RNA–Protein interactions for RNA: YDR301W

CFT1, Transcript of RNA-binding subunit of the mRNA cleavage and polyadenylation factor, yeastyeast

Gene CFT1, Length 4,074 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CFT1YDR301W SNF2P22082 1703 aa2.39□□□□□ -2.03
CFT1YDR301W ADE6P38972 1358 aaKnown RBP2.39□□□□□ -2.03
CFT1YDR301W MHP1P43638 1398 aa2.38□□□□□ -2.03
CFT1YDR301W YCK3P39962 524 aa2.38□□□□□ -2.03
CFT1YDR301W RAD9P14737 1309 aa2.38□□□□□ -2.03
CFT1YDR301W YRF1-3P0CX14 1859 aa2.38□□□□□ -2.03
CFT1YDR301W YRF1-7P0CX15 1859 aa2.38□□□□□ -2.03
CFT1YDR301W YRF1-6P53819 1859 aa2.38□□□□□ -2.03
CFT1YDR301W PRP43P53131 767 aaKnown RBP2.37□□□□□ -2.03
CFT1YDR301W EDE1P34216 1381 aa2.36□□□□□ -2.03
CFT1YDR301W YML133CQ03099 1374 aa2.36□□□□□ -2.03
CFT1YDR301W YLL067CQ07888 1374 aa2.36□□□□□ -2.03
CFT1YDR301W YLL066CQ99208 1374 aa2.36□□□□□ -2.03
CFT1YDR301W LEO1P38439 464 aa2.36□□□□□ -2.03
CFT1YDR301W YNR029CP53729 429 aaKnown RBP2.36□□□□□ -2.03
CFT1YDR301W NAP1P25293 417 aaKnown RBP2.36□□□□□ -2.03
CFT1YDR301W KRE5P22023 1365 aa2.35□□□□□ -2.03
CFT1YDR301W RIM15P43565 1770 aa2.35□□□□□ -2.03
CFT1YDR301W SEC3P33332 1336 aaKnown RBP2.35□□□□□ -2.03
CFT1YDR301W CPS1P27614 576 aa2.34□□□□□ -2.03
CFT1YDR301W MRX12P47084 519 aa2.33□□□□□ -2.04
CFT1YDR301W UTP10P42945 1769 aaKnown RBP2.33□□□□□ -2.04
CFT1YDR301W FKH1P40466 484 aa2.33□□□□□ -2.04
CFT1YDR301W POL5P39985 1022 aaKnown RBP2.33□□□□□ -2.04
CFT1YDR301W YFR006WP43590 535 aa2.33□□□□□ -2.04
CFT1YDR301W YAH1Q12184 172 aaKnown RBP2.33□□□□□ -2.04
CFT1YDR301W THI12P42883 340 aa2.32□□□□□ -2.04
CFT1YDR301W THI5P43534 340 aa2.32□□□□□ -2.04
CFT1YDR301W THI11P47183 340 aa2.32□□□□□ -2.04
CFT1YDR301W CAB1Q04430 367 aa2.32□□□□□ -2.04
CFT1YDR301W THI13Q07748 340 aa2.32□□□□□ -2.04
CFT1YDR301W RPL17AP05740 184 aaKnown RBP2.32□□□□□ -2.04
CFT1YDR301W SPE2P21182 396 aa2.32□□□□□ -2.04
CFT1YDR301W RPL17BP46990 184 aaKnown RBP2.32□□□□□ -2.04
CFT1YDR301W RIA1P53893 1110 aa2.32□□□□□ -2.04
CFT1YDR301W ISW2Q08773 1120 aa2.32□□□□□ -2.04
CFT1YDR301W TAF5P38129 798 aa2.32□□□□□ -2.04
CFT1YDR301W TAP42Q04372 366 aa2.32□□□□□ -2.04
CFT1YDR301W MTR4P47047 1073 aaKnown RBP2.32□□□□□ -2.04
CFT1YDR301W TAF8Q03750 510 aa2.32□□□□□ -2.04
CFT1YDR301W SIR4P11978 1358 aa2.31□□□□□ -2.04
CFT1YDR301W AUS1Q08409 1394 aa2.31□□□□□ -2.04
CFT1YDR301W KIP3P53086 805 aaKnown RBP2.3□□□□□ -2.04
CFT1YDR301W PPH3P32345 308 aa2.3□□□□□ -2.04
CFT1YDR301W RSF2P46974 1380 aa2.3□□□□□ -2.04
CFT1YDR301W HOP09932 586 aa2.3□□□□□ -2.04
CFT1YDR301W REB1P21538 810 aa2.3□□□□□ -2.04
CFT1YDR301W YRF1-4O13559 1382 aa2.29□□□□□ -2.04
CFT1YDR301W RPO41P13433 1351 aaKnown RBP2.29□□□□□ -2.04
CFT1YDR301W ROM2P51862 1356 aaKnown RBP2.29□□□□□ -2.04
CFT1YDR301W LEU2P04173 364 aaPredicted RBP2.29□□□□□ -2.04
CFT1YDR301W GRX4P32642 244 aa2.29□□□□□ -2.04
CFT1YDR301W LYS2P07702 1392 aa2.29□□□□□ -2.04
CFT1YDR301W RPP0P05317 312 aaKnown RBP2.28□□□□□ -2.04
CFT1YDR301W YFR016CP43597 1233 aaKnown RBP2.28□□□□□ -2.04
CFT1YDR301W RCM1P53972 490 aa2.28□□□□□ -2.04
CFT1YDR301W SPT7P35177 1332 aa2.28□□□□□ -2.05
CFT1YDR301W CHZ1P40019 153 aaPredicted RBP2.27□□□□□ -2.05
CFT1YDR301W PDS5Q04264 1277 aa2.27□□□□□ -2.05
CFT1YDR301W DMA1P38823 416 aa2.27□□□□□ -2.05
CFT1YDR301W CTF4Q01454 927 aa2.27□□□□□ -2.05
CFT1YDR301W PDI1P17967 522 aaKnown RBP2.27□□□□□ -2.05
CFT1YDR301W PRI1P10363 409 aa2.27□□□□□ -2.05
CFT1YDR301W YEF3P16521 1044 aaKnown RBP2.26□□□□□ -2.05
CFT1YDR301W SLM3Q12093 417 aa2.26□□□□□ -2.05
CFT1YDR301W ENP1P38333 483 aaKnown RBP2.26□□□□□ -2.05
CFT1YDR301W RTF1P53064 558 aa2.26□□□□□ -2.05
CFT1YDR301W LEU3P08638 886 aa2.25□□□□□ -2.05
CFT1YDR301W RTG3P38165 486 aa2.25□□□□□ -2.05
CFT1YDR301W PRP5P21372 849 aaPredicted RBP2.25□□□□□ -2.05
CFT1YDR301W MRPL32P25348 183 aa2.25□□□□□ -2.05
CFT1YDR301W YRB30P53107 440 aaPredicted RBP2.24□□□□□ -2.05
CFT1YDR301W TCB1Q12466 1186 aa2.24□□□□□ -2.05
CFT1YDR301W FIG2P25653 1609 aa2.23□□□□□ -2.05
CFT1YDR301W ENV9Q08651 330 aa2.23□□□□□ -2.05
CFT1YDR301W IMH1Q06704 911 aaKnown RBP2.23□□□□□ -2.05
CFT1YDR301W HAA1Q12753 694 aaKnown RBP2.23□□□□□ -2.05
CFT1YDR301W RPS24AP0CX31 135 aaKnown RBP2.23□□□□□ -2.05
CFT1YDR301W RPS24BP0CX32 135 aaKnown RBP2.23□□□□□ -2.05
CFT1YDR301W CSE4P36012 229 aa2.23□□□□□ -2.05
CFT1YDR301W YIL055CP40523 627 aaKnown RBP2.23□□□□□ -2.05
CFT1YDR301W YMR074CQ04773 145 aa2.23□□□□□ -2.05
CFT1YDR301W ARP8Q12386 881 aaKnown RBP RIP-Chip data2.23□□□□□ -2.05not detected
CFT1YDR301W ENT1Q12518 454 aa2.23□□□□□ -2.05
CFT1YDR301W GTT3P39996 337 aa2.22□□□□□ -2.05
CFT1YDR301W RRP46P53256 223 aaPredicted RBP2.22□□□□□ -2.05
CFT1YDR301W MSB3P48566 633 aaPredicted RBP2.22□□□□□ -2.05
CFT1YDR301W HKR1P41809 1802 aa2.22□□□□□ -2.05
CFT1YDR301W DUR1,2P32528 1835 aaKnown RBP2.22□□□□□ -2.05
CFT1YDR301W TRK1P12685 1235 aa2.22□□□□□ -2.05
CFT1YDR301W IES2P40154 320 aa2.22□□□□□ -2.05
CFT1YDR301W YNL050CP53952 270 aa2.22□□□□□ -2.05
CFT1YDR301W MEC3Q02574 474 aa2.22□□□□□ -2.05
CFT1YDR301W NUP145P49687 1317 aa2.22□□□□□ -2.05
CFT1YDR301W PRP45P28004 379 aaPredicted RBP2.22□□□□□ -2.05
CFT1YDR301W PSD2P53037 1138 aaKnown RBP2.22□□□□□ -2.05
CFT1YDR301W DSD1P53095 428 aa2.22□□□□□ -2.05
CFT1YDR301W HIM1Q06674 414 aa2.22□□□□□ -2.05
CFT1YDR301W KAR2P16474 682 aaKnown RBP2.21□□□□□ -2.06
CFT1YDR301W MAM1P40065 302 aa2.21□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms