RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CCDC18Q5T9S5 1454 aa19.43■□□□□ 0.7
UPF3B-204ENST00000619445 ZFYVE16Q7Z3T8 1539 aa19.43■□□□□ 0.7
UPF3B-204ENST00000619445 SCAPERQ9BY12 1400 aa19.42■□□□□ 0.7
UPF3B-204ENST00000619445 CASKIN1Q8WXD9 1431 aa19.41■□□□□ 0.7
UPF3B-204ENST00000619445 MADDQ8WXG6 1647 aa19.38■□□□□ 0.69
UPF3B-204ENST00000619445 ZNF518AQ6AHZ1 1483 aa19.37■□□□□ 0.69
UPF3B-204ENST00000619445 LRRIQ1Q96JM4 1722 aa19.36■□□□□ 0.69
UPF3B-204ENST00000619445 ARHGAP5Q13017 1502 aa19.36■□□□□ 0.69
UPF3B-204ENST00000619445 FYCO1Q9BQS8 1478 aa19.36■□□□□ 0.69
UPF3B-204ENST00000619445 PCF11O94913 1555 aaKnown RBP19.35■□□□□ 0.69
UPF3B-204ENST00000619445 YEATS2Q9ULM3 1422 aa19.34■□□□□ 0.69
UPF3B-204ENST00000619445 ATP10AO60312 1499 aa19.33■□□□□ 0.68
UPF3B-204ENST00000619445 RIMS1Q86UR5 1692 aaKnown RBP19.32■□□□□ 0.68
UPF3B-204ENST00000619445 C9orf84Q5VXU9 1444 aa19.31■□□□□ 0.68
UPF3B-204ENST00000619445 KDM5CP41229 1560 aa19.3■□□□□ 0.68
UPF3B-204ENST00000619445 PREX2Q70Z35 1606 aa19.29■□□□□ 0.68
UPF3B-204ENST00000619445 CDC42BPBQ9Y5S2 1711 aa19.29■□□□□ 0.68
UPF3B-204ENST00000619445 FER1L4A9Z1Z3 1794 aa19.27■□□□□ 0.68
UPF3B-204ENST00000619445 MLH3Q9UHC1 1453 aa19.25■□□□□ 0.67
UPF3B-204ENST00000619445 REREQ9P2R6 1566 aa19.24■□□□□ 0.67
UPF3B-204ENST00000619445 SIGLEC1Q9BZZ2 1709 aa19.24■□□□□ 0.67
UPF3B-204ENST00000619445 ABCC1P33527 1531 aa19.23■□□□□ 0.67
UPF3B-204ENST00000619445 ARHGEF12Q9NZN5 1544 aa19.23■□□□□ 0.67
UPF3B-204ENST00000619445 ILDR1Q86SU0 546 aaPredicted RBP19.23■□□□□ 0.67
UPF3B-204ENST00000619445 AFAP1Q8N556 730 aa19.23■□□□□ 0.67
UPF3B-204ENST00000619445 MYT1LQ9UL68 1186 aa19.23■□□□□ 0.67
UPF3B-204ENST00000619445 LMTK3Q96Q04 1460 aa19.23■□□□□ 0.67
UPF3B-204ENST00000619445 CDC42BPAQ5VT25 1732 aa19.22■□□□□ 0.67
UPF3B-204ENST00000619445 MLECQ14165 292 aa19.21■□□□□ 0.67
UPF3B-204ENST00000619445 ITSN2Q9NZM3 1697 aa19.21■□□□□ 0.67
UPF3B-204ENST00000619445 DIP2CQ9Y2E4 1556 aa19.19■□□□□ 0.66
UPF3B-204ENST00000619445 PLEKHH2Q8IVE3 1493 aa19.16■□□□□ 0.66
UPF3B-204ENST00000619445 AGLP35573 1532 aa19.16■□□□□ 0.66
UPF3B-204ENST00000619445 MTUS2Q5JR59 1369 aa19.16■□□□□ 0.66
UPF3B-204ENST00000619445 TRAPPC8Q9Y2L5 1435 aa19.16■□□□□ 0.66
UPF3B-204ENST00000619445 SETD1BQ9UPS6 1966 aaKnown RBP19.16■□□□□ 0.66
UPF3B-204ENST00000619445 ABCA6Q8N139 1617 aa19.15■□□□□ 0.66
UPF3B-204ENST00000619445 GPATCH8Q9UKJ3 1502 aaKnown RBP19.15■□□□□ 0.66
UPF3B-204ENST00000619445 KIAA1107Q9UPP5 1409 aa19.13■□□□□ 0.65
UPF3B-204ENST00000619445 CCNB3Q8WWL7 1395 aa19.13■□□□□ 0.65
UPF3B-204ENST00000619445 PREX1Q8TCU6 1659 aa19.12■□□□□ 0.65
UPF3B-204ENST00000619445 PLPPR3Q6T4P5 718 aa19.12■□□□□ 0.65
UPF3B-204ENST00000619445 ESF1Q9H501 851 aaKnown RBP19.12■□□□□ 0.65
UPF3B-204ENST00000619445 CFDP1Q9UEE9 299 aaPredicted RBP19.12■□□□□ 0.65
UPF3B-204ENST00000619445 KIDINS220Q9ULH0 1771 aa19.12■□□□□ 0.65
UPF3B-204ENST00000619445 SAMD9LQ8IVG5 1584 aa19.11■□□□□ 0.65
UPF3B-204ENST00000619445 ZNF777Q9ULD5 760 aaPredicted RBP19.11■□□□□ 0.65
UPF3B-204ENST00000619445 CEP162Q5TB80 1403 aa19.1■□□□□ 0.65
UPF3B-204ENST00000619445 EHBP1L1Q8N3D4 1523 aa19.09■□□□□ 0.65
UPF3B-204ENST00000619445 CNTLNQ9NXG0 1405 aa19.09■□□□□ 0.65
UPF3B-204ENST00000619445 SYCP2Q9BX26 1530 aa19.09■□□□□ 0.65
UPF3B-204ENST00000619445 SPAG9O60271 1321 aaKnown RBP19.09■□□□□ 0.65
UPF3B-204ENST00000619445 FBXO41Q8TF61 875 aa19.07■□□□□ 0.64
UPF3B-204ENST00000619445 HSPA2P54652 639 aa19.06■□□□□ 0.64
UPF3B-204ENST00000619445 UHRF1BP1Q6BDS2 1440 aa19.05■□□□□ 0.64
UPF3B-204ENST00000619445 ATP7AQ04656 1500 aa19.04■□□□□ 0.64
UPF3B-204ENST00000619445 HNRNPMP52272 730 aaKnown RBP eCLIP19.03■□□□□ 0.64
UPF3B-204ENST00000619445 DMRT2Q9Y5R5 561 aa19.03■□□□□ 0.64
UPF3B-204ENST00000619445 INO80Q9ULG1 1556 aaPredicted RBP19.02■□□□□ 0.64
UPF3B-204ENST00000619445 CEBPAP49715 358 aaPredicted RBP19.02■□□□□ 0.64
UPF3B-204ENST00000619445 C3P01024 1663 aa19.02■□□□□ 0.63
UPF3B-204ENST00000619445 TIAM1Q13009 1591 aa19.01■□□□□ 0.63
UPF3B-204ENST00000619445 MROH2AA6NES4 1674 aa19■□□□□ 0.63
UPF3B-204ENST00000619445 SUPT6HQ7KZ85 1726 aaKnown RBP18.98■□□□□ 0.63
UPF3B-204ENST00000619445 A2MP01023 1474 aa18.98■□□□□ 0.63
UPF3B-204ENST00000619445 ADGBQ8N7X0 1667 aa18.98■□□□□ 0.63
UPF3B-204ENST00000619445 PLXNC1O60486 1568 aa18.98■□□□□ 0.63
UPF3B-204ENST00000619445 RSPH4AQ5TD94 716 aa18.97■□□□□ 0.63
UPF3B-204ENST00000619445 PPP6R1Q9UPN7 881 aa18.97■□□□□ 0.63
UPF3B-204ENST00000619445 RTEL1-TNFRSF6BF6WH68 1400 aa18.97■□□□□ 0.63
UPF3B-204ENST00000619445 NPATQ14207 1427 aa18.97■□□□□ 0.63
UPF3B-204ENST00000619445 MBD5Q9P267 1494 aa18.94■□□□□ 0.62
UPF3B-204ENST00000619445 VPS8Q8N3P4 1428 aa18.93■□□□□ 0.62
UPF3B-204ENST00000619445 NCOA2Q15596 1464 aa18.93■□□□□ 0.62
UPF3B-204ENST00000619445 ZMYM3Q14202 1370 aa18.92■□□□□ 0.62
UPF3B-204ENST00000619445 STRCQ7RTU9 1775 aa18.91■□□□□ 0.62
UPF3B-204ENST00000619445 CCDC141Q6ZP82 1450 aa18.9■□□□□ 0.62
UPF3B-204ENST00000619445 ZNF644Q9H582 1327 aaPredicted RBP18.9■□□□□ 0.62
UPF3B-204ENST00000619445 PTPRTO14522 1441 aa18.89■□□□□ 0.61
UPF3B-204ENST00000619445 CERKQ8TCT0 537 aa18.89■□□□□ 0.61
UPF3B-204ENST00000619445 MAP3K1Q13233 1512 aa18.89■□□□□ 0.61
UPF3B-204ENST00000619445 CLTCQ00610 1675 aaKnown RBP18.88■□□□□ 0.61
UPF3B-204ENST00000619445 FAM135AQ9P2D6 1515 aa18.88■□□□□ 0.61
UPF3B-204ENST00000619445 CAMSAP2Q08AD1 1489 aa18.88■□□□□ 0.61
UPF3B-204ENST00000619445 DHX29Q7Z478 1369 aaKnown RBP18.87■□□□□ 0.61
UPF3B-204ENST00000619445 GGT6Q6P531 493 aa18.87■□□□□ 0.61
UPF3B-204ENST00000619445 LRRC9Q6ZRR7 1453 aa18.86■□□□□ 0.61
UPF3B-204ENST00000619445 ARHGEF5Q12774 1597 aa18.86■□□□□ 0.61
UPF3B-204ENST00000619445 TSPY4P0CV99 314 aa18.84■□□□□ 0.61
UPF3B-204ENST00000619445 TSPY10P0CW01 314 aa18.84■□□□□ 0.61
UPF3B-204ENST00000619445 NCOA1Q15788 1441 aa18.83■□□□□ 0.61
UPF3B-204ENST00000619445 ZNF142P52746 1687 aaPredicted RBP18.82■□□□□ 0.6
UPF3B-204ENST00000619445 PTPRKQ15262 1439 aa18.82■□□□□ 0.6
UPF3B-204ENST00000619445 LOC105371045A0A1W2PR82 267 aa18.81■□□□□ 0.6
UPF3B-204ENST00000619445 CAMSAP1Q5T5Y3 1602 aa18.79■□□□□ 0.6
UPF3B-204ENST00000619445 MYO3AQ8NEV4 1616 aa18.79■□□□□ 0.6
UPF3B-204ENST00000619445 MIA2Q96PC5 1412 aa18.79■□□□□ 0.6
UPF3B-204ENST00000619445 PLA2R1Q13018 1463 aa18.79■□□□□ 0.6
UPF3B-204ENST00000619445 KIF3BO15066 747 aa18.79■□□□□ 0.6
UPF3B-204ENST00000619445 KDM5DQ9BY66 1539 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms