RNA–Protein interactions for RNA: ENST00000633899.1

SF1-221, Transcript of splicing factor 1, humanhuman

TSL 4

Gene SF1, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-221ENST00000633899 NISCHQ9Y2I1 1504 aa50.71■■■■■ 5.71
SF1-221ENST00000633899 CCDC180Q9P1Z9 1646 aa45.21■■■■■ 4.83
SF1-221ENST00000633899 ABCC9O60706 1549 aa44.29■■■■■ 4.68
SF1-221ENST00000633899 RB1CC1Q8TDY2 1594 aa42.59■■■■■ 4.41
SF1-221ENST00000633899 DCAF8L2P0C7V8 631 aa42.49■■■■■ 4.39
SF1-221ENST00000633899 NACADO15069 1562 aa42.48■■■■■ 4.39
SF1-221ENST00000633899 ZCCHC6Q5VYS8 1495 aaKnown RBP42.22■■■■■ 4.35
SF1-221ENST00000633899 MYO15BQ96JP2 1530 aa42.15■■■■■ 4.34
SF1-221ENST00000633899 DCAF1Q9Y4B6 1507 aa41.94■■■■■ 4.3
SF1-221ENST00000633899 UNC13AQ9UPW8 1703 aa41.65■■■■■ 4.26
SF1-221ENST00000633899 PABPN1Q86U42 306 aaKnown RBP eCLIP41.33■■■■■ 4.21
SF1-221ENST00000633899 SCRIBQ14160 1630 aa41.24■■■■■ 4.19
SF1-221ENST00000633899 BICRAQ9NZM4 1560 aa41.21■■■■■ 4.19
SF1-221ENST00000633899 SHROOM4Q9ULL8 1493 aa40.82■■■■■ 4.12
SF1-221ENST00000633899 DNAJC5BQ9UF47 199 aa40.61■■■■■ 4.09
SF1-221ENST00000633899 EIF4G1Q04637 1599 aaKnown RBP40.19■■■■■ 4.02
SF1-221ENST00000633899 CC2D2AQ9P2K1 1620 aa40.07■■■■■ 4.01
SF1-221ENST00000633899 CECR2Q9BXF3 1484 aa39.8■■■■□ 3.96
SF1-221ENST00000633899 SMARCA4P51532 1647 aa39.41■■■■□ 3.9
SF1-221ENST00000633899 BAZ1AQ9NRL2 1556 aaPredicted RBP39.36■■■■□ 3.89
SF1-221ENST00000633899 SMARCA2P51531 1590 aa39.18■■■■□ 3.86
SF1-221ENST00000633899 ATAD2BQ9ULI0 1458 aa39.17■■■■□ 3.86
SF1-221ENST00000633899 NCAPD3P42695 1498 aa39.14■■■■□ 3.86
SF1-221ENST00000633899 MROH2BQ7Z745 1585 aa39.07■■■■□ 3.84
SF1-221ENST00000633899 HMGXB3Q12766 1538 aa38.99■■■■□ 3.83
SF1-221ENST00000633899 PEG3Q9GZU2 1588 aa38.98■■■■□ 3.83
SF1-221ENST00000633899 BAZ1BQ9UIG0 1483 aaKnown RBP38.91■■■■□ 3.82
SF1-221ENST00000633899 WIZO95785 1651 aa38.7■■■■□ 3.79
SF1-221ENST00000633899 RSF1Q96T23 1441 aaPredicted RBP38.56■■■■□ 3.76
SF1-221ENST00000633899 TOP2AP11388 1531 aaKnown RBP38.28■■■■□ 3.72
SF1-221ENST00000633899 NESP48681 1621 aa38.26■■■■□ 3.71
SF1-221ENST00000633899 ERCC6Q03468 1493 aa38.24■■■■□ 3.71
SF1-221ENST00000633899 LAMC3Q9Y6N6 1575 aa38.21■■■■□ 3.71
SF1-221ENST00000633899 CADPSQ9ULU8 1353 aa38.02■■■■□ 3.68
SF1-221ENST00000633899 PDS5BQ9NTI5 1447 aa37.95■■■■□ 3.67
SF1-221ENST00000633899 KIF21AQ7Z4S6 1674 aa37.9■■■■□ 3.66
SF1-221ENST00000633899 CUX2O14529 1486 aa37.82■■■■□ 3.64
SF1-221ENST00000633899 CCDC88BA6NC98 1476 aa37.78■■■■□ 3.64
SF1-221ENST00000633899 CFTRP13569 1480 aa37.77■■■■□ 3.64
SF1-221ENST00000633899 THOC2Q8NI27 1593 aaKnown RBP37.74■■■■□ 3.63
SF1-221ENST00000633899 PRDM2Q13029 1718 aa37.63■■■■□ 3.61
SF1-221ENST00000633899 FANCD2Q9BXW9 1451 aa37.62■■■■□ 3.61
SF1-221ENST00000633899 CEP164Q9UPV0 1460 aa37.61■■■■□ 3.61
SF1-221ENST00000633899 SUPT5HO00267 1087 aaKnown RBP37.6■■■■□ 3.61
SF1-221ENST00000633899 MRC2Q9UBG0 1479 aa37.56■■■■□ 3.6
SF1-221ENST00000633899 WDR62O43379 1518 aa37.42■■■■□ 3.58
SF1-221ENST00000633899 URB2Q14146 1524 aaKnown RBP37.21■■■■□ 3.55
SF1-221ENST00000633899 ABCC8Q09428 1581 aa37.03■■■■□ 3.52
SF1-221ENST00000633899 TOPBP1Q92547 1522 aa37■■■■□ 3.51
SF1-221ENST00000633899 DNMBPQ6XZF7 1577 aa36.98■■■■□ 3.51
SF1-221ENST00000633899 IFT140Q96RY7 1462 aa36.81■■■■□ 3.48
SF1-221ENST00000633899 DNAJC5Q9H3Z4 198 aa36.7■■■■□ 3.47
SF1-221ENST00000633899 CUX1P39880 1505 aa36.67■■■■□ 3.46
SF1-221ENST00000633899 POLA1P09884 1462 aaPredicted RBP36.67■■■■□ 3.46
SF1-221ENST00000633899 ZNF608Q9ULD9 1512 aaPredicted RBP36.6■■■■□ 3.45
SF1-221ENST00000633899 TARBP1Q13395 1621 aaKnown RBP36.59■■■■□ 3.45
SF1-221ENST00000633899 FGD5Q6ZNL6 1462 aa36.59■■■■□ 3.45
SF1-221ENST00000633899 EIF4G3O43432 1585 aaKnown RBP36.53■■■■□ 3.44
SF1-221ENST00000633899 SOGA1O94964 1423 aa36.52■■■■□ 3.44
SF1-221ENST00000633899 RAD54L2Q9Y4B4 1467 aa36.5■■■■□ 3.43
SF1-221ENST00000633899 WRNQ14191 1432 aaPredicted RBP eCLIP36.42■■■■□ 3.42
SF1-221ENST00000633899 AQRO60306 1485 aaKnown RBP eCLIP36.4■■■■□ 3.424e-11■■■■□ 19.9
SF1-221ENST00000633899 BIVM-ERCC5R4GMW8 1640 aa36.37■■■■□ 3.41
SF1-221ENST00000633899 TOP2BQ02880 1626 aa36.36■■■■□ 3.41
SF1-221ENST00000633899 WDR97A6NE52 1622 aa36.35■■■■□ 3.41
SF1-221ENST00000633899 SYNJ1O43426 1573 aa36.33■■■■□ 3.41
SF1-221ENST00000633899 TDRD9Q8NDG6 1382 aaKnown RBP36.31■■■■□ 3.4
SF1-221ENST00000633899 OSCARQ8IYS5 282 aa36.22■■■■□ 3.39
SF1-221ENST00000633899 ABCA10Q8WWZ4 1543 aa36.2■■■■□ 3.39
SF1-221ENST00000633899 CHD1O14646 1710 aa36.13■■■■□ 3.37
SF1-221ENST00000633899 PBRM1Q86U86 1689 aa36.13■■■■□ 3.37
SF1-221ENST00000633899 GRIN2BQ13224 1484 aa36.12■■■■□ 3.37
SF1-221ENST00000633899 GAPVD1Q14C86 1478 aa36.11■■■■□ 3.37
SF1-221ENST00000633899 ABCA5Q8WWZ7 1642 aa36.1■■■■□ 3.37
SF1-221ENST00000633899 SNAPC4Q5SXM2 1469 aa36.1■■■■□ 3.37
SF1-221ENST00000633899 FBLN2P98095 1184 aa36.06■■■■□ 3.36
SF1-221ENST00000633899 MAGI1Q96QZ7 1491 aaPredicted RBP36.05■■■■□ 3.36
SF1-221ENST00000633899 CHMP7Q8WUX9 453 aaPredicted RBP35.92■■■■□ 3.34
SF1-221ENST00000633899 SYNJ2O15056 1496 aa35.9■■■■□ 3.34
SF1-221ENST00000633899 ERICH3Q5RHP9 1530 aa35.8■■■■□ 3.32
SF1-221ENST00000633899 ADAMTS12P58397 1594 aa35.78■■■■□ 3.32
SF1-221ENST00000633899 KIF27Q86VH2 1401 aa35.69■■■■□ 3.3
SF1-221ENST00000633899 RIMBP3CA6NJZ7 1639 aa35.68■■■■□ 3.3
SF1-221ENST00000633899 RIMBP3BA6NNM3 1639 aa35.68■■■■□ 3.3
SF1-221ENST00000633899 RIMBP3Q9UFD9 1639 aa35.68■■■■□ 3.3
SF1-221ENST00000633899 FHAD1B1AJZ9 1412 aa35.68■■■■□ 3.3
SF1-221ENST00000633899 GRIN2AQ12879 1464 aa35.66■■■■□ 3.3
SF1-221ENST00000633899 ARHGEF11O15085 1522 aa35.64■■■■□ 3.3
SF1-221ENST00000633899 CLASP1Q7Z460 1538 aa35.64■■■■□ 3.3
SF1-221ENST00000633899 TRIM41Q8WV44 630 aa35.57■■■■□ 3.28
SF1-221ENST00000633899 CUL7Q14999 1698 aa35.51■■■■□ 3.28
SF1-221ENST00000633899 CEP170Q5SW79 1584 aa35.48■■■■□ 3.27
SF1-221ENST00000633899 IGF1RP08069 1367 aa35.47■■■■□ 3.27
SF1-221ENST00000633899 NUP160Q12769 1436 aa35.47■■■■□ 3.27
SF1-221ENST00000633899 ARAP1Q96P48 1450 aa35.33■■■■□ 3.25
SF1-221ENST00000633899 CYB5RLQ6IPT4 315 aa35.32■■■■□ 3.24
SF1-221ENST00000633899 CARMIL1Q5VZK9 1371 aa35.31■■■■□ 3.24
SF1-221ENST00000633899 RUSC2Q8N2Y8 1516 aa35.27■■■■□ 3.24
SF1-221ENST00000633899 SHROOM2Q13796 1616 aa35.24■■■■□ 3.23
SF1-221ENST00000633899 ERCC6L2Q5T890 1561 aa35.14■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms