RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W SIS1P25294 352 aaKnown RBP8.66□□□□□ -1.02
SHP1YBL058W SSM4P40318 1319 aa8.65□□□□□ -1.02
SHP1YBL058W IKI3Q06706 1349 aaKnown RBP8.65□□□□□ -1.02
SHP1YBL058W MAP2P38174 421 aaKnown RBP8.64□□□□□ -1.03
SHP1YBL058W YMR074CQ04773 145 aa8.63□□□□□ -1.03
SHP1YBL058W NUP192P47054 1683 aa8.62□□□□□ -1.03
SHP1YBL058W TY3B-IQ7LHG5 1498 aaKnown RBP8.58□□□□□ -1.04
SHP1YBL058W CAB1Q04430 367 aa8.58□□□□□ -1.04
SHP1YBL058W ENT1Q12518 454 aa8.58□□□□□ -1.04
SHP1YBL058W RAD9P14737 1309 aa8.56□□□□□ -1.04
SHP1YBL058W YRF1-2P40105 1681 aa8.56□□□□□ -1.04
SHP1YBL058W ENV9Q08651 330 aa8.56□□□□□ -1.04
SHP1YBL058W RAV1P47104 1357 aa8.54□□□□□ -1.04
SHP1YBL058W RRP5Q05022 1729 aaKnown RBP8.53□□□□□ -1.04
SHP1YBL058W ALD4P46367 519 aaKnown RBP8.52□□□□□ -1.05
SHP1YBL058W IMH1Q06704 911 aaKnown RBP8.52□□□□□ -1.05
SHP1YBL058W PAF1P38351 445 aa8.49□□□□□ -1.05
SHP1YBL058W RTC1Q08281 1341 aa8.47□□□□□ -1.05
SHP1YBL058W YKR023WP36119 530 aaKnown RBP8.44□□□□□ -1.06
SHP1YBL058W PRP45P28004 379 aaPredicted RBP8.43□□□□□ -1.06
SHP1YBL058W UBP9P39967 754 aa8.42□□□□□ -1.06
SHP1YBL058W NAP1P25293 417 aaKnown RBP8.41□□□□□ -1.06
SHP1YBL058W TY4B-HP0C2J7 1802 aa8.4□□□□□ -1.06
SHP1YBL058W TY4B-JP47024 1803 aa8.4□□□□□ -1.06
SHP1YBL058W UBP1P25037 809 aa8.4□□□□□ -1.06
SHP1YBL058W TAF5P38129 798 aa8.4□□□□□ -1.06
SHP1YBL058W EDE1P34216 1381 aa8.39□□□□□ -1.07
SHP1YBL058W CPS1P27614 576 aa8.39□□□□□ -1.07
SHP1YBL058W URB1P34241 1764 aaKnown RBP8.38□□□□□ -1.07
SHP1YBL058W GTT3P39996 337 aa8.38□□□□□ -1.07
SHP1YBL058W RCM1P53972 490 aa8.38□□□□□ -1.07
SHP1YBL058W TAF8Q03750 510 aa8.36□□□□□ -1.07
SHP1YBL058W LEU3P08638 886 aa8.35□□□□□ -1.07
SHP1YBL058W PRP5P21372 849 aaPredicted RBP8.35□□□□□ -1.07
SHP1YBL058W PPH3P32345 308 aa8.34□□□□□ -1.07
SHP1YBL058W TGL3P40308 642 aa8.34□□□□□ -1.07
SHP1YBL058W RPN11P43588 306 aaKnown RBP8.34□□□□□ -1.07
SHP1YBL058W NOP7P53261 605 aaKnown RBP8.34□□□□□ -1.07
SHP1YBL058W YBL086CP38177 466 aa8.32□□□□□ -1.08
SHP1YBL058W MSB3P48566 633 aaPredicted RBP8.32□□□□□ -1.08
SHP1YBL058W FKS3Q04952 1785 aa8.31□□□□□ -1.08
SHP1YBL058W ESL2P36168 1195 aa8.31□□□□□ -1.08
SHP1YBL058W UGA2P38067 497 aa8.31□□□□□ -1.08
SHP1YBL058W DOT5P40553 215 aa8.31□□□□□ -1.08
SHP1YBL058W PSK1P31374 1356 aa8.31□□□□□ -1.08
SHP1YBL058W ROM2P51862 1356 aaKnown RBP8.3□□□□□ -1.08
SHP1YBL058W YRF1-3P0CX14 1859 aa8.3□□□□□ -1.08
SHP1YBL058W YRF1-7P0CX15 1859 aa8.3□□□□□ -1.08
SHP1YBL058W YRF1-6P53819 1859 aa8.3□□□□□ -1.08
SHP1YBL058W SSA1P10591 642 aaKnown RBP8.29□□□□□ -1.08
SHP1YBL058W ADE6P38972 1358 aaKnown RBP8.29□□□□□ -1.08
SHP1YBL058W YEF3P16521 1044 aaKnown RBP8.28□□□□□ -1.08
SHP1YBL058W IES2P40154 320 aa8.28□□□□□ -1.08
SHP1YBL058W LYS4P49367 693 aaPredicted RBP8.27□□□□□ -1.09
SHP1YBL058W FOX2Q02207 900 aaKnown RBP8.27□□□□□ -1.09
SHP1YBL058W NPR2P39923 615 aa8.26□□□□□ -1.09
SHP1YBL058W ALD2P47771 506 aa8.26□□□□□ -1.09
SHP1YBL058W RSF2P46974 1380 aa8.25□□□□□ -1.09
SHP1YBL058W TIF4632P39936 914 aaKnown RBP8.25□□□□□ -1.09
SHP1YBL058W TCB1Q12466 1186 aa8.25□□□□□ -1.09
SHP1YBL058W SPT21P35209 758 aa8.24□□□□□ -1.09
SHP1YBL058W YJL181WP46987 611 aa8.24□□□□□ -1.09
SHP1YBL058W TFC8Q12308 588 aa8.23□□□□□ -1.09
SHP1YBL058W SSA2P10592 639 aaKnown RBP8.22□□□□□ -1.09
SHP1YBL058W DCD1P06773 312 aa8.21□□□□□ -1.1
SHP1YBL058W LAM6Q08001 693 aa8.21□□□□□ -1.1
SHP1YBL058W SLM3Q12093 417 aa8.21□□□□□ -1.1
SHP1YBL058W PRP40P33203 583 aaKnown RBP8.2□□□□□ -1.1
SHP1YBL058W CTH1P47976 325 aa8.2□□□□□ -1.1
SHP1YBL058W PRP43P53131 767 aaKnown RBP8.2□□□□□ -1.1
SHP1YBL058W HOP09932 586 aa8.19□□□□□ -1.1
SHP1YBL058W RIM101P33400 625 aa8.19□□□□□ -1.1
SHP1YBL058W SPE2P21182 396 aa8.18□□□□□ -1.1
SHP1YBL058W SCY1P53009 804 aa8.18□□□□□ -1.1
SHP1YBL058W COBP00163 385 aa8.17□□□□□ -1.1
SHP1YBL058W RPS24AP0CX31 135 aaKnown RBP8.17□□□□□ -1.1
SHP1YBL058W RPS24BP0CX32 135 aaKnown RBP8.17□□□□□ -1.1
SHP1YBL058W CSE4P36012 229 aa8.17□□□□□ -1.1
SHP1YBL058W YKL133CP36066 463 aa8.17□□□□□ -1.1
SHP1YBL058W YKR075CP36155 307 aa8.16□□□□□ -1.1
SHP1YBL058W MTR4P47047 1073 aaKnown RBP8.16□□□□□ -1.1
SHP1YBL058W KIP3P53086 805 aaKnown RBP8.16□□□□□ -1.1
SHP1YBL058W YIL177CP40434 1758 aa8.15□□□□□ -1.1
SHP1YBL058W YJL225CP40889 1758 aa8.15□□□□□ -1.1
SHP1YBL058W LEU2P04173 364 aaPredicted RBP8.15□□□□□ -1.1
SHP1YBL058W ENP1P38333 483 aaKnown RBP8.15□□□□□ -1.1
SHP1YBL058W APC1P53886 1748 aa8.15□□□□□ -1.11
SHP1YBL058W YRF1-4O13559 1382 aa8.14□□□□□ -1.11
SHP1YBL058W SLX5P32828 619 aaKnown RBP8.14□□□□□ -1.11
SHP1YBL058W XKS1P42826 600 aa8.14□□□□□ -1.11
SHP1YBL058W SPT7P35177 1332 aa8.12□□□□□ -1.11
SHP1YBL058W SNF2P22082 1703 aa8.12□□□□□ -1.11
SHP1YBL058W CHZ1P40019 153 aaPredicted RBP8.1□□□□□ -1.11
SHP1YBL058W BDF1P35817 686 aa8.09□□□□□ -1.11
SHP1YBL058W YML133CQ03099 1374 aa8.08□□□□□ -1.12
SHP1YBL058W YLL067CQ07888 1374 aa8.08□□□□□ -1.12
SHP1YBL058W YLL066CQ99208 1374 aa8.08□□□□□ -1.12
SHP1YBL058W YLR419WQ06698 1435 aaKnown RBP8.07□□□□□ -1.12
SHP1YBL058W SCT1P32784 759 aa8.07□□□□□ -1.12
SHP1YBL058W FRK1Q03002 865 aaPredicted RBP8.07□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms