150W THI12P42883 340 aa9.42□□□□□ -0.9
PEX28YHR150W THI5P43534 340 aa9.42□□□□□ -0.9
PEX28YHR150W THI11P47183 340 aa9.42□□□□□ -0.9
PEX28YHR150W THI13Q07748 340 aa9.42□□□□□ -0.9
PEX28YHR150W DIP2Q12220 943 aaPredicted RBP9.42□□□□□ -0.9
PEX28YHR150W RPS24AP0CX31 135 aaKnown RBP9.42□□□□□ -0.9
PEX28YHR150W RPS24BP0CX32 135 aaKnown RBP9.42□□□□□ -0.9
PEX28YHR150W RRP46P53256 223 aaPredicted RBP9.42□□□□□ -0.9
PEX28YHR150W HIM1Q06674 414 aa9.42□□□□□ -0.9
PEX28YHR150W RTR1P40084 226 aaPredicted RBP9.41□□□□□ -0.9
PEX28YHR150W YFR016CP43597 1233 aaKnown RBP9.41□□□□□ -0.9
PEX28YHR150W TAP42Q04372 366 aa9.4□□□□□ -0.9
PEX28YHR150W GAS4Q08271 471 aa9.4□□□□□ -0.9
PEX28YHR150W TY1B-NL2Q99337 1749 aaKnown RBP9.4□□□□□ -0.91
PEX28YHR150W IME2P32581 645 aa9.39□□□□□ -0.91
PEX28YHR150W GRX4P32642 244 aa9.39□□□□□ -0.91
PEX28YHR150W OPY1P38271 328 aa9.39□□□□□ -0.91
PEX28YHR150W SAP155P43612 1002 aa9.39□□□□□ -0.91
PEX28YHR150W USO1P25386 1790 aa9.39□□□□□ -0.91
PEX28YHR150W MIF2P35201 549 aa9.38□□□□□ -0.91
PEX28YHR150W NAB6Q03735 1134 aaKnown RBP RIP-Chip data9.38□□□□□ -0.91not detected
PEX28YHR150W DPS1P04802 557 aaKnown RBP9.36□□□□□ -0.91
PEX28YHR150W TPD3P31383 635 aa9.35□□□□□ -0.91
PEX28YHR150W RAD2P07276 1031 aa9.34□□□□□ -0.91
PEX28YHR150W THI22Q06490 572 aa9.34□□□□□ -0.92
PEX28YHR150W DAL5P15365 543 aa9.33□□□□□ -0.92
PEX28YHR150W PRD1P25375 712 aa9.33□□□□□ -0.92
PEX28YHR150W ADE6P38972 1358 aaKnown RBP9.32□□□□□ -0.92
PEX28YHR150W AUS1Q08409 1394 aa9.32□□□□□ -0.92
PEX28YHR150W PRP43P53131 767 aaKnown RBP9.32□□□□□ -0.92
PEX28YHR150W BUB1P41695 1021 aaKnown RBP RIP-Chip data9.31□□□□□ -0.92not detected
PEX28YHR150W YIL092WP40497 633 aa9.3□□□□□ -0.92
PEX28YHR150W EAF7P53911 425 aaKnown RBP9.29□□□□□ -0.92
PEX28YHR150W HEF3P53978 1044 aaKnown RBP9.29□□□□□ -0.92
PEX28YHR150W CLC1P17891 233 aa9.28□□□□□ -0.92
PEX28YHR150W PRP45P28004 379 aaPredicted RBP9.28□□□□□ -0.92
PEX28YHR150W YPR148CQ06523 435 aa9.28□□□□□ -0.92
PEX28YHR150W YIR014WP40570 242 aa9.27□□□□□ -0.93
PEX28YHR150W BUD27P43573 796 aaKnown RBP RIP-Chip data9.27□□□□□ -0.93not detected
PEX28YHR150W POL32P47110 350 aa9.27□□□□□ -0.93
PEX28YHR150W RTT109Q07794 436 aa9.27□□□□□ -0.93
PEX28YHR150W RPO41P13433 1351 aaKnown RBP9.27□□□□□ -0.93
PEX28YHR150W PRP5P21372 849 aaPredicted RBP9.26□□□□□ -0.93
PEX28YHR150W AKL1P38080 1108 aaKnown RBP9.25□□□□□ -0.93
PEX28YHR150W PUF6Q04373 656 aaKnown RBP9.22□□□□□ -0.93
PEX28YHR150W AVT3P36062 692 aa9.22□□□□□ -0.93
PEX28YHR150W MAK21Q12176 1025 aaKnown RBP9.22□□□□□ -0.93
PEX28YHR150W MSB3P48566 633 aaPredicted RBP9.21□□□□□ -0.94
PEX28YHR150W DSD1P53095 428 aa9.21□□□□□ -0.94
PEX28YHR150W SIR4P11978 1358 aa9.2□□□□□ -0.94
PEX28YHR150W HSP104P31539 908 aaKnown RBP9.2□□□□□ -0.94
PEX28YHR150W SLM3Q12093 417 aa9.19□□□□□ -0.94
PEX28YHR150W PCT1P13259 424 aa9.19□□□□□ -0.94
PEX28YHR150W PTP3P40048 928 aa9.19□□□□□ -0.94
PEX28YHR150W SNF7P39929 240 aaKnown RBP9.18□□□□□ -0.94
PEX28YHR150W ZDS1P50111 915 aaKnown RBP9.18□□□□□ -0.94
PEX28YHR150W TCB1Q12466 1186 aa9.18□□□□□ -0.94
PEX28YHR150W YBR287WP38355 427 aa9.17□□□□□ -0.94
PEX28YHR150W RRT14P40470 206 aa9.17□□□□□ -0.94
PEX28YHR150W XKS1P42826 600 aa9.17□□□□□ -0.94
PEX28YHR150W YNL050CP53952 270 aa9.17□□□□□ -0.94
PEX28YHR150W TY4B-HP0C2J7 1802 aa9.16□□□□□ -0.94
PEX28YHR150W TY4B-JP47024 1803 aa9.16□□□□□ -0.94
PEX28YHR150W NTH2P35172 780 aa9.16□□□□□ -0.94
PEX28YHR150W DJP1P40564 432 aa9.16□□□□□ -0.94
PEX28YHR150W YFR006WP43590 535 aa9.16□□□□□ -0.94
Retrieved 100 of 5,963 RNA–protein pairs in 9.9 ms