RNA–Protein interactions for RNA: ENST00000639568.1

PTP4A1-207, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 5

Gene PTP4A1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-207ENST00000639568 STRCQ7RTU9 1775 aa18.95■□□□□ 0.62
PTP4A1-207ENST00000639568 ARHGEF12Q9NZN5 1544 aa18.95■□□□□ 0.62
PTP4A1-207ENST00000639568 CFAP74Q9C0B2 1584 aa18.94■□□□□ 0.62
PTP4A1-207ENST00000639568 UBAP1LF5GYI3 381 aa18.94■□□□□ 0.62
PTP4A1-207ENST00000639568 ATP10AO60312 1499 aa18.93■□□□□ 0.62
PTP4A1-207ENST00000639568 SIGLEC1Q9BZZ2 1709 aa18.92■□□□□ 0.62
PTP4A1-207ENST00000639568 RAPGEF6Q8TEU7 1601 aa18.92■□□□□ 0.62
PTP4A1-207ENST00000639568 C9orf84Q5VXU9 1444 aa18.91■□□□□ 0.62
PTP4A1-207ENST00000639568 SCAPERQ9BY12 1400 aa18.91■□□□□ 0.62
PTP4A1-207ENST00000639568 HECW1Q76N89 1606 aa18.9■□□□□ 0.62
PTP4A1-207ENST00000639568 LTBP4Q8N2S1 1624 aa18.9■□□□□ 0.62
PTP4A1-207ENST00000639568 ESF1Q9H501 851 aaKnown RBP18.9■□□□□ 0.62
PTP4A1-207ENST00000639568 NUP153P49790 1475 aaKnown RBP18.89■□□□□ 0.61
PTP4A1-207ENST00000639568 PRXQ9BXM0 1461 aa18.88■□□□□ 0.61
PTP4A1-207ENST00000639568 MYT1LQ9UL68 1186 aa18.87■□□□□ 0.61
PTP4A1-207ENST00000639568 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.85■□□□□ 0.61
PTP4A1-207ENST00000639568 RANGAP1P46060 587 aaPredicted RBP18.83■□□□□ 0.6
PTP4A1-207ENST00000639568 EFCAB2Q5VUJ9 269 aa18.81■□□□□ 0.6
PTP4A1-207ENST00000639568 NCOA1Q15788 1441 aa18.81■□□□□ 0.6
PTP4A1-207ENST00000639568 TRAPPC8Q9Y2L5 1435 aa18.81■□□□□ 0.6
PTP4A1-207ENST00000639568 SCAF1Q9H7N4 1312 aaKnown RBP18.8■□□□□ 0.6
PTP4A1-207ENST00000639568 PLCH2O75038 1416 aa18.8■□□□□ 0.6
PTP4A1-207ENST00000639568 ZNF335Q9H4Z2 1342 aaPredicted RBP18.79■□□□□ 0.6
PTP4A1-207ENST00000639568 PHF23Q9BUL5 403 aaPredicted RBP18.79■□□□□ 0.6
PTP4A1-207ENST00000639568 SETD1BQ9UPS6 1966 aaKnown RBP18.79■□□□□ 0.6
PTP4A1-207ENST00000639568 SAMD9Q5K651 1589 aa18.78■□□□□ 0.6
PTP4A1-207ENST00000639568 HSPA1LP34931 641 aa18.75■□□□□ 0.59
PTP4A1-207ENST00000639568 AFAP1Q8N556 730 aa18.75■□□□□ 0.59
PTP4A1-207ENST00000639568 NCKAP5LQ9HCH0 1330 aa18.74■□□□□ 0.59
PTP4A1-207ENST00000639568 PIP4K2BP78356 416 aa18.74■□□□□ 0.59
PTP4A1-207ENST00000639568 ZNF518AQ6AHZ1 1483 aa18.73■□□□□ 0.59
PTP4A1-207ENST00000639568 MED1Q15648 1581 aaPredicted RBP18.71■□□□□ 0.59
PTP4A1-207ENST00000639568 TOM1O60784 492 aa18.69■□□□□ 0.58
PTP4A1-207ENST00000639568 PKD2Q13563 968 aa18.69■□□□□ 0.58
PTP4A1-207ENST00000639568 CAMSAP1Q5T5Y3 1602 aa18.69■□□□□ 0.58
PTP4A1-207ENST00000639568 CNTLNQ9NXG0 1405 aa18.67■□□□□ 0.58
PTP4A1-207ENST00000639568 C3P01024 1663 aa18.67■□□□□ 0.58
PTP4A1-207ENST00000639568 ATP1B4Q9UN42 357 aaPredicted RBP18.65■□□□□ 0.58
PTP4A1-207ENST00000639568 CDK11AQ9UQ88 783 aaPredicted RBP18.65■□□□□ 0.58
PTP4A1-207ENST00000639568 CSRNP3Q8WYN3 585 aa18.64■□□□□ 0.57
PTP4A1-207ENST00000639568 PPP6R1Q9UPN7 881 aa18.64■□□□□ 0.57
PTP4A1-207ENST00000639568 NPATQ14207 1427 aa18.64■□□□□ 0.57
PTP4A1-207ENST00000639568 AGLP35573 1532 aa18.62■□□□□ 0.57
PTP4A1-207ENST00000639568 REREQ9P2R6 1566 aa18.61■□□□□ 0.57
PTP4A1-207ENST00000639568 DIP2CQ9Y2E4 1556 aa18.61■□□□□ 0.57
PTP4A1-207ENST00000639568 CDK13Q14004 1512 aaKnown RBP18.61■□□□□ 0.57
PTP4A1-207ENST00000639568 KDM5CP41229 1560 aa18.6■□□□□ 0.57
PTP4A1-207ENST00000639568 ARHGAP5Q13017 1502 aa18.59■□□□□ 0.57
PTP4A1-207ENST00000639568 ZMYM3Q14202 1370 aa18.59■□□□□ 0.57
PTP4A1-207ENST00000639568 MLH3Q9UHC1 1453 aa18.58■□□□□ 0.57
PTP4A1-207ENST00000639568 PLA2R1Q13018 1463 aa18.57■□□□□ 0.56
PTP4A1-207ENST00000639568 MYO5CQ9NQX4 1742 aa18.54■□□□□ 0.56
PTP4A1-207ENST00000639568 TCOF1Q13428 1488 aaKnown RBP18.53■□□□□ 0.56
PTP4A1-207ENST00000639568 ABCA6Q8N139 1617 aa18.53■□□□□ 0.56
PTP4A1-207ENST00000639568 SENP3Q9H4L4 574 aaPredicted RBP18.51■□□□□ 0.55
PTP4A1-207ENST00000639568 CLIP1P30622 1438 aa18.5■□□□□ 0.55
PTP4A1-207ENST00000639568 PTPRKQ15262 1439 aa18.49■□□□□ 0.55
PTP4A1-207ENST00000639568 CPS1P31327 1500 aa18.49■□□□□ 0.55
PTP4A1-207ENST00000639568 KIF14Q15058 1648 aa18.48■□□□□ 0.55
PTP4A1-207ENST00000639568 TROQ12816 1431 aaPredicted RBP18.46■□□□□ 0.55
PTP4A1-207ENST00000639568 CEP170BQ9Y4F5 1589 aaPredicted RBP18.46■□□□□ 0.55
PTP4A1-207ENST00000639568 SHANK2Q9UPX8 1470 aa18.45■□□□□ 0.54
PTP4A1-207ENST00000639568 MROH2AA6NES4 1674 aa18.44■□□□□ 0.54
PTP4A1-207ENST00000639568 FMN1Q68DA7 1419 aa18.43■□□□□ 0.54
PTP4A1-207ENST00000639568 GGT6Q6P531 493 aa18.43■□□□□ 0.54
PTP4A1-207ENST00000639568 MYO3AQ8NEV4 1616 aa18.42■□□□□ 0.54
PTP4A1-207ENST00000639568 RGS17Q9UGC6 210 aaPredicted RBP18.41■□□□□ 0.54
PTP4A1-207ENST00000639568 SPAG9O60271 1321 aaKnown RBP18.41■□□□□ 0.54
PTP4A1-207ENST00000639568 ZNF142P52746 1687 aaPredicted RBP18.41■□□□□ 0.54
PTP4A1-207ENST00000639568 ABCC1P33527 1531 aa18.39■□□□□ 0.54
PTP4A1-207ENST00000639568 SUPT6HQ7KZ85 1726 aaKnown RBP18.38■□□□□ 0.53
PTP4A1-207ENST00000639568 ANKLE2Q86XL3 938 aa18.38■□□□□ 0.53
PTP4A1-207ENST00000639568 ZNF777Q9ULD5 760 aaPredicted RBP18.38■□□□□ 0.53
PTP4A1-207ENST00000639568 A2ML1A8K2U0 1454 aa18.38■□□□□ 0.53
PTP4A1-207ENST00000639568 KIDINS220Q9ULH0 1771 aa18.37■□□□□ 0.53
PTP4A1-207ENST00000639568 EEA1Q15075 1411 aa18.34■□□□□ 0.53
PTP4A1-207ENST00000639568 CLTCQ00610 1675 aaKnown RBP18.34■□□□□ 0.53
PTP4A1-207ENST00000639568 CDC42BPBQ9Y5S2 1711 aa18.32■□□□□ 0.52
PTP4A1-207ENST00000639568 ITSN2Q9NZM3 1697 aa18.31■□□□□ 0.52
PTP4A1-207ENST00000639568 DNMT1P26358 1616 aaKnown RBP18.31■□□□□ 0.52
PTP4A1-207ENST00000639568 HNRNPMP52272 730 aaKnown RBP eCLIP18.31■□□□□ 0.52
PTP4A1-207ENST00000639568 THEMISQ8N1K5 641 aaPredicted RBP18.31■□□□□ 0.52
PTP4A1-207ENST00000639568 SAMD9LQ8IVG5 1584 aa18.3■□□□□ 0.52
PTP4A1-207ENST00000639568 A2MP01023 1474 aa18.3■□□□□ 0.52
PTP4A1-207ENST00000639568 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.3■□□□□ 0.52
PTP4A1-207ENST00000639568 UBTFP17480 764 aaKnown RBP18.29■□□□□ 0.52
PTP4A1-207ENST00000639568 POTEAQ6S8J7 498 aa18.29■□□□□ 0.52
PTP4A1-207ENST00000639568 PREX2Q70Z35 1606 aa18.29■□□□□ 0.52
PTP4A1-207ENST00000639568 TNRQ92752 1358 aa18.29■□□□□ 0.52
PTP4A1-207ENST00000639568 ALKQ9UM73 1620 aa18.28■□□□□ 0.52
PTP4A1-207ENST00000639568 NEURL4Q96JN8 1562 aa18.27■□□□□ 0.52
PTP4A1-207ENST00000639568 NPHP4O75161 1426 aaPredicted RBP18.27■□□□□ 0.52
PTP4A1-207ENST00000639568 FBXO31Q5XUX0 539 aaPredicted RBP18.27■□□□□ 0.52
PTP4A1-207ENST00000639568 VWDEQ8N2E2 1590 aa18.26■□□□□ 0.51
PTP4A1-207ENST00000639568 EHMT2Q96KQ7 1210 aa18.26■□□□□ 0.51
PTP4A1-207ENST00000639568 ATP7AQ04656 1500 aa18.23■□□□□ 0.51
PTP4A1-207ENST00000639568 POLR1AO95602 1720 aaPredicted RBP18.23■□□□□ 0.51
PTP4A1-207ENST00000639568 SYCP2Q9BX26 1530 aa18.23■□□□□ 0.51
PTP4A1-207ENST00000639568 PLXNC1O60486 1568 aa18.22■□□□□ 0.51
PTP4A1-207ENST00000639568 LRRC7Q96NW7 1537 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms