RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 NISCHQ9Y2I1 1504 aa46.09■■■■■ 4.97
CLN6-220ENST00000637450 ABCC9O60706 1549 aa41.22■■■■■ 4.19
CLN6-220ENST00000637450 CCDC180Q9P1Z9 1646 aa41.2■■■■■ 4.19
CLN6-220ENST00000637450 RB1CC1Q8TDY2 1594 aa39.24■■■■□ 3.87
CLN6-220ENST00000637450 NACADO15069 1562 aa39.02■■■■□ 3.84
CLN6-220ENST00000637450 DCAF8L2P0C7V8 631 aa38.94■■■■□ 3.82
CLN6-220ENST00000637450 DNAJC5BQ9UF47 199 aa38.69■■■■□ 3.78
CLN6-220ENST00000637450 MYO15BQ96JP2 1530 aa38.55■■■■□ 3.76
CLN6-220ENST00000637450 PABPN1Q86U42 306 aaKnown RBP eCLIP38.47■■■■□ 3.75
CLN6-220ENST00000637450 UNC13AQ9UPW8 1703 aa38.23■■■■□ 3.71
CLN6-220ENST00000637450 ZCCHC6Q5VYS8 1495 aaKnown RBP38.2■■■■□ 3.71
CLN6-220ENST00000637450 BICRAQ9NZM4 1560 aa38.1■■■■□ 3.69
CLN6-220ENST00000637450 DCAF1Q9Y4B6 1507 aa38.08■■■■□ 3.69
CLN6-220ENST00000637450 SHROOM4Q9ULL8 1493 aa37.62■■■■□ 3.61
CLN6-220ENST00000637450 SCRIBQ14160 1630 aa37.58■■■■□ 3.61
CLN6-220ENST00000637450 CC2D2AQ9P2K1 1620 aa37.19■■■■□ 3.54
CLN6-220ENST00000637450 EIF4G1Q04637 1599 aaKnown RBP37.16■■■■□ 3.54
CLN6-220ENST00000637450 CECR2Q9BXF3 1484 aa37.13■■■■□ 3.54
CLN6-220ENST00000637450 NCAPD3P42695 1498 aa36.09■■■■□ 3.37
CLN6-220ENST00000637450 ATAD2BQ9ULI0 1458 aa35.97■■■■□ 3.35
CLN6-220ENST00000637450 SMARCA4P51532 1647 aa35.87■■■■□ 3.33
CLN6-220ENST00000637450 SMARCA2P51531 1590 aa35.82■■■■□ 3.32
CLN6-220ENST00000637450 HMGXB3Q12766 1538 aa35.75■■■■□ 3.31
CLN6-220ENST00000637450 BAZ1AQ9NRL2 1556 aaPredicted RBP35.74■■■■□ 3.31
CLN6-220ENST00000637450 BAZ1BQ9UIG0 1483 aaKnown RBP35.59■■■■□ 3.29
CLN6-220ENST00000637450 ERCC6Q03468 1493 aa35.57■■■■□ 3.28
CLN6-220ENST00000637450 PEG3Q9GZU2 1588 aa35.56■■■■□ 3.28
CLN6-220ENST00000637450 MROH2BQ7Z745 1585 aa35.51■■■■□ 3.27
CLN6-220ENST00000637450 CUX2O14529 1486 aa35.48■■■■□ 3.27
CLN6-220ENST00000637450 DNAJC5Q9H3Z4 198 aa35.45■■■■□ 3.27
CLN6-220ENST00000637450 NESP48681 1621 aa35.43■■■■□ 3.26
CLN6-220ENST00000637450 LAMC3Q9Y6N6 1575 aa35.17■■■■□ 3.22
CLN6-220ENST00000637450 PDS5BQ9NTI5 1447 aa35.04■■■■□ 3.2
CLN6-220ENST00000637450 WIZO95785 1651 aa35.03■■■■□ 3.2
CLN6-220ENST00000637450 CADPSQ9ULU8 1353 aa35■■■■□ 3.19
CLN6-220ENST00000637450 THOC2Q8NI27 1593 aaKnown RBP34.99■■■■□ 3.19
CLN6-220ENST00000637450 KIF21AQ7Z4S6 1674 aa34.87■■■■□ 3.17
CLN6-220ENST00000637450 RSF1Q96T23 1441 aaPredicted RBP34.86■■■■□ 3.17
CLN6-220ENST00000637450 MRC2Q9UBG0 1479 aa34.69■■■■□ 3.14
CLN6-220ENST00000637450 TOP2AP11388 1531 aaKnown RBP34.62■■■■□ 3.13
CLN6-220ENST00000637450 CFTRP13569 1480 aa34.6■■■■□ 3.13
CLN6-220ENST00000637450 WDR62O43379 1518 aa34.58■■■■□ 3.13
CLN6-220ENST00000637450 CEP164Q9UPV0 1460 aa34.56■■■■□ 3.12
CLN6-220ENST00000637450 FANCD2Q9BXW9 1451 aa34.55■■■■□ 3.12
CLN6-220ENST00000637450 CCDC88BA6NC98 1476 aa34.3■■■■□ 3.08
CLN6-220ENST00000637450 URB2Q14146 1524 aaKnown RBP34.25■■■■□ 3.07
CLN6-220ENST00000637450 PRDM2Q13029 1718 aa34.05■■■■□ 3.04
CLN6-220ENST00000637450 OSCARQ8IYS5 282 aa33.97■■■■□ 3.03
CLN6-220ENST00000637450 TOPBP1Q92547 1522 aa33.9■■■■□ 3.02
CLN6-220ENST00000637450 IFT140Q96RY7 1462 aa33.9■■■■□ 3.02
CLN6-220ENST00000637450 TRIM41Q8WV44 630 aa33.89■■■■□ 3.02
CLN6-220ENST00000637450 ABCC8Q09428 1581 aa33.85■■■■□ 3.01
CLN6-220ENST00000637450 ZNF608Q9ULD9 1512 aaPredicted RBP33.83■■■■□ 3.01
CLN6-220ENST00000637450 DNMBPQ6XZF7 1577 aa33.76■■■□□ 2.99
CLN6-220ENST00000637450 AQRO60306 1485 aaKnown RBP eCLIP33.56■■■□□ 2.962e-7■■■■□ 23.4
CLN6-220ENST00000637450 POLA1P09884 1462 aaPredicted RBP33.56■■■□□ 2.96
CLN6-220ENST00000637450 EIF4G3O43432 1585 aaKnown RBP33.56■■■□□ 2.96
CLN6-220ENST00000637450 TARBP1Q13395 1621 aaKnown RBP33.56■■■□□ 2.96
CLN6-220ENST00000637450 SOGA1O94964 1423 aa33.46■■■□□ 2.95
CLN6-220ENST00000637450 RAD54L2Q9Y4B4 1467 aa33.46■■■□□ 2.95
CLN6-220ENST00000637450 SUPT5HO00267 1087 aaKnown RBP33.41■■■□□ 2.94
CLN6-220ENST00000637450 TDRD9Q8NDG6 1382 aaKnown RBP33.39■■■□□ 2.94
CLN6-220ENST00000637450 RIMBP3CA6NJZ7 1639 aa33.37■■■□□ 2.93
CLN6-220ENST00000637450 RIMBP3BA6NNM3 1639 aa33.37■■■□□ 2.93
CLN6-220ENST00000637450 RIMBP3Q9UFD9 1639 aa33.37■■■□□ 2.93
CLN6-220ENST00000637450 FGD5Q6ZNL6 1462 aa33.36■■■□□ 2.93
CLN6-220ENST00000637450 CUX1P39880 1505 aa33.34■■■□□ 2.93
CLN6-220ENST00000637450 FBLN2P98095 1184 aa33.34■■■□□ 2.93
CLN6-220ENST00000637450 ARHGEF11O15085 1522 aa33.32■■■□□ 2.92
CLN6-220ENST00000637450 CHD1O14646 1710 aa33.25■■■□□ 2.91
CLN6-220ENST00000637450 WDR97A6NE52 1622 aa33.21■■■□□ 2.91
CLN6-220ENST00000637450 SNAPC4Q5SXM2 1469 aa33.18■■■□□ 2.9
CLN6-220ENST00000637450 CYB5RLQ6IPT4 315 aa33.16■■■□□ 2.9
CLN6-220ENST00000637450 GRIN2BQ13224 1484 aa33.13■■■□□ 2.89
CLN6-220ENST00000637450 CHMP7Q8WUX9 453 aaPredicted RBP33.13■■■□□ 2.89
CLN6-220ENST00000637450 MAGI1Q96QZ7 1491 aaPredicted RBP33.11■■■□□ 2.89
CLN6-220ENST00000637450 GAPVD1Q14C86 1478 aa33.03■■■□□ 2.88
CLN6-220ENST00000637450 ABCA10Q8WWZ4 1543 aa33.02■■■□□ 2.88
CLN6-220ENST00000637450 ARAP1Q96P48 1450 aa33.01■■■□□ 2.88
CLN6-220ENST00000637450 SYNJ2O15056 1496 aa33■■■□□ 2.87
CLN6-220ENST00000637450 CLASP1Q7Z460 1538 aa32.96■■■□□ 2.87
CLN6-220ENST00000637450 SYNJ1O43426 1573 aa32.94■■■□□ 2.86
CLN6-220ENST00000637450 WRNQ14191 1432 aaPredicted RBP eCLIP32.93■■■□□ 2.861e-9■■■■■ 46
CLN6-220ENST00000637450 ABCA5Q8WWZ7 1642 aa32.88■■■□□ 2.85
CLN6-220ENST00000637450 PBRM1Q86U86 1689 aa32.86■■■□□ 2.85
CLN6-220ENST00000637450 TOP2BQ02880 1626 aa32.81■■■□□ 2.84
CLN6-220ENST00000637450 BIVM-ERCC5R4GMW8 1640 aa32.77■■■□□ 2.84
CLN6-220ENST00000637450 TRHP20396 242 aaPredicted RBP32.74■■■□□ 2.83
CLN6-220ENST00000637450 GRIN2AQ12879 1464 aa32.68■■■□□ 2.82
CLN6-220ENST00000637450 FHAD1B1AJZ9 1412 aa32.63■■■□□ 2.81
CLN6-220ENST00000637450 ADAMTS12P58397 1594 aa32.62■■■□□ 2.81
CLN6-220ENST00000637450 NUP160Q12769 1436 aa32.6■■■□□ 2.81
CLN6-220ENST00000637450 ERICH3Q5RHP9 1530 aa32.57■■■□□ 2.8
CLN6-220ENST00000637450 CEP170Q5SW79 1584 aa32.53■■■□□ 2.8
CLN6-220ENST00000637450 ERCC6L2Q5T890 1561 aa32.46■■■□□ 2.79
CLN6-220ENST00000637450 SHROOM2Q13796 1616 aa32.37■■■□□ 2.77
CLN6-220ENST00000637450 JPH4Q96JJ6 628 aa32.34■■■□□ 2.77
CLN6-220ENST00000637450 PRG4Q92954 1404 aaPredicted RBP32.29■■■□□ 2.76
CLN6-220ENST00000637450 IGF1RP08069 1367 aa32.29■■■□□ 2.76
CLN6-220ENST00000637450 KIF27Q86VH2 1401 aa32.25■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms