RNA–Protein interactions for RNA: YDR498C

SEC20, Transcript of Membrane glycoprotein v-SNARE, yeastyeast

Gene SEC20, Length 1,152 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC20YDR498C PAF1P38351 445 aa7.88□□□□□ -1.15
SEC20YDR498C IPL1P38991 367 aa7.88□□□□□ -1.15
SEC20YDR498C BCK1Q01389 1478 aa7.87□□□□□ -1.15
SEC20YDR498C YLR271WQ06152 274 aa7.87□□□□□ -1.15
SEC20YDR498C NSR1P27476 414 aaKnown RBP RIP-Chip data7.86□□□□□ -1.15not detected
SEC20YDR498C SLX5P32828 619 aaKnown RBP7.86□□□□□ -1.15
SEC20YDR498C EPS1P40557 701 aa7.86□□□□□ -1.15
SEC20YDR498C TY1B-NL2Q99337 1749 aaKnown RBP7.86□□□□□ -1.15
SEC20YDR498C ORC1P54784 914 aaPredicted RBP7.85□□□□□ -1.15
SEC20YDR498C TAF5P38129 798 aa7.84□□□□□ -1.15
SEC20YDR498C RAD9P14737 1309 aa7.83□□□□□ -1.16
SEC20YDR498C SPT7P35177 1332 aa7.83□□□□□ -1.16
SEC20YDR498C AI2P03876 854 aa7.83□□□□□ -1.16
SEC20YDR498C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.83□□□□□ -1.16not detected
SEC20YDR498C MHP1P43638 1398 aa7.83□□□□□ -1.16
SEC20YDR498C YAP3P38749 330 aa7.82□□□□□ -1.16
SEC20YDR498C BBC1P47068 1157 aa7.82□□□□□ -1.16
SEC20YDR498C BDF1P35817 686 aa7.81□□□□□ -1.16
SEC20YDR498C TY4B-HP0C2J7 1802 aa7.8□□□□□ -1.16
SEC20YDR498C TY4B-JP47024 1803 aa7.8□□□□□ -1.16
SEC20YDR498C YIL177CP40434 1758 aa7.79□□□□□ -1.16
SEC20YDR498C YJL225CP40889 1758 aa7.79□□□□□ -1.16
SEC20YDR498C NST1P53935 1240 aa7.78□□□□□ -1.16
SEC20YDR498C ESL2P36168 1195 aa7.76□□□□□ -1.17
SEC20YDR498C TIF4632P39936 914 aaKnown RBP7.76□□□□□ -1.17
SEC20YDR498C KIP3P53086 805 aaKnown RBP7.76□□□□□ -1.17
SEC20YDR498C ALD4P46367 519 aaKnown RBP7.75□□□□□ -1.17
SEC20YDR498C PSD2P53037 1138 aaKnown RBP7.75□□□□□ -1.17
SEC20YDR498C URN1Q06525 465 aaKnown RBP7.75□□□□□ -1.17
SEC20YDR498C KRE5P22023 1365 aa7.74□□□□□ -1.17
SEC20YDR498C YML133CQ03099 1374 aa7.74□□□□□ -1.17
SEC20YDR498C YLL067CQ07888 1374 aa7.74□□□□□ -1.17
SEC20YDR498C YLL066CQ99208 1374 aa7.74□□□□□ -1.17
SEC20YDR498C CFT1Q06632 1357 aaKnown RBP7.73□□□□□ -1.17
SEC20YDR498C CAB1Q04430 367 aa7.73□□□□□ -1.17
SEC20YDR498C SEC3P33332 1336 aaKnown RBP7.73□□□□□ -1.17
SEC20YDR498C SPE2P21182 396 aa7.72□□□□□ -1.17
SEC20YDR498C TAF8Q03750 510 aa7.71□□□□□ -1.18
SEC20YDR498C SNF2P22082 1703 aa7.69□□□□□ -1.18
SEC20YDR498C ENP1P38333 483 aaKnown RBP7.69□□□□□ -1.18
SEC20YDR498C PDS5Q04264 1277 aa7.69□□□□□ -1.18
SEC20YDR498C RRP5Q05022 1729 aaKnown RBP7.67□□□□□ -1.18
SEC20YDR498C LEU3P08638 886 aa7.67□□□□□ -1.18
SEC20YDR498C TGL3P40308 642 aa7.67□□□□□ -1.18
SEC20YDR498C MAK10Q02197 733 aa7.67□□□□□ -1.18
SEC20YDR498C ABP1P15891 592 aaKnown RBP7.65□□□□□ -1.18
SEC20YDR498C MGA2P40578 1113 aa7.65□□□□□ -1.18
SEC20YDR498C PPH3P32345 308 aa7.64□□□□□ -1.19
SEC20YDR498C RTG3P38165 486 aa7.64□□□□□ -1.19
SEC20YDR498C URB1P34241 1764 aaKnown RBP7.64□□□□□ -1.19
SEC20YDR498C FKH1P40466 484 aa7.63□□□□□ -1.19
SEC20YDR498C RIA1P53893 1110 aa7.63□□□□□ -1.19
SEC20YDR498C CST9Q06032 482 aa7.63□□□□□ -1.19
SEC20YDR498C YEF3P16521 1044 aaKnown RBP7.62□□□□□ -1.19
SEC20YDR498C PRS1P32895 427 aaKnown RBP7.62□□□□□ -1.19
SEC20YDR498C PSK1P31374 1356 aa7.61□□□□□ -1.19
SEC20YDR498C CHZ1P40019 153 aaPredicted RBP7.6□□□□□ -1.19
SEC20YDR498C RCM1P53972 490 aa7.6□□□□□ -1.19
SEC20YDR498C FKS3Q04952 1785 aa7.6□□□□□ -1.19
SEC20YDR498C MRM1P25270 412 aa7.59□□□□□ -1.19
SEC20YDR498C YNR029CP53729 429 aaKnown RBP7.59□□□□□ -1.19
SEC20YDR498C YRF1-2P40105 1681 aa7.59□□□□□ -1.19
SEC20YDR498C TRK1P12685 1235 aa7.58□□□□□ -1.2
SEC20YDR498C MRX12P47084 519 aa7.58□□□□□ -1.2
SEC20YDR498C APC1P53886 1748 aa7.58□□□□□ -1.2
SEC20YDR498C AUS1Q08409 1394 aa7.57□□□□□ -1.2
SEC20YDR498C CPS1P27614 576 aa7.54□□□□□ -1.2
SEC20YDR498C YRF1-3P0CX14 1859 aa7.53□□□□□ -1.2
SEC20YDR498C YRF1-7P0CX15 1859 aa7.53□□□□□ -1.2
SEC20YDR498C YRF1-6P53819 1859 aa7.53□□□□□ -1.2
SEC20YDR498C ADE6P38972 1358 aaKnown RBP7.53□□□□□ -1.2
SEC20YDR498C RRP46P53256 223 aaPredicted RBP7.52□□□□□ -1.21
SEC20YDR498C NAP1P25293 417 aaKnown RBP7.49□□□□□ -1.21
SEC20YDR498C HIM1Q06674 414 aa7.48□□□□□ -1.21
SEC20YDR498C THI12P42883 340 aa7.47□□□□□ -1.21
SEC20YDR498C THI5P43534 340 aa7.47□□□□□ -1.21
SEC20YDR498C THI11P47183 340 aa7.47□□□□□ -1.21
SEC20YDR498C THI13Q07748 340 aa7.47□□□□□ -1.21
SEC20YDR498C PRP43P53131 767 aaKnown RBP7.46□□□□□ -1.22
SEC20YDR498C IOC4Q04213 475 aa7.45□□□□□ -1.22
SEC20YDR498C LEU2P04173 364 aaPredicted RBP7.44□□□□□ -1.22
SEC20YDR498C YAP5P40574 245 aa7.44□□□□□ -1.22
SEC20YDR498C NOP2P40991 618 aaKnown RBP7.44□□□□□ -1.22
SEC20YDR498C TAP42Q04372 366 aa7.44□□□□□ -1.22
SEC20YDR498C YOR238WQ08634 303 aa7.44□□□□□ -1.22
SEC20YDR498C RPS24AP0CX31 135 aaKnown RBP7.43□□□□□ -1.22
SEC20YDR498C RPS24BP0CX32 135 aaKnown RBP7.43□□□□□ -1.22
SEC20YDR498C MPP10P47083 593 aaKnown RBP7.43□□□□□ -1.22
SEC20YDR498C SUI2P20459 304 aaKnown RBP7.42□□□□□ -1.22
SEC20YDR498C SCT1P32784 759 aa7.42□□□□□ -1.22
SEC20YDR498C FUN12P39730 1002 aaKnown RBP7.42□□□□□ -1.22
SEC20YDR498C MTR4P47047 1073 aaKnown RBP7.42□□□□□ -1.22
SEC20YDR498C YMR196WQ04336 1088 aa7.42□□□□□ -1.22
SEC20YDR498C YRF1-4O13559 1382 aa7.42□□□□□ -1.22
SEC20YDR498C YDL144CQ07589 356 aa7.41□□□□□ -1.22
SEC20YDR498C PDI1P17967 522 aaKnown RBP7.4□□□□□ -1.22
SEC20YDR498C RCR1P38212 213 aa7.4□□□□□ -1.22
SEC20YDR498C RVB2Q12464 471 aaKnown RBP7.4□□□□□ -1.22
SEC20YDR498C RIM15P43565 1770 aa7.4□□□□□ -1.23
SEC20YDR498C CSE4P36012 229 aa7.39□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms