RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeastyeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSH1YHR120W CPS1P27614 576 aa6.95□□□□□ -1.3
MSH1YHR120W RCM1P53972 490 aa6.95□□□□□ -1.3
MSH1YHR120W RRP5Q05022 1729 aaKnown RBP6.95□□□□□ -1.3
MSH1YHR120W YIL055CP40523 627 aaKnown RBP6.94□□□□□ -1.3
MSH1YHR120W PPH3P32345 308 aa6.93□□□□□ -1.3
MSH1YHR120W ENT1Q12518 454 aa6.93□□□□□ -1.3
MSH1YHR120W TY4B-HP0C2J7 1802 aa6.92□□□□□ -1.3
MSH1YHR120W TY4B-JP47024 1803 aa6.92□□□□□ -1.3
MSH1YHR120W GLN1P32288 370 aaKnown RBP6.92□□□□□ -1.3
MSH1YHR120W YRF1-2P40105 1681 aa6.92□□□□□ -1.3
MSH1YHR120W SPE2P21182 396 aa6.9□□□□□ -1.3
MSH1YHR120W KIP3P53086 805 aaKnown RBP6.9□□□□□ -1.3
MSH1YHR120W ENV9Q08651 330 aa6.9□□□□□ -1.3
MSH1YHR120W PSK1P31374 1356 aa6.9□□□□□ -1.3
MSH1YHR120W YLR419WQ06698 1435 aaKnown RBP6.88□□□□□ -1.31
MSH1YHR120W ADE6P38972 1358 aaKnown RBP6.88□□□□□ -1.31
MSH1YHR120W PRP45P28004 379 aaPredicted RBP6.88□□□□□ -1.31
MSH1YHR120W IMH1Q06704 911 aaKnown RBP6.87□□□□□ -1.31
MSH1YHR120W ISW2Q08773 1120 aa6.86□□□□□ -1.31
MSH1YHR120W PRP5P21372 849 aaPredicted RBP6.84□□□□□ -1.31
MSH1YHR120W YMR074CQ04773 145 aa6.84□□□□□ -1.31
MSH1YHR120W ORC1P54784 914 aaPredicted RBP6.84□□□□□ -1.31
MSH1YHR120W NSR1P27476 414 aaKnown RBP RIP-Chip data6.83□□□□□ -1.32not detected
MSH1YHR120W CHZ1P40019 153 aaPredicted RBP6.83□□□□□ -1.32
MSH1YHR120W MSB3P48566 633 aaPredicted RBP6.82□□□□□ -1.32
MSH1YHR120W YML133CQ03099 1374 aa6.81□□□□□ -1.32
MSH1YHR120W YLL067CQ07888 1374 aa6.81□□□□□ -1.32
MSH1YHR120W YLL066CQ99208 1374 aa6.81□□□□□ -1.32
MSH1YHR120W PRP43P53131 767 aaKnown RBP6.81□□□□□ -1.32
MSH1YHR120W URB1P34241 1764 aaKnown RBP6.8□□□□□ -1.32
MSH1YHR120W LEU2P04173 364 aaPredicted RBP6.8□□□□□ -1.32
MSH1YHR120W MTR4P47047 1073 aaKnown RBP6.8□□□□□ -1.32
MSH1YHR120W CSE4P36012 229 aa6.79□□□□□ -1.32
MSH1YHR120W YIL177CP40434 1758 aa6.79□□□□□ -1.32
MSH1YHR120W YJL225CP40889 1758 aa6.79□□□□□ -1.32
MSH1YHR120W RPS24AP0CX31 135 aaKnown RBP6.78□□□□□ -1.32
MSH1YHR120W RPS24BP0CX32 135 aaKnown RBP6.78□□□□□ -1.32
MSH1YHR120W FKS3Q04952 1785 aa6.78□□□□□ -1.32
MSH1YHR120W RSF2P46974 1380 aa6.77□□□□□ -1.33
MSH1YHR120W SLM3Q12093 417 aa6.77□□□□□ -1.33
MSH1YHR120W BUD31P25337 157 aaPredicted RBP6.77□□□□□ -1.33
MSH1YHR120W TCB1Q12466 1186 aa6.77□□□□□ -1.33
MSH1YHR120W SCT1P32784 759 aa6.76□□□□□ -1.33
MSH1YHR120W POL5P39985 1022 aaKnown RBP6.76□□□□□ -1.33
MSH1YHR120W RPG1P38249 964 aaKnown RBP6.76□□□□□ -1.33
MSH1YHR120W IES2P40154 320 aa6.76□□□□□ -1.33
MSH1YHR120W NOP2P40991 618 aaKnown RBP6.76□□□□□ -1.33
MSH1YHR120W LEU3P08638 886 aa6.75□□□□□ -1.33
MSH1YHR120W YRF1-3P0CX14 1859 aa6.74□□□□□ -1.33
MSH1YHR120W YRF1-7P0CX15 1859 aa6.74□□□□□ -1.33
MSH1YHR120W YRF1-6P53819 1859 aa6.74□□□□□ -1.33
MSH1YHR120W ENP1P38333 483 aaKnown RBP6.74□□□□□ -1.33
MSH1YHR120W FKH1P40466 484 aa6.74□□□□□ -1.33
MSH1YHR120W DOT5P40553 215 aa6.74□□□□□ -1.33
MSH1YHR120W APC1P53886 1748 aa6.74□□□□□ -1.33
MSH1YHR120W SEC3P33332 1336 aaKnown RBP6.74□□□□□ -1.33
MSH1YHR120W ROM2P51862 1356 aaKnown RBP6.74□□□□□ -1.33
MSH1YHR120W MLP1Q02455 1875 aaKnown RBP6.73□□□□□ -1.33
MSH1YHR120W FOX2Q02207 900 aaKnown RBP6.71□□□□□ -1.33
MSH1YHR120W XKS1P42826 600 aa6.71□□□□□ -1.34
MSH1YHR120W RPN11P43588 306 aaKnown RBP6.71□□□□□ -1.34
MSH1YHR120W RTG3P38165 486 aa6.71□□□□□ -1.34
MSH1YHR120W UBP1P25037 809 aa6.7□□□□□ -1.34
MSH1YHR120W EDE1P34216 1381 aa6.69□□□□□ -1.34
MSH1YHR120W PDI1P17967 522 aaKnown RBP6.69□□□□□ -1.34
MSH1YHR120W TSR3Q12094 313 aaKnown RBP6.69□□□□□ -1.34
MSH1YHR120W MHP1P43638 1398 aa6.69□□□□□ -1.34
MSH1YHR120W DPS1P04802 557 aaKnown RBP6.69□□□□□ -1.34
MSH1YHR120W GAS4Q08271 471 aa6.69□□□□□ -1.34
MSH1YHR120W YKL133CP36066 463 aa6.68□□□□□ -1.34
MSH1YHR120W AUS1Q08409 1394 aa6.68□□□□□ -1.34
MSH1YHR120W RTF1P53064 558 aa6.68□□□□□ -1.34
MSH1YHR120W YEF3P16521 1044 aaKnown RBP6.67□□□□□ -1.34
MSH1YHR120W NPR2P39923 615 aa6.67□□□□□ -1.34
MSH1YHR120W SNF2P22082 1703 aa6.66□□□□□ -1.34
MSH1YHR120W TAP42Q04372 366 aa6.66□□□□□ -1.34
MSH1YHR120W SIR4P11978 1358 aa6.66□□□□□ -1.34
MSH1YHR120W PDS5Q04264 1277 aa6.66□□□□□ -1.34
MSH1YHR120W YRF1-4O13559 1382 aa6.65□□□□□ -1.34
MSH1YHR120W COBP00163 385 aa6.65□□□□□ -1.34
MSH1YHR120W YKR075CP36155 307 aa6.65□□□□□ -1.34
MSH1YHR120W GRX4P32642 244 aa6.64□□□□□ -1.35
MSH1YHR120W YJL181WP46987 611 aa6.64□□□□□ -1.35
MSH1YHR120W HIM1Q06674 414 aa6.64□□□□□ -1.35
MSH1YHR120W LAM6Q08001 693 aa6.64□□□□□ -1.35
MSH1YHR120W YBL086CP38177 466 aa6.64□□□□□ -1.35
MSH1YHR120W RCR1P38212 213 aa6.64□□□□□ -1.35
MSH1YHR120W PRP40P33203 583 aaKnown RBP6.63□□□□□ -1.35
MSH1YHR120W LYS4P49367 693 aaPredicted RBP6.63□□□□□ -1.35
MSH1YHR120W FRK1Q03002 865 aaPredicted RBP6.63□□□□□ -1.35
MSH1YHR120W ADE16P54113 591 aaKnown RBP6.62□□□□□ -1.35
MSH1YHR120W MEC3Q02574 474 aa6.62□□□□□ -1.35
MSH1YHR120W GTT3P39996 337 aa6.61□□□□□ -1.35
MSH1YHR120W SPT7P35177 1332 aa6.61□□□□□ -1.35
MSH1YHR120W CTH1P47976 325 aa6.6□□□□□ -1.35
MSH1YHR120W RPO41P13433 1351 aaKnown RBP6.6□□□□□ -1.35
MSH1YHR120W RIM15P43565 1770 aa6.59□□□□□ -1.35
MSH1YHR120W KAR2P16474 682 aaKnown RBP6.59□□□□□ -1.35
MSH1YHR120W UGA2P38067 497 aa6.59□□□□□ -1.35
MSH1YHR120W ALD2P47771 506 aa6.59□□□□□ -1.35
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms