RNA: ENST00000633899.1

SF1-221, Transcript of splicing factor 1, human

TSL 4

Gene SF1, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-221	ENST00000633899	RBM22	Q9NW64	420 aa	Known RBP eCLIP	21.03	■□□□□ 0.96	2e-13	■■■■■ 79.6
SF1-221	ENST00000633899	U2AF1	Q01081	240 aa	Known RBP eCLIP	27.91	■■■□□ 2.06	1e-19	■■■■■ 60.2
SF1-221	ENST00000633899	U2AF2	P26368	475 aa	Known RBP eCLIP	23.41	■■□□□ 1.34	4e-8	■■■■■ 44.5
SF1-221	ENST00000633899	EFTUD2	Q15029	972 aa	Known RBP eCLIP	19.96	■□□□□ 0.79	3e-7	■■■■■ 44.5
SF1-221	ENST00000633899	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	24.46	■■□□□ 1.51	7e-7	■■■■■ 40.1
SF1-221	ENST00000633899	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	17.67	■□□□□ 0.42	8e-11	■■■■■ 30.8
SF1-221	ENST00000633899	NONO	Q15233	471 aa	Known RBP eCLIP	23.69	■■□□□ 1.38	1e-6	■■■■■ 28.9
SF1-221	ENST00000633899	SF3B4	Q15427	424 aa	Known RBP eCLIP	18.98	■□□□□ 0.63	2e-8	■■■■■ 28
SF1-221	ENST00000633899	QKI	Q96PU8	341 aa	Known RBP eCLIP	20.9	■□□□□ 0.94	6e-44	■■■■□ 25.8
SF1-221	ENST00000633899	TIA1	P31483	386 aa	Known RBP eCLIP	19.39	■□□□□ 0.69	2e-8	■■■■□ 24.3
SF1-221	ENST00000633899	DDX3X	O00571	662 aa	Known RBP eCLIP	21.49	■■□□□ 1.03	6e-44	■■■■□ 22.7
SF1-221	ENST00000633899	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	22.28	■■□□□ 1.16	6e-6	■■■■□ 21.2
SF1-221	ENST00000633899	KHSRP	Q92945	711 aa	Known RBP eCLIP	22.45	■■□□□ 1.18	2e-11	■■■■□ 20.5
SF1-221	ENST00000633899	SF3B1	O75533	1304 aa	Known RBP eCLIP	22.77	■■□□□ 1.24	3e-8	■■■■□ 20.2
SF1-221	ENST00000633899	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	33.43	■■■□□ 2.94	1e-8	■■■■□ 19.9
SF1-221	ENST00000633899	AQR	O60306	1485 aa	Known RBP eCLIP	36.4	■■■■□ 3.42	4e-11	■■■■□ 19.9
SF1-221	ENST00000633899	XRCC6	P12956	609 aa	Known RBP eCLIP	23.26	■■□□□ 1.31	1e-7	■■■□□ 17.8
SF1-221	ENST00000633899	NKRF	O15226	690 aa	Known RBP eCLIP	24.03	■■□□□ 1.44	2e-6	■■■□□ 17.1
SF1-221	ENST00000633899	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	31.8	■■■□□ 2.68	1e-12	■■■□□ 16.6
SF1-221	ENST00000633899	PCBP1	Q15365	356 aa	Known RBP eCLIP	23.13	■■□□□ 1.29	1e-8	■■■□□ 15.5
SF1-221	ENST00000633899	ZRANB2	O95218	330 aa	Known RBP eCLIP	21.03	■□□□□ 0.96	1e-6	■■■□□ 14.8
SF1-221	ENST00000633899	FXR2	P51116	673 aa	Known RBP eCLIP	23.29	■■□□□ 1.32	4e-18	■■□□□ 13.9
SF1-221	ENST00000633899	AATF	Q9NY61	560 aa	Known RBP eCLIP	25.38	■■□□□ 1.65	3e-6	■■□□□ 13.7
SF1-221	ENST00000633899	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	23.37	■■□□□ 1.33	5e-14	■■□□□ 13
SF1-221	ENST00000633899	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	24.03	■■□□□ 1.44	3e-7	■■□□□ 13
SF1-221	ENST00000633899	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	21.55	■■□□□ 1.04	2e-9	■■□□□ 12.9
SF1-221	ENST00000633899	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	19.75	■□□□□ 0.75	2e-6	■■□□□ 12.7
SF1-221	ENST00000633899	TAF15	Q92804	592 aa	Known RBP eCLIP	16.94	■□□□□ 0.3	1e-8	■■□□□ 12.7
SF1-221	ENST00000633899	RBM15	Q96T37	977 aa	Known RBP eCLIP	20.9	■□□□□ 0.94	4e-9	■■□□□ 11.9
SF1-221	ENST00000633899	YBX3	P16989	372 aa	Known RBP eCLIP	27.07	■■□□□ 1.92	3e-8	■■□□□ 11.9
SF1-221	ENST00000633899	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	21.51	■■□□□ 1.03	6e-6	■■□□□ 11.9
SF1-221	ENST00000633899	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	19.54	■□□□□ 0.72	2e-9	■■□□□ 11.8
SF1-221	ENST00000633899	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	19.23	■□□□□ 0.67	9e-8	■■□□□ 11.8
SF1-221	ENST00000633899	ZNF622	Q969S3	477 aa	Known RBP eCLIP	26.9	■■□□□ 1.9	1e-14	■□□□□ 11.2
SF1-221	ENST00000633899	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	20.69	■□□□□ 0.9	4e-11	■□□□□ 10.9
SF1-221	ENST00000633899	METAP2	P50579	478 aa	Known RBP eCLIP	24.1	■■□□□ 1.45	2e-8	■□□□□ 10.5
SF1-221	ENST00000633899	SRSF1	Q07955	248 aa	Known RBP eCLIP	19.25	■□□□□ 0.67	4e-12	■□□□□ 10.5
SF1-221	ENST00000633899	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	24.36	■■□□□ 1.49	2e-12	■□□□□ 10.2
SF1-221	ENST00000633899	FUS	P35637	526 aa	Known RBP eCLIP	13.9	□□□□□ -0.18	5e-13	■□□□□ 10.2
SF1-221	ENST00000633899	TRA2A	Q13595	282 aa	Known RBP eCLIP	20.44	■□□□□ 0.86	4e-10	■□□□□ 9.6
SF1-221	ENST00000633899	FMR1	Q06787	632 aa	Known RBP eCLIP	25.82	■■□□□ 1.72	1e-11	■□□□□ 9.6
SF1-221	ENST00000633899	SF3A3	Q12874	501 aa	Known RBP eCLIP	18.76	■□□□□ 0.59	1e-11	■□□□□ 9.6
SF1-221	ENST00000633899	NCBP2	P52298	156 aa	Known RBP eCLIP	19.26	■□□□□ 0.67	2e-7	■□□□□ 9.3
SF1-221	ENST00000633899	TIAL1	Q01085	375 aa	Known RBP eCLIP	20.07	■□□□□ 0.8	1e-7	■□□□□ 9.3
SF1-221	ENST00000633899	SRSF7	Q16629	238 aa	Known RBP eCLIP	16.56	■□□□□ 0.24	6e-7	■□□□□ 8.9
SF1-221	ENST00000633899	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	19.42	■□□□□ 0.7	1e-5	■□□□□ 8.8
SF1-221	ENST00000633899	HNRNPC	P07910	306 aa	Known RBP eCLIP	15.57	■□□□□ 0.08	1e-11	■□□□□ 8.2

Retrieved 47 of 47 RNA–protein pairs in 9.9 ms