RNA–Protein interactions for RNA: YER118C

SHO1, Transcript of Transmembrane osmosensor for filamentous growth and HOG pathways, yeastyeast

Gene SHO1, Length 1,104 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHO1YER118C RRP14P36080 434 aaKnown RBP8.56□□□□□ -1.04
SHO1YER118C TPO2P53283 614 aa8.56□□□□□ -1.04
SHO1YER118C YHL050CP38721 697 aa8.55□□□□□ -1.04
SHO1YER118C YHR219WP38900 624 aa8.55□□□□□ -1.04
SHO1YER118C FPR3P38911 411 aaKnown RBP8.55□□□□□ -1.04
SHO1YER118C PKH3Q03306 898 aaPredicted RBP8.55□□□□□ -1.04
SHO1YER118C BUD21Q08492 214 aaPredicted RBP8.55□□□□□ -1.04
SHO1YER118C GIN4Q12263 1142 aa8.55□□□□□ -1.04
SHO1YER118C YEL077CQ3E7X8 1277 aa8.55□□□□□ -1.04
SHO1YER118C SPT5P27692 1063 aaKnown RBP8.54□□□□□ -1.04
SHO1YER118C RIM21P48565 533 aa8.54□□□□□ -1.04
SHO1YER118C HST2P53686 357 aa8.54□□□□□ -1.04
SHO1YER118C OYE2Q03558 400 aaKnown RBP8.54□□□□□ -1.04
SHO1YER118C MAG2Q06436 670 aaKnown RBP8.54□□□□□ -1.04
SHO1YER118C DBP1P24784 617 aaKnown RBP8.53□□□□□ -1.04
SHO1YER118C PPG1P32838 368 aa8.53□□□□□ -1.04
SHO1YER118C PPX1P38698 397 aa8.53□□□□□ -1.04
SHO1YER118C YFR006WP43590 535 aa8.53□□□□□ -1.04
SHO1YER118C JIP5Q06214 492 aaPredicted RBP8.53□□□□□ -1.04
SHO1YER118C YDJ1P25491 409 aaKnown RBP8.52□□□□□ -1.05
SHO1YER118C SEC8P32855 1065 aa8.52□□□□□ -1.05
SHO1YER118C RAD54P32863 898 aa8.52□□□□□ -1.05
SHO1YER118C ORC6P38826 435 aa8.52□□□□□ -1.05
SHO1YER118C JSN1P47135 1091 aaKnown RBP RIP-Chip data8.52□□□□□ -1.05not detected
SHO1YER118C TRL1P09880 827 aaKnown RBP8.51□□□□□ -1.05
SHO1YER118C WHI5Q12416 295 aa8.51□□□□□ -1.05
SHO1YER118C STB3Q12427 513 aa8.51□□□□□ -1.05
SHO1YER118C PDR1P12383 1068 aa8.5□□□□□ -1.05
SHO1YER118C TSR4P25040 408 aa8.5□□□□□ -1.05
SHO1YER118C NAB3P38996 802 aaKnown RBP RIP-Chip data8.5□□□□□ -1.05not detected
SHO1YER118C KAR5Q04746 504 aa8.5□□□□□ -1.05
SHO1YER118C ESS1P22696 170 aa8.49□□□□□ -1.05
SHO1YER118C CLB5P30283 435 aa8.49□□□□□ -1.05
SHO1YER118C PEP12P32854 288 aa8.49□□□□□ -1.05
SHO1YER118C PCS60P38137 543 aaKnown RBP RIP-Chip data8.49□□□□□ -1.05not detected
SHO1YER118C MDJ2P42834 146 aa8.49□□□□□ -1.05
SHO1YER118C FPK1P53739 893 aa8.49□□□□□ -1.05
SHO1YER118C ECM23Q02710 187 aa8.49□□□□□ -1.05
SHO1YER118C MMP1Q12372 583 aa8.49□□□□□ -1.05
SHO1YER118C GRS1P38088 690 aaKnown RBP8.48□□□□□ -1.05
SHO1YER118C NIS1P53939 407 aa8.48□□□□□ -1.05
SHO1YER118C SRP40P32583 406 aaPredicted RBP8.47□□□□□ -1.05
SHO1YER118C TFG1P41895 735 aaPredicted RBP8.47□□□□□ -1.05
SHO1YER118C ALG12P53730 551 aa8.47□□□□□ -1.05
SHO1YER118C YMR196WQ04336 1088 aa8.47□□□□□ -1.05
SHO1YER118C CIT2P08679 460 aa8.46□□□□□ -1.06
SHO1YER118C RGR1P19263 1082 aa8.46□□□□□ -1.06
SHO1YER118C TIF4632P39936 914 aaKnown RBP8.46□□□□□ -1.06
SHO1YER118C THI12P42883 340 aa8.46□□□□□ -1.06
SHO1YER118C THI5P43534 340 aa8.46□□□□□ -1.06
SHO1YER118C YJR107WP47145 328 aa8.46□□□□□ -1.06
SHO1YER118C THI11P47183 340 aa8.46□□□□□ -1.06
SHO1YER118C MDG1P53885 366 aa8.46□□□□□ -1.06
SHO1YER118C THI13Q07748 340 aa8.46□□□□□ -1.06
SHO1YER118C TPS3P38426 1054 aaKnown RBP8.45□□□□□ -1.06
SHO1YER118C ARG8P18544 423 aa8.44□□□□□ -1.06
SHO1YER118C SCJ1P25303 377 aa8.44□□□□□ -1.06
SHO1YER118C YJU3P28321 313 aa8.44□□□□□ -1.06
SHO1YER118C MGE1P38523 228 aa8.44□□□□□ -1.06
SHO1YER118C VAC8P39968 578 aa8.44□□□□□ -1.06
SHO1YER118C TGL3P40308 642 aa8.44□□□□□ -1.06
SHO1YER118C IOC3P43596 787 aa8.44□□□□□ -1.06
SHO1YER118C SSB1P11484 613 aaKnown RBP8.43□□□□□ -1.06
SHO1YER118C YKL091CP33324 310 aaKnown RBP8.43□□□□□ -1.06
SHO1YER118C SSB2P40150 613 aaKnown RBP8.43□□□□□ -1.06
SHO1YER118C YGR273CP53329 174 aa8.43□□□□□ -1.06
SHO1YER118C CWC15Q03772 175 aaKnown RBP8.43□□□□□ -1.06
SHO1YER118C UBX7P38349 436 aa8.42□□□□□ -1.06
SHO1YER118C KTR7P40504 517 aa8.42□□□□□ -1.06
SHO1YER118C YPP1P46951 817 aa8.42□□□□□ -1.06
SHO1YER118C MET1P36150 593 aa8.41□□□□□ -1.06
SHO1YER118C TPM2P40414 161 aa8.41□□□□□ -1.06
SHO1YER118C ATH1P48016 1211 aa8.41□□□□□ -1.06
SHO1YER118C ALD3P54114 506 aa8.41□□□□□ -1.06
SHO1YER118C GAL2P13181 574 aa8.4□□□□□ -1.06
SHO1YER118C RDS2P19541 446 aaKnown RBP8.4□□□□□ -1.06
SHO1YER118C ATG1P53104 897 aa8.4□□□□□ -1.06
SHO1YER118C GUT1P32190 709 aa8.39□□□□□ -1.07
SHO1YER118C POB3Q04636 552 aaKnown RBP8.39□□□□□ -1.07
SHO1YER118C PMC1P38929 1173 aaPredicted RBP8.38□□□□□ -1.07
SHO1YER118C MVP1P40959 511 aaKnown RBP8.38□□□□□ -1.07
SHO1YER118C ZDS1P50111 915 aaKnown RBP8.38□□□□□ -1.07
SHO1YER118C ALD6P54115 500 aaKnown RBP8.38□□□□□ -1.07
SHO1YER118C UBP3Q01477 912 aaKnown RBP RIP-Chip data8.38□□□□□ -1.07not detected
SHO1YER118C MNL2Q12205 849 aa8.38□□□□□ -1.07
SHO1YER118C YOR238WQ08634 303 aa8.37□□□□□ -1.07
SHO1YER118C RSC30P38781 883 aa8.36□□□□□ -1.07
SHO1YER118C NOP2P40991 618 aaKnown RBP8.36□□□□□ -1.07
SHO1YER118C RPN4Q03465 531 aa8.36□□□□□ -1.07
SHO1YER118C NSE3Q05541 303 aa8.36□□□□□ -1.07
SHO1YER118C NUT2Q06213 157 aa8.36□□□□□ -1.07
SHO1YER118C GRE2Q12068 342 aaKnown RBP8.36□□□□□ -1.07
SHO1YER118C GRX4P32642 244 aa8.35□□□□□ -1.07
SHO1YER118C YJL049WP47048 450 aa8.35□□□□□ -1.07
SHO1YER118C YOL057WQ08225 711 aa8.35□□□□□ -1.07
SHO1YER118C MET4P32389 672 aa8.34□□□□□ -1.07
SHO1YER118C BOL3P39724 118 aa8.34□□□□□ -1.07
SHO1YER118C FYV10P40492 516 aa8.34□□□□□ -1.07
SHO1YER118C PUF6Q04373 656 aaKnown RBP8.34□□□□□ -1.07
SHO1YER118C SIT4P20604 311 aa8.33□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 9.1 ms