RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MPHOSPH9Q99550 1183 aa15.19■□□□□ 0.02
CUX1-221ENST00000622516 KCNH8Q96L42 1107 aa15.19■□□□□ 0.02
CUX1-221ENST00000622516 TIMELESSQ9UNS1 1208 aa15.18■□□□□ 0.02
CUX1-221ENST00000622516 DAPK1P53355 1430 aa15.18■□□□□ 0.02
CUX1-221ENST00000622516 ABCC5O15440 1437 aa15.18■□□□□ 0.02
CUX1-221ENST00000622516 TROQ12816 1431 aaPredicted RBP15.18■□□□□ 0.02
CUX1-221ENST00000622516 PLEKHD1A6NEE1 506 aa15.18■□□□□ 0.02
CUX1-221ENST00000622516 KIF14Q15058 1648 aa15.16■□□□□ 0.02
CUX1-221ENST00000622516 DENND4BO75064 1496 aaPredicted RBP15.16■□□□□ 0.02
CUX1-221ENST00000622516 GPATCH8Q9UKJ3 1502 aaKnown RBP15.14■□□□□ 0.01
CUX1-221ENST00000622516 ATP10BO94823 1461 aa15.13■□□□□ 0.01
CUX1-221ENST00000622516 PTPRGP23470 1445 aa15.12■□□□□ 0.01
CUX1-221ENST00000622516 SLC4A1APQ9BWU0 796 aaKnown RBP15.12■□□□□ 0.01
CUX1-221ENST00000622516 GCC2Q8IWJ2 1684 aa15.11■□□□□ 0.01
CUX1-221ENST00000622516 CAMSAP2Q08AD1 1489 aa15.11■□□□□ 0.01
CUX1-221ENST00000622516 DNMT1P26358 1616 aaKnown RBP15.09■□□□□ 0.01
CUX1-221ENST00000622516 L3MBTL2Q969R5 705 aa15.09■□□□□ 0.01
CUX1-221ENST00000622516 AKNAQ7Z591 1439 aa15.08■□□□□ 0
CUX1-221ENST00000622516 HNRNPMP52272 730 aaKnown RBP eCLIP15.08■□□□□ 09e-7■■■□□ 19.2
CUX1-221ENST00000622516 CHD1O14646 1710 aa15.08■□□□□ 0
CUX1-221ENST00000622516 ABCA8O94911 1581 aa15.07■□□□□ 0
CUX1-221ENST00000622516 ROCK1Q13464 1354 aa15.07■□□□□ 0
CUX1-221ENST00000622516 NCOA1Q15788 1441 aa15.05■□□□□ -0
CUX1-221ENST00000622516 KDM5BQ9UGL1 1544 aa15.04■□□□□ -0
CUX1-221ENST00000622516 ERCC6L2Q5T890 1561 aa15.04■□□□□ -0
CUX1-221ENST00000622516 ANKRD30BQ9BXX2 1392 aa15.01□□□□□ -0.01
CUX1-221ENST00000622516 PRKCSHP14314 528 aaPredicted RBP15.01□□□□□ -0.01
CUX1-221ENST00000622516 ITSN2Q9NZM3 1697 aa15.01□□□□□ -0.01
CUX1-221ENST00000622516 HSPA5P11021 654 aaKnown RBP15.01□□□□□ -0.01
CUX1-221ENST00000622516 TSPY4P0CV99 314 aa15□□□□□ -0.01
CUX1-221ENST00000622516 TSPY10P0CW01 314 aa15□□□□□ -0.01
CUX1-221ENST00000622516 ABCC10Q5T3U5 1492 aa15□□□□□ -0.01
CUX1-221ENST00000622516 CDC42BPAQ5VT25 1732 aa15□□□□□ -0.01
CUX1-221ENST00000622516 PKD2Q13563 968 aa15□□□□□ -0.01
CUX1-221ENST00000622516 NBPF8Q3BBV2 869 aa15□□□□□ -0.01
CUX1-221ENST00000622516 ADCY10Q96PN6 1610 aa14.99□□□□□ -0.01
CUX1-221ENST00000622516 ZNF326Q5BKZ1 582 aaKnown RBP14.99□□□□□ -0.01
CUX1-221ENST00000622516 ANKRD30AQ9BXX3 1397 aa14.99□□□□□ -0.01
CUX1-221ENST00000622516 ANKRD50Q9ULJ7 1429 aa14.97□□□□□ -0.01
CUX1-221ENST00000622516 ANP32CO43423 234 aa14.97□□□□□ -0.01
CUX1-221ENST00000622516 PZPP20742 1482 aa14.96□□□□□ -0.01
CUX1-221ENST00000622516 C9orf84Q5VXU9 1444 aa14.96□□□□□ -0.01
CUX1-221ENST00000622516 NUP155O75694 1391 aa14.95□□□□□ -0.02
CUX1-221ENST00000622516 EIF4G2P78344 907 aaKnown RBP eCLIP14.95□□□□□ -0.021e-6■■■■■ 32.2
CUX1-221ENST00000622516 WASHC2AQ641Q2 1341 aa14.95□□□□□ -0.02
CUX1-221ENST00000622516 RPRD2Q5VT52 1461 aaKnown RBP14.94□□□□□ -0.02
CUX1-221ENST00000622516 C11orf95C9JLR9 678 aaPredicted RBP14.94□□□□□ -0.02
CUX1-221ENST00000622516 ADGBQ8N7X0 1667 aa14.91□□□□□ -0.02
CUX1-221ENST00000622516 ADGRL2O95490 1459 aa14.91□□□□□ -0.02
CUX1-221ENST00000622516 KIF15Q9NS87 1388 aa14.91□□□□□ -0.02
CUX1-221ENST00000622516 CROCC2H7BZ55 1655 aa14.91□□□□□ -0.02
CUX1-221ENST00000622516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.9□□□□□ -0.021e-6■■□□□ 13.7
CUX1-221ENST00000622516 MBD5Q9P267 1494 aa14.89□□□□□ -0.03
CUX1-221ENST00000622516 SHROOM2Q13796 1616 aa14.89□□□□□ -0.03
CUX1-221ENST00000622516 KIAA1107Q9UPP5 1409 aa14.89□□□□□ -0.03
CUX1-221ENST00000622516 TEX14Q8IWB6 1497 aa14.89□□□□□ -0.03
CUX1-221ENST00000622516 CDC42BPBQ9Y5S2 1711 aa14.89□□□□□ -0.03
CUX1-221ENST00000622516 CNGB1Q14028 1251 aaPredicted RBP14.88□□□□□ -0.03
CUX1-221ENST00000622516 KDM2AQ9Y2K7 1162 aa14.88□□□□□ -0.03
CUX1-221ENST00000622516 SAMD9LQ8IVG5 1584 aa14.88□□□□□ -0.03
CUX1-221ENST00000622516 ARHGAP5Q13017 1502 aa14.87□□□□□ -0.03
CUX1-221ENST00000622516 TTC37Q6PGP7 1564 aa14.87□□□□□ -0.03
CUX1-221ENST00000622516 POLR3GLQ9BT43 218 aa14.86□□□□□ -0.03
CUX1-221ENST00000622516 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.86□□□□□ -0.037e-8■■■■■ 32
CUX1-221ENST00000622516 ABCC2Q92887 1545 aa14.85□□□□□ -0.03
CUX1-221ENST00000622516 SYCP2Q9BX26 1530 aa14.85□□□□□ -0.03
CUX1-221ENST00000622516 CCDC141Q6ZP82 1450 aa14.83□□□□□ -0.03
CUX1-221ENST00000622516 SHANK2Q9UPX8 1470 aa14.83□□□□□ -0.04
CUX1-221ENST00000622516 CCER2I3L3R5 266 aa14.82□□□□□ -0.04
CUX1-221ENST00000622516 PREX2Q70Z35 1606 aa14.82□□□□□ -0.04
CUX1-221ENST00000622516 RGL3Q3MIN7 710 aa14.81□□□□□ -0.04
CUX1-221ENST00000622516 DCAF11Q8TEB1 546 aa14.81□□□□□ -0.04
CUX1-221ENST00000622516 CLASP1Q7Z460 1538 aa14.8□□□□□ -0.04
CUX1-221ENST00000622516 RSPH4AQ5TD94 716 aa14.79□□□□□ -0.04
CUX1-221ENST00000622516 CCDC7Q96M83 1385 aa14.79□□□□□ -0.04
CUX1-221ENST00000622516 ARHGEF5Q12774 1597 aa14.79□□□□□ -0.04
CUX1-221ENST00000622516 CCDC184Q52MB2 194 aa14.79□□□□□ -0.04
CUX1-221ENST00000622516 KIF7Q2M1P5 1343 aa14.79□□□□□ -0.04
CUX1-221ENST00000622516 ARHGEF12Q9NZN5 1544 aa14.78□□□□□ -0.04
CUX1-221ENST00000622516 AFAP1Q8N556 730 aa14.78□□□□□ -0.04
CUX1-221ENST00000622516 SUPT16HQ9Y5B9 1047 aaKnown RBP14.78□□□□□ -0.04
CUX1-221ENST00000622516 ZCCHC11Q5TAX3 1644 aaKnown RBP14.78□□□□□ -0.04
CUX1-221ENST00000622516 EFCAB2Q5VUJ9 269 aa14.77□□□□□ -0.04
CUX1-221ENST00000622516 SPATA31E1Q6ZUB1 1445 aa14.76□□□□□ -0.05
CUX1-221ENST00000622516 PLEKHH2Q8IVE3 1493 aa14.76□□□□□ -0.05
CUX1-221ENST00000622516 USP47Q96K76 1375 aa14.75□□□□□ -0.05
CUX1-221ENST00000622516 CARD11Q9BXL7 1154 aa14.75□□□□□ -0.05
CUX1-221ENST00000622516 MYO5CQ9NQX4 1742 aa14.75□□□□□ -0.05
CUX1-221ENST00000622516 PLCH2O75038 1416 aa14.74□□□□□ -0.05
CUX1-221ENST00000622516 BCANQ96GW7 911 aa14.74□□□□□ -0.05
CUX1-221ENST00000622516 MYT1LQ9UL68 1186 aa14.74□□□□□ -0.05
CUX1-221ENST00000622516 FAM135AQ9P2D6 1515 aa14.74□□□□□ -0.05
CUX1-221ENST00000622516 CNTLNQ9NXG0 1405 aa14.73□□□□□ -0.05
CUX1-221ENST00000622516 TRAPPC8Q9Y2L5 1435 aa14.73□□□□□ -0.05
CUX1-221ENST00000622516 HNRNPUQ00839 825 aaKnown RBP eCLIP14.73□□□□□ -0.051e-6■■■■□ 21.8
CUX1-221ENST00000622516 PRKRIP1Q9H875 184 aaPredicted RBP14.71□□□□□ -0.05
CUX1-221ENST00000622516 FAM9BQ8IZU0 186 aa14.71□□□□□ -0.05
CUX1-221ENST00000622516 ST20-MTHFSA0A0A6YYL1 179 aa14.7□□□□□ -0.06
CUX1-221ENST00000622516 ERICH6Q7L0X2 663 aa14.7□□□□□ -0.06
CUX1-221ENST00000622516 KDM5DQ9BY66 1539 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms