RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 MAPKBP1O60336 1514 aa17.7■□□□□ 0.42
CLN6-223ENST00000637823 ABCA9Q8IUA7 1624 aa17.69■□□□□ 0.42
CLN6-223ENST00000637823 CAMSAP2Q08AD1 1489 aa17.68■□□□□ 0.42
CLN6-223ENST00000637823 ZNF644Q9H582 1327 aaPredicted RBP17.68■□□□□ 0.42
CLN6-223ENST00000637823 PLCH2O75038 1416 aa17.67■□□□□ 0.42
CLN6-223ENST00000637823 ZNF777Q9ULD5 760 aaPredicted RBP17.67■□□□□ 0.42
CLN6-223ENST00000637823 ARAP3Q8WWN8 1544 aa17.66■□□□□ 0.42
CLN6-223ENST00000637823 DNMT1P26358 1616 aaKnown RBP17.65■□□□□ 0.42
CLN6-223ENST00000637823 ARHGAP5Q13017 1502 aa17.65■□□□□ 0.42
CLN6-223ENST00000637823 EFCAB2Q5VUJ9 269 aa17.63■□□□□ 0.41
CLN6-223ENST00000637823 PTPRKQ15262 1439 aa17.63■□□□□ 0.41
CLN6-223ENST00000637823 SAMD9LQ8IVG5 1584 aa17.62■□□□□ 0.41
CLN6-223ENST00000637823 DAPK1P53355 1430 aa17.62■□□□□ 0.41
CLN6-223ENST00000637823 ABCC5O15440 1437 aa17.61■□□□□ 0.41
CLN6-223ENST00000637823 PLEKHH2Q8IVE3 1493 aa17.61■□□□□ 0.41
CLN6-223ENST00000637823 RSPH4AQ5TD94 716 aa17.6■□□□□ 0.41
CLN6-223ENST00000637823 ARHGEF5Q12774 1597 aa17.6■□□□□ 0.41
CLN6-223ENST00000637823 CROCC2H7BZ55 1655 aa17.59■□□□□ 0.41
CLN6-223ENST00000637823 SETD5Q9C0A6 1442 aa17.59■□□□□ 0.41
CLN6-223ENST00000637823 GLI2P10070 1586 aa17.58■□□□□ 0.41
CLN6-223ENST00000637823 KIAA1107Q9UPP5 1409 aa17.58■□□□□ 0.41
CLN6-223ENST00000637823 HRCP23327 699 aa17.57■□□□□ 0.4
CLN6-223ENST00000637823 HNRNPMP52272 730 aaKnown RBP eCLIP17.57■□□□□ 0.4
CLN6-223ENST00000637823 CD109Q6YHK3 1445 aa17.56■□□□□ 0.4
CLN6-223ENST00000637823 ADGBQ8N7X0 1667 aa17.56■□□□□ 0.4
CLN6-223ENST00000637823 CHIC2Q9UKJ5 165 aa17.56■□□□□ 0.4
CLN6-223ENST00000637823 MBD5Q9P267 1494 aa17.56■□□□□ 0.4
CLN6-223ENST00000637823 AKNAQ7Z591 1439 aa17.55■□□□□ 0.4
CLN6-223ENST00000637823 ROCK1Q13464 1354 aa17.55■□□□□ 0.4
CLN6-223ENST00000637823 HFM1A2PYH4 1435 aa17.55■□□□□ 0.4
CLN6-223ENST00000637823 FANCAO15360 1455 aa17.54■□□□□ 0.4
CLN6-223ENST00000637823 MAP3K4Q9Y6R4 1608 aa17.54■□□□□ 0.4
CLN6-223ENST00000637823 CFAP74Q9C0B2 1584 aa17.53■□□□□ 0.4
CLN6-223ENST00000637823 SYCP2Q9BX26 1530 aa17.53■□□□□ 0.4
CLN6-223ENST00000637823 SHANK2Q9UPX8 1470 aa17.53■□□□□ 0.4
CLN6-223ENST00000637823 TSPY4P0CV99 314 aa17.53■□□□□ 0.4
CLN6-223ENST00000637823 TSPY10P0CW01 314 aa17.53■□□□□ 0.4
CLN6-223ENST00000637823 ABCC1P33527 1531 aa17.52■□□□□ 0.4
CLN6-223ENST00000637823 GCC2Q8IWJ2 1684 aa17.52■□□□□ 0.4
CLN6-223ENST00000637823 CCDC141Q6ZP82 1450 aa17.52■□□□□ 0.4
CLN6-223ENST00000637823 DIP2BQ9P265 1576 aa17.52■□□□□ 0.39
CLN6-223ENST00000637823 RAB3GAP2Q9H2M9 1393 aa17.52■□□□□ 0.39
CLN6-223ENST00000637823 NAIPQ13075 1403 aa17.51■□□□□ 0.39
CLN6-223ENST00000637823 ADGRL2O95490 1459 aa17.5■□□□□ 0.39
CLN6-223ENST00000637823 RRP7BPQ9NSQ0 103 aa17.5■□□□□ 0.39
CLN6-223ENST00000637823 ARHGEF12Q9NZN5 1544 aa17.5■□□□□ 0.39
CLN6-223ENST00000637823 FAM69CQ0P6D2 419 aa17.49■□□□□ 0.39
CLN6-223ENST00000637823 CCER1Q8TC90 406 aaPredicted RBP17.49■□□□□ 0.39
CLN6-223ENST00000637823 MAST1Q9Y2H9 1570 aa17.49■□□□□ 0.39
CLN6-223ENST00000637823 NCOA1Q15788 1441 aa17.48■□□□□ 0.39
CLN6-223ENST00000637823 C9orf84Q5VXU9 1444 aa17.48■□□□□ 0.39
CLN6-223ENST00000637823 KIF13AQ9H1H9 1805 aa17.48■□□□□ 0.39
CLN6-223ENST00000637823 ANKRD30AQ9BXX3 1397 aa17.48■□□□□ 0.39
CLN6-223ENST00000637823 ACIN1Q9UKV3 1341 aaKnown RBP17.47■□□□□ 0.39
CLN6-223ENST00000637823 NEO1Q92859 1461 aa17.46■□□□□ 0.39
CLN6-223ENST00000637823 ADGRL1O94910 1474 aa17.45■□□□□ 0.38
CLN6-223ENST00000637823 SCAPERQ9BY12 1400 aa17.45■□□□□ 0.38
CLN6-223ENST00000637823 TSPOAP1O95153 1857 aa17.44■□□□□ 0.38
CLN6-223ENST00000637823 TRAPPC8Q9Y2L5 1435 aa17.44■□□□□ 0.38
CLN6-223ENST00000637823 ZEB1P37275 1124 aaPredicted RBP17.41■□□□□ 0.38
CLN6-223ENST00000637823 DHX57Q6P158 1386 aaKnown RBP17.4■□□□□ 0.38
CLN6-223ENST00000637823 PLXNC1O60486 1568 aa17.4■□□□□ 0.38
CLN6-223ENST00000637823 KDM6BO15054 1643 aa17.4■□□□□ 0.38
CLN6-223ENST00000637823 RTEL1-TNFRSF6BF6WH68 1400 aa17.4■□□□□ 0.38
CLN6-223ENST00000637823 PPRC1Q5VV67 1664 aaKnown RBP17.4■□□□□ 0.38
CLN6-223ENST00000637823 AFAP1Q8N556 730 aa17.4■□□□□ 0.38
CLN6-223ENST00000637823 SPAG9O60271 1321 aaKnown RBP17.4■□□□□ 0.38
CLN6-223ENST00000637823 TEX14Q8IWB6 1497 aa17.38■□□□□ 0.37
CLN6-223ENST00000637823 CLSPNQ9HAW4 1339 aa17.38■□□□□ 0.37
CLN6-223ENST00000637823 KIF15Q9NS87 1388 aa17.38■□□□□ 0.37
CLN6-223ENST00000637823 ZNF518AQ6AHZ1 1483 aa17.37■□□□□ 0.37
CLN6-223ENST00000637823 ANKRD50Q9ULJ7 1429 aa17.36■□□□□ 0.37
CLN6-223ENST00000637823 POGZQ7Z3K3 1410 aa17.35■□□□□ 0.37
CLN6-223ENST00000637823 DENND4BO75064 1496 aaPredicted RBP17.35■□□□□ 0.37
CLN6-223ENST00000637823 INO80Q9ULG1 1556 aaPredicted RBP17.35■□□□□ 0.37
CLN6-223ENST00000637823 ATP7AQ04656 1500 aa17.34■□□□□ 0.37
CLN6-223ENST00000637823 DUOX2Q9NRD8 1548 aa17.34■□□□□ 0.37
CLN6-223ENST00000637823 KDM5CP41229 1560 aa17.33■□□□□ 0.37
CLN6-223ENST00000637823 ZFYVE16Q7Z3T8 1539 aa17.33■□□□□ 0.37
CLN6-223ENST00000637823 TRIM52Q96A61 297 aa17.33■□□□□ 0.36
CLN6-223ENST00000637823 RICTORQ6R327 1708 aa17.33■□□□□ 0.36
CLN6-223ENST00000637823 KIDINS220Q9ULH0 1771 aa17.32■□□□□ 0.36
CLN6-223ENST00000637823 MLH3Q9UHC1 1453 aa17.31■□□□□ 0.36
CLN6-223ENST00000637823 MYT1LQ9UL68 1186 aa17.3■□□□□ 0.36
CLN6-223ENST00000637823 HECW2Q9P2P5 1572 aa17.28■□□□□ 0.36
CLN6-223ENST00000637823 RAPGEF3O95398 923 aa17.28■□□□□ 0.36
CLN6-223ENST00000637823 ERBINQ96RT1 1412 aa17.28■□□□□ 0.36
CLN6-223ENST00000637823 MPHOSPH9Q99550 1183 aa17.26■□□□□ 0.35
CLN6-223ENST00000637823 FRMPD1Q5SYB0 1578 aa17.24■□□□□ 0.35
CLN6-223ENST00000637823 DHX29Q7Z478 1369 aaKnown RBP17.24■□□□□ 0.35
CLN6-223ENST00000637823 UNC13BO14795 1591 aa17.23■□□□□ 0.35
CLN6-223ENST00000637823 ZMYM4Q5VZL5 1548 aa17.23■□□□□ 0.35
CLN6-223ENST00000637823 KDM5DQ9BY66 1539 aa17.23■□□□□ 0.35
CLN6-223ENST00000637823 TRHP20396 242 aaPredicted RBP17.23■□□□□ 0.35
CLN6-223ENST00000637823 EIF2AK4Q9P2K8 1649 aaKnown RBP17.22■□□□□ 0.35
CLN6-223ENST00000637823 NUP155O75694 1391 aa17.22■□□□□ 0.35
CLN6-223ENST00000637823 PZPP20742 1482 aa17.21■□□□□ 0.35
CLN6-223ENST00000637823 SLC4A1APQ9BWU0 796 aaKnown RBP17.21■□□□□ 0.35
CLN6-223ENST00000637823 ABCA6Q8N139 1617 aa17.21■□□□□ 0.35
CLN6-223ENST00000637823 A2MP01023 1474 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms