RNA–Protein interactions for RNA: YDL078C

MDH3, Transcript of Peroxisomal malate dehydrogenase, yeastyeast

Gene MDH3, Length 1,032 nt, Biotype protein coding, Subcellular localisation Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MDH3YDL078C BCK1Q01389 1478 aa8.11□□□□□ -1.11
MDH3YDL078C RTC1Q08281 1341 aa8.09□□□□□ -1.11
MDH3YDL078C NOP7P53261 605 aaKnown RBP8.09□□□□□ -1.11
MDH3YDL078C HOP09932 586 aa8.08□□□□□ -1.12
MDH3YDL078C YNR029CP53729 429 aaKnown RBP8.08□□□□□ -1.12
MDH3YDL078C ALD4P46367 519 aaKnown RBP8.07□□□□□ -1.12
MDH3YDL078C NUP192P47054 1683 aa8.06□□□□□ -1.12
MDH3YDL078C DCD1P06773 312 aa8.05□□□□□ -1.12
MDH3YDL078C CAB1Q04430 367 aa8.05□□□□□ -1.12
MDH3YDL078C TFC8Q12308 588 aa8.05□□□□□ -1.12
MDH3YDL078C RAD9P14737 1309 aa8.03□□□□□ -1.12
MDH3YDL078C YAH1Q12184 172 aaKnown RBP8.03□□□□□ -1.12
MDH3YDL078C PTP3P40048 928 aa8.02□□□□□ -1.13
MDH3YDL078C NAP1P25293 417 aaKnown RBP8□□□□□ -1.13
MDH3YDL078C ESL2P36168 1195 aa7.99□□□□□ -1.13
MDH3YDL078C RIM101P33400 625 aa7.97□□□□□ -1.13
MDH3YDL078C TAF5P38129 798 aa7.95□□□□□ -1.14
MDH3YDL078C APP1P53933 587 aa7.95□□□□□ -1.14
MDH3YDL078C TY3B-IQ7LHG5 1498 aaKnown RBP7.94□□□□□ -1.14
MDH3YDL078C TAF8Q03750 510 aa7.94□□□□□ -1.14
MDH3YDL078C SCY1P53009 804 aa7.93□□□□□ -1.14
MDH3YDL078C YIL055CP40523 627 aaKnown RBP7.91□□□□□ -1.14
MDH3YDL078C CPS1P27614 576 aa7.9□□□□□ -1.14
MDH3YDL078C TIF4632P39936 914 aaKnown RBP7.9□□□□□ -1.14
MDH3YDL078C ENT1Q12518 454 aa7.9□□□□□ -1.14
MDH3YDL078C GLN1P32288 370 aaKnown RBP7.89□□□□□ -1.15
MDH3YDL078C RCM1P53972 490 aa7.88□□□□□ -1.15
MDH3YDL078C RRP5Q05022 1729 aaKnown RBP7.87□□□□□ -1.15
MDH3YDL078C SLX5P32828 619 aaKnown RBP7.86□□□□□ -1.15
MDH3YDL078C ENV9Q08651 330 aa7.86□□□□□ -1.15
MDH3YDL078C SPE2P21182 396 aa7.85□□□□□ -1.15
MDH3YDL078C PRP45P28004 379 aaPredicted RBP7.84□□□□□ -1.15
MDH3YDL078C PPH3P32345 308 aa7.84□□□□□ -1.15
MDH3YDL078C TGL3P40308 642 aa7.84□□□□□ -1.15
MDH3YDL078C KIP3P53086 805 aaKnown RBP7.84□□□□□ -1.15
MDH3YDL078C YRF1-2P40105 1681 aa7.83□□□□□ -1.16
MDH3YDL078C IMH1Q06704 911 aaKnown RBP7.83□□□□□ -1.16
MDH3YDL078C TY4B-HP0C2J7 1802 aa7.82□□□□□ -1.16
MDH3YDL078C TY4B-JP47024 1803 aa7.82□□□□□ -1.16
MDH3YDL078C SCT1P32784 759 aa7.82□□□□□ -1.16
MDH3YDL078C PSK1P31374 1356 aa7.82□□□□□ -1.16
MDH3YDL078C YMR074CQ04773 145 aa7.81□□□□□ -1.16
MDH3YDL078C PRP5P21372 849 aaPredicted RBP7.8□□□□□ -1.16
MDH3YDL078C UBP9P39967 754 aa7.79□□□□□ -1.16
MDH3YDL078C ADE6P38972 1358 aaKnown RBP7.79□□□□□ -1.16
MDH3YDL078C CHZ1P40019 153 aaPredicted RBP7.78□□□□□ -1.16
MDH3YDL078C NOP2P40991 618 aaKnown RBP7.78□□□□□ -1.16
MDH3YDL078C BCH2P36122 765 aa7.77□□□□□ -1.17
MDH3YDL078C DMA1P38823 416 aa7.77□□□□□ -1.17
MDH3YDL078C LEU2P04173 364 aaPredicted RBP7.76□□□□□ -1.17
MDH3YDL078C SIS1P25294 352 aaKnown RBP7.76□□□□□ -1.17
MDH3YDL078C ORC1P54784 914 aaPredicted RBP7.76□□□□□ -1.17
MDH3YDL078C YLR419WQ06698 1435 aaKnown RBP7.76□□□□□ -1.17
MDH3YDL078C SSP1P38871 571 aa7.75□□□□□ -1.17
MDH3YDL078C MTR4P47047 1073 aaKnown RBP7.75□□□□□ -1.17
MDH3YDL078C OXP1P28273 1286 aa7.74□□□□□ -1.17
MDH3YDL078C MSB3P48566 633 aaPredicted RBP7.74□□□□□ -1.17
MDH3YDL078C PRP43P53131 767 aaKnown RBP7.74□□□□□ -1.17
MDH3YDL078C LEU3P08638 886 aa7.73□□□□□ -1.17
MDH3YDL078C CSE4P36012 229 aa7.73□□□□□ -1.17
MDH3YDL078C TCB1Q12466 1186 aa7.72□□□□□ -1.17
MDH3YDL078C URB1P34241 1764 aaKnown RBP7.71□□□□□ -1.17
MDH3YDL078C SLM3Q12093 417 aa7.71□□□□□ -1.18
MDH3YDL078C RPS24AP0CX31 135 aaKnown RBP7.7□□□□□ -1.18
MDH3YDL078C RPS24BP0CX32 135 aaKnown RBP7.7□□□□□ -1.18
MDH3YDL078C IES2P40154 320 aa7.7□□□□□ -1.18
MDH3YDL078C RSF2P46974 1380 aa7.7□□□□□ -1.18
MDH3YDL078C MLP1Q02455 1875 aaKnown RBP7.69□□□□□ -1.18
MDH3YDL078C UBP1P25037 809 aa7.68□□□□□ -1.18
MDH3YDL078C ROM2P51862 1356 aaKnown RBP7.67□□□□□ -1.18
MDH3YDL078C FKS3Q04952 1785 aa7.66□□□□□ -1.18
MDH3YDL078C YRF1-3P0CX14 1859 aa7.66□□□□□ -1.18
MDH3YDL078C YRF1-7P0CX15 1859 aa7.66□□□□□ -1.18
MDH3YDL078C YRF1-6P53819 1859 aa7.66□□□□□ -1.18
MDH3YDL078C YEF3P16521 1044 aaKnown RBP7.66□□□□□ -1.18
MDH3YDL078C ENP1P38333 483 aaKnown RBP7.66□□□□□ -1.18
MDH3YDL078C DOT5P40553 215 aa7.66□□□□□ -1.18
MDH3YDL078C YML133CQ03099 1374 aa7.66□□□□□ -1.18
MDH3YDL078C YLL067CQ07888 1374 aa7.66□□□□□ -1.18
MDH3YDL078C YLL066CQ99208 1374 aa7.66□□□□□ -1.18
MDH3YDL078C EDE1P34216 1381 aa7.65□□□□□ -1.18
MDH3YDL078C FKH1P40466 484 aa7.65□□□□□ -1.18
MDH3YDL078C RPN11P43588 306 aaKnown RBP7.65□□□□□ -1.18
MDH3YDL078C CAB3P36076 571 aa7.64□□□□□ -1.19
MDH3YDL078C YIL177CP40434 1758 aa7.64□□□□□ -1.19
MDH3YDL078C YJL225CP40889 1758 aa7.64□□□□□ -1.19
MDH3YDL078C XKS1P42826 600 aa7.63□□□□□ -1.19
MDH3YDL078C RTF1P53064 558 aa7.63□□□□□ -1.19
MDH3YDL078C PDI1P17967 522 aaKnown RBP7.62□□□□□ -1.19
MDH3YDL078C YKL133CP36066 463 aa7.62□□□□□ -1.19
MDH3YDL078C YJL181WP46987 611 aa7.62□□□□□ -1.19
MDH3YDL078C FOX2Q02207 900 aaKnown RBP7.62□□□□□ -1.19
MDH3YDL078C APC1P53886 1748 aa7.61□□□□□ -1.19
MDH3YDL078C EBP2P36049 427 aaKnown RBP7.61□□□□□ -1.19
MDH3YDL078C RTG3P38165 486 aa7.61□□□□□ -1.19
MDH3YDL078C LAM6Q08001 693 aa7.61□□□□□ -1.19
MDH3YDL078C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.61□□□□□ -1.19not detected
MDH3YDL078C DPS1P04802 557 aaKnown RBP7.6□□□□□ -1.19
MDH3YDL078C POL5P39985 1022 aaKnown RBP7.6□□□□□ -1.19
MDH3YDL078C GAS4Q08271 471 aa7.6□□□□□ -1.19
Retrieved 100 of 5,963 RNA–protein pairs in 69.9 ms