RNA–Protein interactions for RNA: ENST00000640001.1

HNRNPU-223, Transcript of heterogeneous nuclear ribonucleoprotein U, human

TSL 5 BASIC

Gene HNRNPU, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPU-223	ENST00000640001	MAPKBP1	O60336	1514 aa		10.62	□□□□□ -0.71
HNRNPU-223	ENST00000640001	CARD11	Q9BXL7	1154 aa		10.62	□□□□□ -0.71
HNRNPU-223	ENST00000640001	SENP3-EIF4A1	A0A087X0R7	540 aa		10.61	□□□□□ -0.71
HNRNPU-223	ENST00000640001	IRX6	P78412	446 aa	Predicted RBP	10.61	□□□□□ -0.71
HNRNPU-223	ENST00000640001	CCER2	I3L3R5	266 aa		10.61	□□□□□ -0.71
HNRNPU-223	ENST00000640001	ABCA5	Q8WWZ7	1642 aa		10.61	□□□□□ -0.71
HNRNPU-223	ENST00000640001	CFAP43	Q8NDM7	1665 aa		10.61	□□□□□ -0.71
HNRNPU-223	ENST00000640001	GRIN2A	Q12879	1464 aa		10.61	□□□□□ -0.71
HNRNPU-223	ENST00000640001	DCAF11	Q8TEB1	546 aa		10.6	□□□□□ -0.71
HNRNPU-223	ENST00000640001	MIA2	Q96PC5	1412 aa		10.6	□□□□□ -0.71
HNRNPU-223	ENST00000640001	PTPN23	Q9H3S7	1636 aa		10.59	□□□□□ -0.71
HNRNPU-223	ENST00000640001	NPM1	P06748	294 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
HNRNPU-223	ENST00000640001	PLB1	Q6P1J6	1458 aa		10.58	□□□□□ -0.72
HNRNPU-223	ENST00000640001	TRO	Q12816	1431 aa	Predicted RBP	10.57	□□□□□ -0.72
HNRNPU-223	ENST00000640001	ERICH6	Q7L0X2	663 aa		10.57	□□□□□ -0.72
HNRNPU-223	ENST00000640001	TMC1	Q8TDI8	760 aa		10.57	□□□□□ -0.72
HNRNPU-223	ENST00000640001	ADAMTS12	P58397	1594 aa		10.57	□□□□□ -0.72
HNRNPU-223	ENST00000640001	THOC2	Q8NI27	1593 aa	Known RBP	10.56	□□□□□ -0.72
HNRNPU-223	ENST00000640001	CHGA	P10645	457 aa	Known RBP	10.56	□□□□□ -0.72
HNRNPU-223	ENST00000640001	SYNJ2	O15056	1496 aa		10.56	□□□□□ -0.72
HNRNPU-223	ENST00000640001	SALL2	Q9Y467	1007 aa	Predicted RBP	10.56	□□□□□ -0.72
HNRNPU-223	ENST00000640001	DAPK1	P53355	1430 aa		10.56	□□□□□ -0.72
HNRNPU-223	ENST00000640001	UGGT2	Q9NYU1	1516 aa		10.54	□□□□□ -0.72
HNRNPU-223	ENST00000640001	TARBP1	Q13395	1621 aa	Known RBP	10.54	□□□□□ -0.72
HNRNPU-223	ENST00000640001	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.54	□□□□□ -0.72
HNRNPU-223	ENST00000640001	SAMD9	Q5K651	1589 aa		10.53	□□□□□ -0.72
HNRNPU-223	ENST00000640001	ABCC5	O15440	1437 aa		10.53	□□□□□ -0.72
HNRNPU-223	ENST00000640001	EFCAB2	Q5VUJ9	269 aa		10.52	□□□□□ -0.73
HNRNPU-223	ENST00000640001	ANKRD50	Q9ULJ7	1429 aa		10.52	□□□□□ -0.73
HNRNPU-223	ENST00000640001	WASHC2A	Q641Q2	1341 aa		10.52	□□□□□ -0.73
HNRNPU-223	ENST00000640001	NBPF8	Q3BBV2	869 aa		10.51	□□□□□ -0.73
HNRNPU-223	ENST00000640001	NUP153	P49790	1475 aa	Known RBP	10.51	□□□□□ -0.73
HNRNPU-223	ENST00000640001	PBRM1	Q86U86	1689 aa		10.51	□□□□□ -0.73
HNRNPU-223	ENST00000640001	KIF15	Q9NS87	1388 aa		10.51	□□□□□ -0.73
HNRNPU-223	ENST00000640001	WDR62	O43379	1518 aa		10.5	□□□□□ -0.73
HNRNPU-223	ENST00000640001	MAGI3	Q5TCQ9	1506 aa		10.5	□□□□□ -0.73
HNRNPU-223	ENST00000640001	RSPH4A	Q5TD94	716 aa		10.49	□□□□□ -0.73
HNRNPU-223	ENST00000640001	EIF4G3	O43432	1585 aa	Known RBP	10.49	□□□□□ -0.73
HNRNPU-223	ENST00000640001	ROCK1	Q13464	1354 aa		10.48	□□□□□ -0.73
HNRNPU-223	ENST00000640001	CAMSAP2	Q08AD1	1489 aa		10.48	□□□□□ -0.73
HNRNPU-223	ENST00000640001	DISP1	Q96F81	1524 aa		10.48	□□□□□ -0.73
HNRNPU-223	ENST00000640001	KIAA0556	O60303	1618 aa		10.48	□□□□□ -0.73
HNRNPU-223	ENST00000640001	SENP3	Q9H4L4	574 aa	Predicted RBP	10.47	□□□□□ -0.73
HNRNPU-223	ENST00000640001	ROCK2	O75116	1388 aa	Known RBP	10.47	□□□□□ -0.73
HNRNPU-223	ENST00000640001	ARHGEF11	O15085	1522 aa		10.47	□□□□□ -0.73
HNRNPU-223	ENST00000640001	USP47	Q96K76	1375 aa		10.47	□□□□□ -0.73
HNRNPU-223	ENST00000640001	C9orf84	Q5VXU9	1444 aa		10.47	□□□□□ -0.73
HNRNPU-223	ENST00000640001	CCDC7	Q96M83	1385 aa		10.47	□□□□□ -0.73
HNRNPU-223	ENST00000640001	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.47	□□□□□ -0.73
HNRNPU-223	ENST00000640001	ST20-MTHFS	A0A0A6YYL1	179 aa		10.46	□□□□□ -0.73
HNRNPU-223	ENST00000640001	RAPGEF6	Q8TEU7	1601 aa		10.46	□□□□□ -0.73
HNRNPU-223	ENST00000640001	KIF7	Q2M1P5	1343 aa		10.46	□□□□□ -0.73
HNRNPU-223	ENST00000640001	MYT1	Q01538	1121 aa		10.46	□□□□□ -0.74
HNRNPU-223	ENST00000640001	ANKRD30B	Q9BXX2	1392 aa		10.45	□□□□□ -0.74
HNRNPU-223	ENST00000640001	AKNA	Q7Z591	1439 aa		10.45	□□□□□ -0.74
HNRNPU-223	ENST00000640001	TCOF1	Q13428	1488 aa	Known RBP	10.45	□□□□□ -0.74
HNRNPU-223	ENST00000640001	SPAG9	O60271	1321 aa	Known RBP	10.45	□□□□□ -0.74
HNRNPU-223	ENST00000640001	GPATCH8	Q9UKJ3	1502 aa	Known RBP	10.44	□□□□□ -0.74
HNRNPU-223	ENST00000640001	NCOA1	Q15788	1441 aa		10.44	□□□□□ -0.74
HNRNPU-223	ENST00000640001	KIAA1107	Q9UPP5	1409 aa		10.44	□□□□□ -0.74
HNRNPU-223	ENST00000640001	CC2D1B	Q5T0F9	858 aa	Known RBP	10.44	□□□□□ -0.74
HNRNPU-223	ENST00000640001	CCDC144A	A2RUR9	1427 aa		10.44	□□□□□ -0.74
HNRNPU-223	ENST00000640001	C11orf95	C9JLR9	678 aa	Predicted RBP	10.43	□□□□□ -0.74
HNRNPU-223	ENST00000640001	ARHGAP5	Q13017	1502 aa		10.42	□□□□□ -0.74
HNRNPU-223	ENST00000640001	KIF3B	O15066	747 aa		10.42	□□□□□ -0.74
HNRNPU-223	ENST00000640001	CNTLN	Q9NXG0	1405 aa		10.42	□□□□□ -0.74
HNRNPU-223	ENST00000640001	ATP10B	O94823	1461 aa		10.41	□□□□□ -0.74
HNRNPU-223	ENST00000640001	CCDC184	Q52MB2	194 aa		10.4	□□□□□ -0.74
HNRNPU-223	ENST00000640001	AFAP1	Q8N556	730 aa		10.4	□□□□□ -0.74
HNRNPU-223	ENST00000640001	TMF1	P82094	1093 aa		10.4	□□□□□ -0.75
HNRNPU-223	ENST00000640001	KANK1	Q14678	1352 aa		10.39	□□□□□ -0.75
HNRNPU-223	ENST00000640001	GGT6	Q6P531	493 aa		10.39	□□□□□ -0.75
HNRNPU-223	ENST00000640001	KIF14	Q15058	1648 aa		10.39	□□□□□ -0.75
HNRNPU-223	ENST00000640001	CEP170	Q5SW79	1584 aa		10.38	□□□□□ -0.75
HNRNPU-223	ENST00000640001	NUP160	Q12769	1436 aa		10.38	□□□□□ -0.75
HNRNPU-223	ENST00000640001	CCDC136	Q96JN2	1154 aa		10.38	□□□□□ -0.75
HNRNPU-223	ENST00000640001	KNSTRN	Q9Y448	316 aa		10.38	□□□□□ -0.75
HNRNPU-223	ENST00000640001	RPRD2	Q5VT52	1461 aa	Known RBP	10.38	□□□□□ -0.75
HNRNPU-223	ENST00000640001	WDR43	Q15061	677 aa	Known RBP eCLIP	10.38	□□□□□ -0.75	2e-6	■■□□□ 13.5
HNRNPU-223	ENST00000640001	B4GALNT3	Q6L9W6	998 aa		10.37	□□□□□ -0.75
HNRNPU-223	ENST00000640001	TSHZ2	Q9NRE2	1034 aa		10.36	□□□□□ -0.75
HNRNPU-223	ENST00000640001	STAG3	Q9UJ98	1225 aa		10.36	□□□□□ -0.75
HNRNPU-223	ENST00000640001	NBPF1	Q3BBV0	1214 aa		10.35	□□□□□ -0.75
HNRNPU-223	ENST00000640001	CCDC141	Q6ZP82	1450 aa		10.35	□□□□□ -0.75
HNRNPU-223	ENST00000640001	KTN1	Q86UP2	1357 aa	Known RBP	10.35	□□□□□ -0.75
HNRNPU-223	ENST00000640001	PPP4R2	Q9NY27	417 aa		10.35	□□□□□ -0.75
HNRNPU-223	ENST00000640001	CDCA8	Q53HL2	280 aa		10.34	□□□□□ -0.75
HNRNPU-223	ENST00000640001	KDM6B	O15054	1643 aa		10.34	□□□□□ -0.75
HNRNPU-223	ENST00000640001	RALBP1	Q15311	655 aa		10.33	□□□□□ -0.76
HNRNPU-223	ENST00000640001	DNMT1	P26358	1616 aa	Known RBP	10.33	□□□□□ -0.76
HNRNPU-223	ENST00000640001	OSCAR	Q8IYS5	282 aa		10.31	□□□□□ -0.76
HNRNPU-223	ENST00000640001	PANK3	Q9H999	370 aa		10.31	□□□□□ -0.76
HNRNPU-223	ENST00000640001	ITSN2	Q9NZM3	1697 aa		10.31	□□□□□ -0.76
HNRNPU-223	ENST00000640001	ZBED9	Q6R2W3	1325 aa		10.31	□□□□□ -0.76
HNRNPU-223	ENST00000640001	LRRIQ1	Q96JM4	1722 aa		10.31	□□□□□ -0.76
HNRNPU-223	ENST00000640001	PZP	P20742	1482 aa		10.3	□□□□□ -0.76
HNRNPU-223	ENST00000640001	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.3	□□□□□ -0.76
HNRNPU-223	ENST00000640001	NLRP13	Q86W25	1043 aa		10.3	□□□□□ -0.76
HNRNPU-223	ENST00000640001	CANX	P27824	592 aa	Known RBP	10.3	□□□□□ -0.76
HNRNPU-223	ENST00000640001	TNNT2	P45379	298 aa	Predicted RBP	10.3	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms