RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 CLIP1P30622 1438 aa30.14■■■□□ 2.42
CLN6-220ENST00000637450 CASKIN1Q8WXD9 1431 aa30.13■■■□□ 2.41
CLN6-220ENST00000637450 ILDR1Q86SU0 546 aaPredicted RBP30.13■■■□□ 2.41
CLN6-220ENST00000637450 KIF14Q15058 1648 aa30.13■■■□□ 2.41
CLN6-220ENST00000637450 MADDQ8WXG6 1647 aa30.13■■■□□ 2.41
CLN6-220ENST00000637450 MYO5CQ9NQX4 1742 aa30.08■■■□□ 2.41
CLN6-220ENST00000637450 LRRIQ1Q96JM4 1722 aa30.07■■■□□ 2.4
CLN6-220ENST00000637450 CCDC18Q5T9S5 1454 aa30.06■■■□□ 2.4
CLN6-220ENST00000637450 AFAP1Q8N556 730 aa30.05■■■□□ 2.4
CLN6-220ENST00000637450 ARHGAP5Q13017 1502 aa30.05■■■□□ 2.4
CLN6-220ENST00000637450 ATP10AO60312 1499 aa30.04■■■□□ 2.4
CLN6-220ENST00000637450 PCF11O94913 1555 aaKnown RBP30.03■■■□□ 2.4
CLN6-220ENST00000637450 MLECQ14165 292 aa30.03■■■□□ 2.4
CLN6-220ENST00000637450 SIGLEC1Q9BZZ2 1709 aa30.02■■■□□ 2.4
CLN6-220ENST00000637450 ZNF518AQ6AHZ1 1483 aa30.01■■■□□ 2.4
CLN6-220ENST00000637450 RIMS1Q86UR5 1692 aaKnown RBP29.99■■■□□ 2.39
CLN6-220ENST00000637450 C9orf84Q5VXU9 1444 aa29.98■■■□□ 2.39
CLN6-220ENST00000637450 FYCO1Q9BQS8 1478 aa29.97■■■□□ 2.39
CLN6-220ENST00000637450 LMTK3Q96Q04 1460 aa29.95■■■□□ 2.39
CLN6-220ENST00000637450 PLPPR3Q6T4P5 718 aa29.95■■■□□ 2.39
CLN6-220ENST00000637450 KDM5CP41229 1560 aa29.94■■■□□ 2.38
CLN6-220ENST00000637450 MYT1LQ9UL68 1186 aa29.92■■■□□ 2.38
CLN6-220ENST00000637450 CDC42BPBQ9Y5S2 1711 aa29.91■■■□□ 2.38
CLN6-220ENST00000637450 ARHGEF12Q9NZN5 1544 aa29.88■■■□□ 2.37
CLN6-220ENST00000637450 TRAPPC8Q9Y2L5 1435 aa29.88■■■□□ 2.37
CLN6-220ENST00000637450 MLH3Q9UHC1 1453 aa29.87■■■□□ 2.37
CLN6-220ENST00000637450 PREX2Q70Z35 1606 aa29.87■■■□□ 2.37
CLN6-220ENST00000637450 HSPA2P54652 639 aa29.84■■■□□ 2.37
CLN6-220ENST00000637450 ABCC1P33527 1531 aa29.84■■■□□ 2.37
CLN6-220ENST00000637450 FER1L4A9Z1Z3 1794 aa29.81■■■□□ 2.36
CLN6-220ENST00000637450 DIP2CQ9Y2E4 1556 aa29.81■■■□□ 2.36
CLN6-220ENST00000637450 ZNF777Q9ULD5 760 aaPredicted RBP29.8■■■□□ 2.36
CLN6-220ENST00000637450 GPATCH8Q9UKJ3 1502 aaKnown RBP29.8■■■□□ 2.36
CLN6-220ENST00000637450 CEBPAP49715 358 aaPredicted RBP29.79■■■□□ 2.36
CLN6-220ENST00000637450 REREQ9P2R6 1566 aa29.77■■■□□ 2.36
CLN6-220ENST00000637450 CDC42BPAQ5VT25 1732 aa29.77■■■□□ 2.36
CLN6-220ENST00000637450 ITSN2Q9NZM3 1697 aa29.75■■■□□ 2.35
CLN6-220ENST00000637450 ABCA6Q8N139 1617 aa29.74■■■□□ 2.35
CLN6-220ENST00000637450 HNRNPMP52272 730 aaKnown RBP eCLIP29.73■■■□□ 2.35
CLN6-220ENST00000637450 CFDP1Q9UEE9 299 aaPredicted RBP29.73■■■□□ 2.35
CLN6-220ENST00000637450 FBXO41Q8TF61 875 aa29.72■■■□□ 2.35
CLN6-220ENST00000637450 MTUS2Q5JR59 1369 aa29.72■■■□□ 2.35
CLN6-220ENST00000637450 AGLP35573 1532 aa29.71■■■□□ 2.35
CLN6-220ENST00000637450 CCNB3Q8WWL7 1395 aa29.71■■■□□ 2.35
CLN6-220ENST00000637450 SAMD9LQ8IVG5 1584 aa29.69■■■□□ 2.34
CLN6-220ENST00000637450 KIAA1107Q9UPP5 1409 aa29.68■■■□□ 2.34
CLN6-220ENST00000637450 SPAG9O60271 1321 aaKnown RBP29.68■■■□□ 2.34
CLN6-220ENST00000637450 KIDINS220Q9ULH0 1771 aa29.67■■■□□ 2.34
CLN6-220ENST00000637450 CEP162Q5TB80 1403 aa29.67■■■□□ 2.34
CLN6-220ENST00000637450 SYCP2Q9BX26 1530 aa29.66■■■□□ 2.34
CLN6-220ENST00000637450 ESF1Q9H501 851 aaKnown RBP29.65■■■□□ 2.34
CLN6-220ENST00000637450 PLEKHH2Q8IVE3 1493 aa29.64■■■□□ 2.34
CLN6-220ENST00000637450 PREX1Q8TCU6 1659 aa29.58■■■□□ 2.33
CLN6-220ENST00000637450 UHRF1BP1Q6BDS2 1440 aa29.57■■■□□ 2.32
CLN6-220ENST00000637450 ZNF644Q9H582 1327 aaPredicted RBP29.57■■■□□ 2.32
CLN6-220ENST00000637450 SETD1BQ9UPS6 1966 aaKnown RBP29.55■■■□□ 2.32
CLN6-220ENST00000637450 CNTLNQ9NXG0 1405 aa29.55■■■□□ 2.32
CLN6-220ENST00000637450 EHBP1L1Q8N3D4 1523 aa29.55■■■□□ 2.32
CLN6-220ENST00000637450 ATP7AQ04656 1500 aa29.53■■■□□ 2.32
CLN6-220ENST00000637450 TIAM1Q13009 1591 aa29.52■■■□□ 2.32
CLN6-220ENST00000637450 C3P01024 1663 aa29.5■■■□□ 2.31
CLN6-220ENST00000637450 DMRT2Q9Y5R5 561 aa29.5■■■□□ 2.31
CLN6-220ENST00000637450 MBD5Q9P267 1494 aa29.49■■■□□ 2.31
CLN6-220ENST00000637450 LOC105371045A0A1W2PR82 267 aa29.49■■■□□ 2.31
CLN6-220ENST00000637450 A2MP01023 1474 aa29.48■■■□□ 2.31
CLN6-220ENST00000637450 INO80Q9ULG1 1556 aaPredicted RBP29.48■■■□□ 2.31
CLN6-220ENST00000637450 CERKQ8TCT0 537 aa29.47■■■□□ 2.31
CLN6-220ENST00000637450 ZMYM3Q14202 1370 aa29.47■■■□□ 2.31
CLN6-220ENST00000637450 PLXNC1O60486 1568 aa29.44■■■□□ 2.3
CLN6-220ENST00000637450 GGT6Q6P531 493 aa29.43■■■□□ 2.3
CLN6-220ENST00000637450 SUPT6HQ7KZ85 1726 aaKnown RBP29.42■■■□□ 2.3
CLN6-220ENST00000637450 RTEL1-TNFRSF6BF6WH68 1400 aa29.42■■■□□ 2.3
CLN6-220ENST00000637450 NCOA2Q15596 1464 aa29.42■■■□□ 2.3
CLN6-220ENST00000637450 NPATQ14207 1427 aa29.4■■■□□ 2.3
CLN6-220ENST00000637450 STRCQ7RTU9 1775 aa29.4■■■□□ 2.3
CLN6-220ENST00000637450 PPP6R1Q9UPN7 881 aa29.4■■■□□ 2.3
CLN6-220ENST00000637450 RSPH4AQ5TD94 716 aa29.38■■■□□ 2.29
CLN6-220ENST00000637450 VPS8Q8N3P4 1428 aa29.37■■■□□ 2.29
CLN6-220ENST00000637450 MROH2AA6NES4 1674 aa29.36■■■□□ 2.29
CLN6-220ENST00000637450 DHX29Q7Z478 1369 aaKnown RBP29.36■■■□□ 2.29
CLN6-220ENST00000637450 PTPRTO14522 1441 aa29.35■■■□□ 2.29
CLN6-220ENST00000637450 ADGBQ8N7X0 1667 aa29.31■■■□□ 2.28
CLN6-220ENST00000637450 CAMSAP2Q08AD1 1489 aa29.31■■■□□ 2.28
CLN6-220ENST00000637450 CCDC141Q6ZP82 1450 aa29.31■■■□□ 2.28
CLN6-220ENST00000637450 LRRC9Q6ZRR7 1453 aa29.29■■■□□ 2.28
CLN6-220ENST00000637450 PTPRKQ15262 1439 aa29.29■■■□□ 2.28
CLN6-220ENST00000637450 NCOA1Q15788 1441 aa29.29■■■□□ 2.28
CLN6-220ENST00000637450 CLTCQ00610 1675 aaKnown RBP29.28■■■□□ 2.28
CLN6-220ENST00000637450 KIF3BO15066 747 aa29.26■■■□□ 2.27
CLN6-220ENST00000637450 TSPY4P0CV99 314 aa29.25■■■□□ 2.27
CLN6-220ENST00000637450 TSPY10P0CW01 314 aa29.25■■■□□ 2.27
CLN6-220ENST00000637450 KANK4Q5T7N3 995 aaPredicted RBP29.25■■■□□ 2.27
CLN6-220ENST00000637450 CAMSAP1Q5T5Y3 1602 aa29.22■■■□□ 2.27
CLN6-220ENST00000637450 MAP3K1Q13233 1512 aa29.21■■■□□ 2.27
CLN6-220ENST00000637450 ARHGEF5Q12774 1597 aa29.2■■■□□ 2.26
CLN6-220ENST00000637450 NCKAP5LQ9HCH0 1330 aa29.2■■■□□ 2.26
CLN6-220ENST00000637450 PKD2Q13563 968 aa29.15■■■□□ 2.26
CLN6-220ENST00000637450 WASHC2CQ9Y4E1 1318 aa29.15■■■□□ 2.26
CLN6-220ENST00000637450 MYO3AQ8NEV4 1616 aa29.14■■■□□ 2.26
CLN6-220ENST00000637450 FBXO31Q5XUX0 539 aaPredicted RBP29.14■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms