RNA–Protein interactions for RNA: ENST00000633899.1

SF1-221, Transcript of splicing factor 1, human

TSL 4

Gene SF1, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-221	ENST00000633899	RICTOR	Q6R327	1708 aa		33.08	■■■□□ 2.89
SF1-221	ENST00000633899	EHBP1L1	Q8N3D4	1523 aa		33.07	■■■□□ 2.89
SF1-221	ENST00000633899	AEBP2	Q6ZN18	517 aa	Predicted RBP	33.07	■■■□□ 2.88
SF1-221	ENST00000633899	CDC42BPA	Q5VT25	1732 aa		33.07	■■■□□ 2.88
SF1-221	ENST00000633899	SCAPER	Q9BY12	1400 aa		33.02	■■■□□ 2.88
SF1-221	ENST00000633899	TIAM1	Q13009	1591 aa		33.02	■■■□□ 2.88
SF1-221	ENST00000633899	POGZ	Q7Z3K3	1410 aa		32.96	■■■□□ 2.87
SF1-221	ENST00000633899	CCNB3	Q8WWL7	1395 aa		32.96	■■■□□ 2.87
SF1-221	ENST00000633899	ZMYM4	Q5VZL5	1548 aa		32.95	■■■□□ 2.87
SF1-221	ENST00000633899	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.94	■■■□□ 2.86
SF1-221	ENST00000633899	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.93	■■■□□ 2.86
SF1-221	ENST00000633899	ITSN2	Q9NZM3	1697 aa		32.91	■■■□□ 2.86
SF1-221	ENST00000633899	ARHGEF40	Q8TER5	1519 aa		32.91	■■■□□ 2.86
SF1-221	ENST00000633899	ABCC1	P33527	1531 aa		32.89	■■■□□ 2.86
SF1-221	ENST00000633899	KDM4F	A0A1W2PPD8	638 aa		32.89	■■■□□ 2.86
SF1-221	ENST00000633899	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.89	■■■□□ 2.86
SF1-221	ENST00000633899	ZFYVE16	Q7Z3T8	1539 aa		32.88	■■■□□ 2.85
SF1-221	ENST00000633899	ZNF518A	Q6AHZ1	1483 aa		32.88	■■■□□ 2.85
SF1-221	ENST00000633899	APLP2	Q06481	763 aa		32.88	■■■□□ 2.85
SF1-221	ENST00000633899	MAP3K1	Q13233	1512 aa		32.87	■■■□□ 2.85
SF1-221	ENST00000633899	MAGI2	Q86UL8	1455 aa		32.86	■■■□□ 2.85
SF1-221	ENST00000633899	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.86	■■■□□ 2.85
SF1-221	ENST00000633899	LRRC9	Q6ZRR7	1453 aa		32.85	■■■□□ 2.85
SF1-221	ENST00000633899	SAMD9L	Q8IVG5	1584 aa		32.84	■■■□□ 2.85
SF1-221	ENST00000633899	NCOA2	Q15596	1464 aa		32.83	■■■□□ 2.85
SF1-221	ENST00000633899	MYT1L	Q9UL68	1186 aa		32.81	■■■□□ 2.84
SF1-221	ENST00000633899	KDM5C	P41229	1560 aa		32.8	■■■□□ 2.84
SF1-221	ENST00000633899	YEATS2	Q9ULM3	1422 aa		32.79	■■■□□ 2.84
SF1-221	ENST00000633899	AFAP1	Q8N556	730 aa		32.79	■■■□□ 2.84
SF1-221	ENST00000633899	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.78	■■■□□ 2.84
SF1-221	ENST00000633899	PLEKHH2	Q8IVE3	1493 aa		32.78	■■■□□ 2.84
SF1-221	ENST00000633899	HECW2	Q9P2P5	1572 aa		32.78	■■■□□ 2.84
SF1-221	ENST00000633899	SYCP2	Q9BX26	1530 aa		32.77	■■■□□ 2.84
SF1-221	ENST00000633899	ARHGEF12	Q9NZN5	1544 aa		32.77	■■■□□ 2.84
SF1-221	ENST00000633899	TRAPPC8	Q9Y2L5	1435 aa		32.75	■■■□□ 2.83
SF1-221	ENST00000633899	KANK4	Q5T7N3	995 aa	Predicted RBP	32.72	■■■□□ 2.83
SF1-221	ENST00000633899	KIAA1107	Q9UPP5	1409 aa		32.7	■■■□□ 2.83
SF1-221	ENST00000633899	BCORL1	Q5H9F3	1711 aa		32.68	■■■□□ 2.82
SF1-221	ENST00000633899	ATP10A	O60312	1499 aa		32.68	■■■□□ 2.82
SF1-221	ENST00000633899	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.68	■■■□□ 2.82
SF1-221	ENST00000633899	MLH3	Q9UHC1	1453 aa		32.67	■■■□□ 2.82
SF1-221	ENST00000633899	C9orf84	Q5VXU9	1444 aa		32.67	■■■□□ 2.82
SF1-221	ENST00000633899	ABCA6	Q8N139	1617 aa		32.63	■■■□□ 2.81
SF1-221	ENST00000633899	DIP2C	Q9Y2E4	1556 aa		32.63	■■■□□ 2.81
SF1-221	ENST00000633899	ADAMTSL3	P82987	1691 aa		32.62	■■■□□ 2.81
SF1-221	ENST00000633899	ZNF644	Q9H582	1327 aa	Predicted RBP	32.62	■■■□□ 2.81
SF1-221	ENST00000633899	KIDINS220	Q9ULH0	1771 aa		32.62	■■■□□ 2.81
SF1-221	ENST00000633899	SIGLEC1	Q9BZZ2	1709 aa		32.62	■■■□□ 2.81
SF1-221	ENST00000633899	CAMSAP2	Q08AD1	1489 aa		32.61	■■■□□ 2.81
SF1-221	ENST00000633899	SPAG9	O60271	1321 aa	Known RBP	32.6	■■■□□ 2.81
SF1-221	ENST00000633899	MADD	Q8WXG6	1647 aa		32.56	■■■□□ 2.8
SF1-221	ENST00000633899	MYOM3	Q5VTT5	1437 aa		32.55	■■■□□ 2.8
SF1-221	ENST00000633899	ATP7A	Q04656	1500 aa		32.55	■■■□□ 2.8
SF1-221	ENST00000633899	RERE	Q9P2R6	1566 aa		32.54	■■■□□ 2.8
SF1-221	ENST00000633899	INO80	Q9ULG1	1556 aa	Predicted RBP	32.53	■■■□□ 2.8
SF1-221	ENST00000633899	MLEC	Q14165	292 aa		32.53	■■■□□ 2.8
SF1-221	ENST00000633899	MBD5	Q9P267	1494 aa		32.53	■■■□□ 2.8
SF1-221	ENST00000633899	CCDC141	Q6ZP82	1450 aa		32.5	■■■□□ 2.79
SF1-221	ENST00000633899	MIA2	Q96PC5	1412 aa		32.5	■■■□□ 2.79
SF1-221	ENST00000633899	RIMS1	Q86UR5	1692 aa	Known RBP	32.5	■■■□□ 2.79
SF1-221	ENST00000633899	FER1L4	A9Z1Z3	1794 aa		32.48	■■■□□ 2.79
SF1-221	ENST00000633899	RSPH4A	Q5TD94	716 aa		32.47	■■■□□ 2.79
SF1-221	ENST00000633899	ARHGEF5	Q12774	1597 aa		32.46	■■■□□ 2.79
SF1-221	ENST00000633899	PTPRM	P28827	1452 aa		32.45	■■■□□ 2.79
SF1-221	ENST00000633899	ADGB	Q8N7X0	1667 aa		32.43	■■■□□ 2.78
SF1-221	ENST00000633899	AGL	P35573	1532 aa		32.42	■■■□□ 2.78
SF1-221	ENST00000633899	RTEL1-TNFRSF6B	F6WH68	1400 aa		32.4	■■■□□ 2.78
SF1-221	ENST00000633899	PTPN23	Q9H3S7	1636 aa		32.4	■■■□□ 2.78
SF1-221	ENST00000633899	TSPY4	P0CV99	314 aa		32.38	■■■□□ 2.77
SF1-221	ENST00000633899	TSPY10	P0CW01	314 aa		32.38	■■■□□ 2.77
SF1-221	ENST00000633899	A2M	P01023	1474 aa		32.37	■■■□□ 2.77
SF1-221	ENST00000633899	FGD6	Q6ZV73	1430 aa		32.34	■■■□□ 2.77
SF1-221	ENST00000633899	PLXNC1	O60486	1568 aa		32.33	■■■□□ 2.77
SF1-221	ENST00000633899	PLPPR3	Q6T4P5	718 aa		32.32	■■■□□ 2.76
SF1-221	ENST00000633899	ESF1	Q9H501	851 aa	Known RBP	32.31	■■■□□ 2.76
SF1-221	ENST00000633899	MAST1	Q9Y2H9	1570 aa		32.28	■■■□□ 2.76
SF1-221	ENST00000633899	TCOF1	Q13428	1488 aa	Known RBP	32.26	■■■□□ 2.75
SF1-221	ENST00000633899	CROCC2	H7BZ55	1655 aa		32.25	■■■□□ 2.75
SF1-221	ENST00000633899	DHX29	Q7Z478	1369 aa	Known RBP	32.23	■■■□□ 2.75
SF1-221	ENST00000633899	DNMT1	P26358	1616 aa	Known RBP	32.22	■■■□□ 2.75
SF1-221	ENST00000633899	CNTLN	Q9NXG0	1405 aa		32.18	■■■□□ 2.74
SF1-221	ENST00000633899	SHANK2	Q9UPX8	1470 aa		32.18	■■■□□ 2.74
SF1-221	ENST00000633899	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.18	■■■□□ 2.74
SF1-221	ENST00000633899	ABCC5	O15440	1437 aa		32.17	■■■□□ 2.74
SF1-221	ENST00000633899	DAPK1	P53355	1430 aa		32.17	■■■□□ 2.74
SF1-221	ENST00000633899	FAM50A	Q14320	339 aa	Known RBP	32.17	■■■□□ 2.74
SF1-221	ENST00000633899	GGT6	Q6P531	493 aa		32.17	■■■□□ 2.74
SF1-221	ENST00000633899	C3	P01024	1663 aa		32.15	■■■□□ 2.74
SF1-221	ENST00000633899	MROH2A	A6NES4	1674 aa		32.13	■■■□□ 2.73
SF1-221	ENST00000633899	KIF3B	O15066	747 aa		32.13	■■■□□ 2.73
SF1-221	ENST00000633899	CLTC	Q00610	1675 aa	Known RBP	32.13	■■■□□ 2.73
SF1-221	ENST00000633899	CEBPA	P49715	358 aa	Predicted RBP	32.12	■■■□□ 2.73
SF1-221	ENST00000633899	PPP6R1	Q9UPN7	881 aa		32.08	■■■□□ 2.73
SF1-221	ENST00000633899	DUOX2	Q9NRD8	1548 aa		32.07	■■■□□ 2.72
SF1-221	ENST00000633899	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.07	■■■□□ 2.72
SF1-221	ENST00000633899	KIF15	Q9NS87	1388 aa		32.05	■■■□□ 2.72
SF1-221	ENST00000633899	PREX1	Q8TCU6	1659 aa		32.05	■■■□□ 2.72
SF1-221	ENST00000633899	SETD1B	Q9UPS6	1966 aa	Known RBP	32.03	■■■□□ 2.72
SF1-221	ENST00000633899	CHIC2	Q9UKJ5	165 aa		32.03	■■■□□ 2.72
SF1-221	ENST00000633899	LMTK3	Q96Q04	1460 aa		32.03	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 85 ms