RNA–Protein interactions for RNA: ENST00000639568.1

PTP4A1-207, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 5

Gene PTP4A1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-207ENST00000639568 NISCHQ9Y2I1 1504 aa28.32■■■□□ 2.12
PTP4A1-207ENST00000639568 ABCC9O60706 1549 aa26.62■■□□□ 1.85
PTP4A1-207ENST00000639568 DNAJC5BQ9UF47 199 aa25.7■■□□□ 1.7
PTP4A1-207ENST00000639568 CCDC180Q9P1Z9 1646 aa25.66■■□□□ 1.7
PTP4A1-207ENST00000639568 RB1CC1Q8TDY2 1594 aa24.93■■□□□ 1.58
PTP4A1-207ENST00000639568 PABPN1Q86U42 306 aaKnown RBP eCLIP24.74■■□□□ 1.55
PTP4A1-207ENST00000639568 NACADO15069 1562 aa24.55■■□□□ 1.52
PTP4A1-207ENST00000639568 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
PTP4A1-207ENST00000639568 DNAJC5Q9H3Z4 198 aa24.25■■□□□ 1.47
PTP4A1-207ENST00000639568 BICRAQ9NZM4 1560 aa24.14■■□□□ 1.45
PTP4A1-207ENST00000639568 UNC13AQ9UPW8 1703 aa24.14■■□□□ 1.45
PTP4A1-207ENST00000639568 CECR2Q9BXF3 1484 aa24.07■■□□□ 1.44
PTP4A1-207ENST00000639568 MYO15BQ96JP2 1530 aa23.93■■□□□ 1.42
PTP4A1-207ENST00000639568 CC2D2AQ9P2K1 1620 aa23.92■■□□□ 1.42
PTP4A1-207ENST00000639568 SHROOM4Q9ULL8 1493 aa23.81■■□□□ 1.4
PTP4A1-207ENST00000639568 EIF4G1Q04637 1599 aaKnown RBP23.69■■□□□ 1.38
PTP4A1-207ENST00000639568 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
PTP4A1-207ENST00000639568 DCAF1Q9Y4B6 1507 aa23.32■■□□□ 1.32
PTP4A1-207ENST00000639568 CUX2O14529 1486 aa23.27■■□□□ 1.32
PTP4A1-207ENST00000639568 ZCCHC6Q5VYS8 1495 aaKnown RBP23.27■■□□□ 1.32
PTP4A1-207ENST00000639568 ERCC6Q03468 1493 aa23.11■■□□□ 1.29
PTP4A1-207ENST00000639568 TRIM41Q8WV44 630 aa22.93■■□□□ 1.26
PTP4A1-207ENST00000639568 NCAPD3P42695 1498 aa22.72■■□□□ 1.23
PTP4A1-207ENST00000639568 NESP48681 1621 aa22.59■■□□□ 1.21
PTP4A1-207ENST00000639568 ATAD2BQ9ULI0 1458 aa22.52■■□□□ 1.2
PTP4A1-207ENST00000639568 THOC2Q8NI27 1593 aaKnown RBP22.43■■□□□ 1.18
PTP4A1-207ENST00000639568 SMARCA2P51531 1590 aa22.41■■□□□ 1.18
PTP4A1-207ENST00000639568 HMGXB3Q12766 1538 aa22.41■■□□□ 1.18
PTP4A1-207ENST00000639568 PDS5BQ9NTI5 1447 aa22.31■■□□□ 1.16
PTP4A1-207ENST00000639568 BAZ1BQ9UIG0 1483 aaKnown RBP22.29■■□□□ 1.16
PTP4A1-207ENST00000639568 LAMC3Q9Y6N6 1575 aa22.29■■□□□ 1.16
PTP4A1-207ENST00000639568 SMARCA4P51532 1647 aa22.22■■□□□ 1.15
PTP4A1-207ENST00000639568 OSCARQ8IYS5 282 aa22.2■■□□□ 1.14
PTP4A1-207ENST00000639568 KIF21AQ7Z4S6 1674 aa22.15■■□□□ 1.14
PTP4A1-207ENST00000639568 MRC2Q9UBG0 1479 aa22.09■■□□□ 1.13
PTP4A1-207ENST00000639568 BAZ1AQ9NRL2 1556 aaPredicted RBP22.07■■□□□ 1.12
PTP4A1-207ENST00000639568 CADPSQ9ULU8 1353 aa22.03■■□□□ 1.12
PTP4A1-207ENST00000639568 WDR62O43379 1518 aa22.01■■□□□ 1.11
PTP4A1-207ENST00000639568 PEG3Q9GZU2 1588 aa21.99■■□□□ 1.11
PTP4A1-207ENST00000639568 CEP164Q9UPV0 1460 aa21.85■■□□□ 1.09
PTP4A1-207ENST00000639568 TRHP20396 242 aaPredicted RBP21.81■■□□□ 1.08
PTP4A1-207ENST00000639568 AEBP2Q6ZN18 517 aaPredicted RBP21.81■■□□□ 1.08
PTP4A1-207ENST00000639568 MROH2BQ7Z745 1585 aa21.8■■□□□ 1.08
PTP4A1-207ENST00000639568 RIMBP3CA6NJZ7 1639 aa21.8■■□□□ 1.08
PTP4A1-207ENST00000639568 RIMBP3BA6NNM3 1639 aa21.8■■□□□ 1.08
PTP4A1-207ENST00000639568 RIMBP3Q9UFD9 1639 aa21.8■■□□□ 1.08
PTP4A1-207ENST00000639568 FANCD2Q9BXW9 1451 aa21.76■■□□□ 1.07
PTP4A1-207ENST00000639568 CYB5RLQ6IPT4 315 aa21.74■■□□□ 1.07
PTP4A1-207ENST00000639568 ARHGEF11O15085 1522 aa21.7■■□□□ 1.06
PTP4A1-207ENST00000639568 URB2Q14146 1524 aaKnown RBP21.58■■□□□ 1.04
PTP4A1-207ENST00000639568 CFTRP13569 1480 aa21.56■■□□□ 1.04
PTP4A1-207ENST00000639568 ZNF608Q9ULD9 1512 aaPredicted RBP21.46■■□□□ 1.03
PTP4A1-207ENST00000639568 WIZO95785 1651 aa21.46■■□□□ 1.03
PTP4A1-207ENST00000639568 IFT140Q96RY7 1462 aa21.45■■□□□ 1.03
PTP4A1-207ENST00000639568 ARAP1Q96P48 1450 aa21.42■■□□□ 1.02
PTP4A1-207ENST00000639568 FBLN2P98095 1184 aa21.38■■□□□ 1.01
PTP4A1-207ENST00000639568 RSF1Q96T23 1441 aaPredicted RBP21.33■■□□□ 1.01
PTP4A1-207ENST00000639568 EIF4G3O43432 1585 aaKnown RBP21.24■□□□□ 0.99
PTP4A1-207ENST00000639568 AQRO60306 1485 aaKnown RBP eCLIP21.22■□□□□ 0.997e-7■■□□□ 12.3
PTP4A1-207ENST00000639568 TOPBP1Q92547 1522 aa21.22■□□□□ 0.99
PTP4A1-207ENST00000639568 CHD1O14646 1710 aa21.18■□□□□ 0.98
PTP4A1-207ENST00000639568 TOP2AP11388 1531 aaKnown RBP21.17■□□□□ 0.98
PTP4A1-207ENST00000639568 ABCC8Q09428 1581 aa21.17■□□□□ 0.98
PTP4A1-207ENST00000639568 CHMP7Q8WUX9 453 aaPredicted RBP21.07■□□□□ 0.96
PTP4A1-207ENST00000639568 PRDM2Q13029 1718 aa21.05■□□□□ 0.96
PTP4A1-207ENST00000639568 DNMBPQ6XZF7 1577 aa21.04■□□□□ 0.96
PTP4A1-207ENST00000639568 TARBP1Q13395 1621 aaKnown RBP21.02■□□□□ 0.96
PTP4A1-207ENST00000639568 TDRD9Q8NDG6 1382 aaKnown RBP20.99■□□□□ 0.95
PTP4A1-207ENST00000639568 CCDC88BA6NC98 1476 aa20.99■□□□□ 0.95
PTP4A1-207ENST00000639568 CLASP1Q7Z460 1538 aa20.98■□□□□ 0.95
PTP4A1-207ENST00000639568 POLA1P09884 1462 aaPredicted RBP20.95■□□□□ 0.94
PTP4A1-207ENST00000639568 SYNJ1O43426 1573 aa20.95■□□□□ 0.94
PTP4A1-207ENST00000639568 SNAPC4Q5SXM2 1469 aa20.94■□□□□ 0.94
PTP4A1-207ENST00000639568 SOGA1O94964 1423 aa20.92■□□□□ 0.94
PTP4A1-207ENST00000639568 GAPVD1Q14C86 1478 aa20.92■□□□□ 0.94
PTP4A1-207ENST00000639568 RAD54L2Q9Y4B4 1467 aa20.91■□□□□ 0.94
PTP4A1-207ENST00000639568 ILDR1Q86SU0 546 aaPredicted RBP20.88■□□□□ 0.93
PTP4A1-207ENST00000639568 MAGI1Q96QZ7 1491 aaPredicted RBP20.86■□□□□ 0.93
PTP4A1-207ENST00000639568 SYNJ2O15056 1496 aa20.81■□□□□ 0.92
PTP4A1-207ENST00000639568 GRIN2BQ13224 1484 aa20.8■□□□□ 0.92
PTP4A1-207ENST00000639568 WDR97A6NE52 1622 aa20.77■□□□□ 0.92
PTP4A1-207ENST00000639568 FGD5Q6ZNL6 1462 aa20.71■□□□□ 0.91
PTP4A1-207ENST00000639568 KDM4FA0A1W2PPD8 638 aa20.62■□□□□ 0.89
PTP4A1-207ENST00000639568 CHIC1Q5VXU3 224 aa20.62■□□□□ 0.89
PTP4A1-207ENST00000639568 ERCC6L2Q5T890 1561 aa20.59■□□□□ 0.89
PTP4A1-207ENST00000639568 FAM69CQ0P6D2 419 aa20.59■□□□□ 0.89
PTP4A1-207ENST00000639568 CUX1P39880 1505 aa20.53■□□□□ 0.88
PTP4A1-207ENST00000639568 NPM1P06748 294 aaKnown RBP eCLIP20.52■□□□□ 0.88
PTP4A1-207ENST00000639568 CEP170Q5SW79 1584 aa20.51■□□□□ 0.87
PTP4A1-207ENST00000639568 GRIN2AQ12879 1464 aa20.5■□□□□ 0.87
PTP4A1-207ENST00000639568 PBRM1Q86U86 1689 aa20.49■□□□□ 0.87
PTP4A1-207ENST00000639568 KIF13AQ9H1H9 1805 aa20.48■□□□□ 0.87
PTP4A1-207ENST00000639568 NUP160Q12769 1436 aa20.45■□□□□ 0.86
PTP4A1-207ENST00000639568 ABCC10Q5T3U5 1492 aa20.45■□□□□ 0.86
PTP4A1-207ENST00000639568 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
PTP4A1-207ENST00000639568 PRG4Q92954 1404 aaPredicted RBP20.39■□□□□ 0.85
PTP4A1-207ENST00000639568 KDM6BO15054 1643 aa20.38■□□□□ 0.85
PTP4A1-207ENST00000639568 ABCA5Q8WWZ7 1642 aa20.38■□□□□ 0.85
PTP4A1-207ENST00000639568 SHROOM2Q13796 1616 aa20.36■□□□□ 0.85
PTP4A1-207ENST00000639568 JPH4Q96JJ6 628 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms