RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 CCDC9Q9Y3X0 531 aaKnown RBP12.61□□□□□ -0.39
COL4A6-210ENST00000621266 A0A0U1RQG5 324 aaPredicted RBP12.6□□□□□ -0.39
COL4A6-210ENST00000621266 CARMIL1Q5VZK9 1371 aa12.6□□□□□ -0.39
COL4A6-210ENST00000621266 KCNJ4P48050 445 aa12.59□□□□□ -0.39
COL4A6-210ENST00000621266 CUX2O14529 1486 aa12.59□□□□□ -0.39
COL4A6-210ENST00000621266 PDS5BQ9NTI5 1447 aa12.59□□□□□ -0.39
COL4A6-210ENST00000621266 SMARCA2P51531 1590 aa12.59□□□□□ -0.39
COL4A6-210ENST00000621266 SAFB2Q14151 953 aaKnown RBP eCLIP12.59□□□□□ -0.39
COL4A6-210ENST00000621266 FHAD1B1AJZ9 1412 aa12.58□□□□□ -0.39
COL4A6-210ENST00000621266 GOLGA6L1Q8N7Z2 621 aa12.58□□□□□ -0.4
COL4A6-210ENST00000621266 CALRP27797 417 aaKnown RBP12.58□□□□□ -0.4
COL4A6-210ENST00000621266 GBP4Q96PP9 640 aa12.57□□□□□ -0.4
COL4A6-210ENST00000621266 CDCA8Q53HL2 280 aa12.56□□□□□ -0.4
COL4A6-210ENST00000621266 CLSTN1O94985 981 aa12.55□□□□□ -0.4
COL4A6-210ENST00000621266 CCNB3Q8WWL7 1395 aa12.55□□□□□ -0.4
COL4A6-210ENST00000621266 SETQ01105 290 aaPredicted RBP12.54□□□□□ -0.4
COL4A6-210ENST00000621266 ZNF771Q7L3S4 317 aaPredicted RBP12.54□□□□□ -0.4
COL4A6-210ENST00000621266 STK26Q9P289 416 aa12.54□□□□□ -0.4
COL4A6-210ENST00000621266 PAK3O75914 559 aaPredicted RBP12.54□□□□□ -0.4
COL4A6-210ENST00000621266 OS9Q13438 667 aaPredicted RBP12.54□□□□□ -0.4
COL4A6-210ENST00000621266 PTMSP20962 102 aa12.54□□□□□ -0.4
COL4A6-210ENST00000621266 MROH2BQ7Z745 1585 aa12.53□□□□□ -0.4
COL4A6-210ENST00000621266 CFAP53Q96M91 514 aa12.53□□□□□ -0.4
COL4A6-210ENST00000621266 TDRD9Q8NDG6 1382 aaKnown RBP12.52□□□□□ -0.4
COL4A6-210ENST00000621266 SOGA1O94964 1423 aa12.52□□□□□ -0.41
COL4A6-210ENST00000621266 IPO9Q96P70 1041 aaKnown RBP12.52□□□□□ -0.41
COL4A6-210ENST00000621266 CARD11Q9BXL7 1154 aa12.52□□□□□ -0.41
COL4A6-210ENST00000621266 CCDC88BA6NC98 1476 aa12.52□□□□□ -0.41
COL4A6-210ENST00000621266 KNSTRNQ9Y448 316 aa12.51□□□□□ -0.41
COL4A6-210ENST00000621266 KANK1Q14678 1352 aa12.51□□□□□ -0.41
COL4A6-210ENST00000621266 MCCP23508 829 aa12.5□□□□□ -0.41
COL4A6-210ENST00000621266 NUTM2DQ5VT03 806 aaPredicted RBP12.5□□□□□ -0.41
COL4A6-210ENST00000621266 PDE4CQ08493 712 aa12.49□□□□□ -0.41
COL4A6-210ENST00000621266 PATL2C9JE40 543 aaKnown RBP12.49□□□□□ -0.41
COL4A6-210ENST00000621266 CC2D1BQ5T0F9 858 aaKnown RBP12.48□□□□□ -0.41
COL4A6-210ENST00000621266 HDGFP51858 240 aaKnown RBP12.48□□□□□ -0.41
COL4A6-210ENST00000621266 MAPK8IP3Q9UPT6 1336 aa12.48□□□□□ -0.41
COL4A6-210ENST00000621266 FOXD4L1Q9NU39 408 aa12.47□□□□□ -0.41
COL4A6-210ENST00000621266 SYAP1Q96A49 352 aaPredicted RBP12.47□□□□□ -0.41
COL4A6-210ENST00000621266 PKNOX2Q96KN3 472 aa12.47□□□□□ -0.41
COL4A6-210ENST00000621266 GNL2Q13823 731 aaKnown RBP12.46□□□□□ -0.41
COL4A6-210ENST00000621266 OSCARQ8IYS5 282 aa12.46□□□□□ -0.42
COL4A6-210ENST00000621266 PHF23Q9BUL5 403 aaPredicted RBP12.46□□□□□ -0.42
COL4A6-210ENST00000621266 CARMIL2Q6F5E8 1435 aa12.45□□□□□ -0.42
COL4A6-210ENST00000621266 MEX3CQ5U5Q3 659 aaKnown RBP12.45□□□□□ -0.42
COL4A6-210ENST00000621266 SRPK2P78362 688 aaKnown RBP12.44□□□□□ -0.42
COL4A6-210ENST00000621266 SIN3AQ96ST3 1273 aa12.44□□□□□ -0.42
COL4A6-210ENST00000621266 APBB1O00213 710 aa12.44□□□□□ -0.42
COL4A6-210ENST00000621266 FAM13BQ9NYF5 915 aa12.44□□□□□ -0.42
COL4A6-210ENST00000621266 CSB-PGBD3P0DP91 1061 aa12.44□□□□□ -0.42
COL4A6-210ENST00000621266 MS4A1P11836 297 aa12.44□□□□□ -0.42
COL4A6-210ENST00000621266 CHMP4BQ9H444 224 aaKnown RBP12.44□□□□□ -0.42
COL4A6-210ENST00000621266 CALD1Q05682 793 aaKnown RBP12.43□□□□□ -0.42
COL4A6-210ENST00000621266 MFAP1P55081 439 aaKnown RBP12.42□□□□□ -0.42
COL4A6-210ENST00000621266 PODXL2Q9NZ53 605 aa12.42□□□□□ -0.42
COL4A6-210ENST00000621266 APPP05067 770 aa12.42□□□□□ -0.42
COL4A6-210ENST00000621266 TCERG1O14776 1098 aaKnown RBP12.42□□□□□ -0.42
COL4A6-210ENST00000621266 TPM4P67936 248 aa12.42□□□□□ -0.42
COL4A6-210ENST00000621266 VPS8Q8N3P4 1428 aa12.42□□□□□ -0.42
COL4A6-210ENST00000621266 GSE1Q14687 1217 aa12.42□□□□□ -0.42
COL4A6-210ENST00000621266 ABCC8Q09428 1581 aa12.41□□□□□ -0.42
COL4A6-210ENST00000621266 HSP90B1P14625 803 aaKnown RBP12.4□□□□□ -0.42
COL4A6-210ENST00000621266 WIZO95785 1651 aa12.4□□□□□ -0.42
COL4A6-210ENST00000621266 FOXD4L5Q5VV16 416 aaPredicted RBP12.39□□□□□ -0.43
COL4A6-210ENST00000621266 FOXD4L4Q8WXT5 416 aaPredicted RBP12.39□□□□□ -0.43
COL4A6-210ENST00000621266 U2SURPO15042 1029 aaKnown RBP12.39□□□□□ -0.43
COL4A6-210ENST00000621266 CCAR2Q8N163 923 aaKnown RBP12.39□□□□□ -0.43
COL4A6-210ENST00000621266 ZNF330Q9Y3S2 320 aaPredicted RBP12.39□□□□□ -0.43
COL4A6-210ENST00000621266 ARHGAP35Q9NRY4 1499 aa12.39□□□□□ -0.43
COL4A6-210ENST00000621266 CREBRFQ8IUR6 639 aa12.39□□□□□ -0.43
COL4A6-210ENST00000621266 TOP2AP11388 1531 aaKnown RBP12.38□□□□□ -0.43
COL4A6-210ENST00000621266 NUTM2FA1L443 756 aa12.38□□□□□ -0.43
COL4A6-210ENST00000621266 SLC4A3P48751 1232 aa12.38□□□□□ -0.43
COL4A6-210ENST00000621266 NUDCQ9Y266 331 aa12.38□□□□□ -0.43
COL4A6-210ENST00000621266 ANO8Q9HCE9 1232 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-210ENST00000621266 NOL8Q76FK4 1167 aaKnown RBP12.37□□□□□ -0.43
COL4A6-210ENST00000621266 CADPSQ9ULU8 1353 aa12.37□□□□□ -0.43
COL4A6-210ENST00000621266 DCAF11Q8TEB1 546 aa12.37□□□□□ -0.43
COL4A6-210ENST00000621266 PRM3Q9NNZ6 103 aa12.37□□□□□ -0.43
COL4A6-210ENST00000621266 FMN1Q68DA7 1419 aa12.37□□□□□ -0.43
COL4A6-210ENST00000621266 HNRNPMP52272 730 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL4A6-210ENST00000621266 EID1Q9Y6B2 187 aa12.37□□□□□ -0.43
COL4A6-210ENST00000621266 FAM69CQ0P6D2 419 aa12.37□□□□□ -0.43
COL4A6-210ENST00000621266 TAF7LQ5H9L4 462 aa12.37□□□□□ -0.43
COL4A6-210ENST00000621266 ZNF592Q92610 1267 aa12.36□□□□□ -0.43
COL4A6-210ENST00000621266 KIAA1211Q6ZU35 1233 aa12.36□□□□□ -0.43
COL4A6-210ENST00000621266 GOLGA2Q08379 1002 aa12.36□□□□□ -0.43
COL4A6-210ENST00000621266 HTATSF1O43719 755 aaKnown RBP12.35□□□□□ -0.43
COL4A6-210ENST00000621266 USP35Q9P2H5 1018 aa12.35□□□□□ -0.43
COL4A6-210ENST00000621266 PRKCSHP14314 528 aaPredicted RBP12.35□□□□□ -0.43
COL4A6-210ENST00000621266 TMF1P82094 1093 aa12.35□□□□□ -0.43
COL4A6-210ENST00000621266 CFAP44Q96MT7 982 aa12.35□□□□□ -0.43
COL4A6-210ENST00000621266 SETD5Q9C0A6 1442 aa12.34□□□□□ -0.43
COL4A6-210ENST00000621266 ISY1Q9ULR0 285 aaKnown RBP12.34□□□□□ -0.43
COL4A6-210ENST00000621266 KIF3BO15066 747 aa12.33□□□□□ -0.43
COL4A6-210ENST00000621266 TPM3P06753 285 aa12.33□□□□□ -0.44
COL4A6-210ENST00000621266 RCAN3Q9UKA8 241 aa12.33□□□□□ -0.44
COL4A6-210ENST00000621266 PHF14O94880 888 aa12.32□□□□□ -0.44
COL4A6-210ENST00000621266 KANK4Q5T7N3 995 aaPredicted RBP12.32□□□□□ -0.44
COL4A6-210ENST00000621266 DDX11L8A8MPP1 907 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms