RNA–Protein interactions for RNA: ENST00000633899.1

SF1-221, Transcript of splicing factor 1, humanhuman

TSL 4

Gene SF1, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-221ENST00000633899 RBM22Q9NW64 420 aaKnown RBP eCLIP21.03■□□□□ 0.962e-13■■■■■ 79.6
SF1-221ENST00000633899 U2AF1Q01081 240 aaKnown RBP eCLIP27.91■■■□□ 2.061e-19■■■■■ 60.2
SF1-221ENST00000633899 U2AF2P26368 475 aaKnown RBP eCLIP23.41■■□□□ 1.344e-8■■■■■ 44.5
SF1-221ENST00000633899 EFTUD2Q15029 972 aaKnown RBP eCLIP19.96■□□□□ 0.793e-7■■■■■ 44.5
SF1-221ENST00000633899 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.46■■□□□ 1.517e-7■■■■■ 40.1
SF1-221ENST00000633899 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.67■□□□□ 0.428e-11■■■■■ 30.8
SF1-221ENST00000633899 NONOQ15233 471 aaKnown RBP eCLIP23.69■■□□□ 1.381e-6■■■■■ 28.9
SF1-221ENST00000633899 SF3B4Q15427 424 aaKnown RBP eCLIP18.98■□□□□ 0.632e-8■■■■■ 28
SF1-221ENST00000633899 QKIQ96PU8 341 aaKnown RBP eCLIP20.9■□□□□ 0.946e-44■■■■□ 25.8
SF1-221ENST00000633899 TIA1P31483 386 aaKnown RBP eCLIP19.39■□□□□ 0.692e-8■■■■□ 24.3
SF1-221ENST00000633899 DDX3XO00571 662 aaKnown RBP eCLIP21.49■■□□□ 1.036e-44■■■■□ 22.7
SF1-221ENST00000633899 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.28■■□□□ 1.166e-6■■■■□ 21.2
SF1-221ENST00000633899 KHSRPQ92945 711 aaKnown RBP eCLIP22.45■■□□□ 1.182e-11■■■■□ 20.5
SF1-221ENST00000633899 SF3B1O75533 1304 aaKnown RBP eCLIP22.77■■□□□ 1.243e-8■■■■□ 20.2
SF1-221ENST00000633899 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.43■■■□□ 2.941e-8■■■■□ 19.9
SF1-221ENST00000633899 AQRO60306 1485 aaKnown RBP eCLIP36.4■■■■□ 3.424e-11■■■■□ 19.9
SF1-221ENST00000633899 XRCC6P12956 609 aaKnown RBP eCLIP23.26■■□□□ 1.311e-7■■■□□ 17.8
SF1-221ENST00000633899 NKRFO15226 690 aaKnown RBP eCLIP24.03■■□□□ 1.442e-6■■■□□ 17.1
SF1-221ENST00000633899 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.8■■■□□ 2.681e-12■■■□□ 16.6
SF1-221ENST00000633899 PCBP1Q15365 356 aaKnown RBP eCLIP23.13■■□□□ 1.291e-8■■■□□ 15.5
SF1-221ENST00000633899 ZRANB2O95218 330 aaKnown RBP eCLIP21.03■□□□□ 0.961e-6■■■□□ 14.8
SF1-221ENST00000633899 FXR2P51116 673 aaKnown RBP eCLIP23.29■■□□□ 1.324e-18■■□□□ 13.9
SF1-221ENST00000633899 AATFQ9NY61 560 aaKnown RBP eCLIP25.38■■□□□ 1.653e-6■■□□□ 13.7
SF1-221ENST00000633899 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.37■■□□□ 1.335e-14■■□□□ 13
SF1-221ENST00000633899 GPKOWQ92917 476 aaPredicted RBP eCLIP24.03■■□□□ 1.443e-7■■□□□ 13
SF1-221ENST00000633899 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.55■■□□□ 1.042e-9■■□□□ 12.9
SF1-221ENST00000633899 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.75■□□□□ 0.752e-6■■□□□ 12.7
SF1-221ENST00000633899 TAF15Q92804 592 aaKnown RBP eCLIP16.94■□□□□ 0.31e-8■■□□□ 12.7
SF1-221ENST00000633899 RBM15Q96T37 977 aaKnown RBP eCLIP20.9■□□□□ 0.944e-9■■□□□ 11.9
SF1-221ENST00000633899 YBX3P16989 372 aaKnown RBP eCLIP27.07■■□□□ 1.923e-8■■□□□ 11.9
SF1-221ENST00000633899 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.51■■□□□ 1.036e-6■■□□□ 11.9
SF1-221ENST00000633899 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.54■□□□□ 0.722e-9■■□□□ 11.8
SF1-221ENST00000633899 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.23■□□□□ 0.679e-8■■□□□ 11.8
SF1-221ENST00000633899 ZNF622Q969S3 477 aaKnown RBP eCLIP26.9■■□□□ 1.91e-14■□□□□ 11.2
SF1-221ENST00000633899 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.69■□□□□ 0.94e-11■□□□□ 10.9
SF1-221ENST00000633899 METAP2P50579 478 aaKnown RBP eCLIP24.1■■□□□ 1.452e-8■□□□□ 10.5
SF1-221ENST00000633899 SRSF1Q07955 248 aaKnown RBP eCLIP19.25■□□□□ 0.674e-12■□□□□ 10.5
SF1-221ENST00000633899 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.36■■□□□ 1.492e-12■□□□□ 10.2
SF1-221ENST00000633899 FUSP35637 526 aaKnown RBP eCLIP13.9□□□□□ -0.185e-13■□□□□ 10.2
SF1-221ENST00000633899 TRA2AQ13595 282 aaKnown RBP eCLIP20.44■□□□□ 0.864e-10■□□□□ 9.6
SF1-221ENST00000633899 FMR1Q06787 632 aaKnown RBP eCLIP25.82■■□□□ 1.721e-11■□□□□ 9.6
SF1-221ENST00000633899 SF3A3Q12874 501 aaKnown RBP eCLIP18.76■□□□□ 0.591e-11■□□□□ 9.6
SF1-221ENST00000633899 NCBP2P52298 156 aaKnown RBP eCLIP19.26■□□□□ 0.672e-7■□□□□ 9.3
SF1-221ENST00000633899 TIAL1Q01085 375 aaKnown RBP eCLIP20.07■□□□□ 0.81e-7■□□□□ 9.3
SF1-221ENST00000633899 SRSF7Q16629 238 aaKnown RBP eCLIP16.56■□□□□ 0.246e-7■□□□□ 8.9
SF1-221ENST00000633899 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.42■□□□□ 0.71e-5■□□□□ 8.8
SF1-221ENST00000633899 HNRNPCP07910 306 aaKnown RBP eCLIP15.57■□□□□ 0.081e-11■□□□□ 8.2
Retrieved 47 of 47 RNA–protein pairs in 9.8 ms