RNA–Protein interactions for RNA: ENST00000615606.4

CLTCL1-208, Transcript of clathrin heavy chain like 1, humanhuman

TSL 1 (best)

Gene CLTCL1, Length 4,994 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-208ENST00000615606 FOXD1Q16676 465 aa12.53□□□□□ -0.4
CLTCL1-208ENST00000615606 SRPK2P78362 688 aaKnown RBP12.52□□□□□ -0.4
CLTCL1-208ENST00000615606 FAM69CQ0P6D2 419 aa12.52□□□□□ -0.4
CLTCL1-208ENST00000615606 PRG4Q92954 1404 aaPredicted RBP12.52□□□□□ -0.41
CLTCL1-208ENST00000615606 EID1Q9Y6B2 187 aa12.52□□□□□ -0.41
CLTCL1-208ENST00000615606 MIER1Q8N108 512 aa12.51□□□□□ -0.41
CLTCL1-208ENST00000615606 SNAPC4Q5SXM2 1469 aa12.5□□□□□ -0.41
CLTCL1-208ENST00000615606 KIF21BO75037 1637 aa12.5□□□□□ -0.41
CLTCL1-208ENST00000615606 STK26Q9P289 416 aa12.49□□□□□ -0.41
CLTCL1-208ENST00000615606 MAPK8IP3Q9UPT6 1336 aa12.48□□□□□ -0.41
CLTCL1-208ENST00000615606 SAFB2Q14151 953 aaKnown RBP eCLIP12.48□□□□□ -0.411e-12■■■□□ 15
CLTCL1-208ENST00000615606 FKBP8Q14318 412 aa12.48□□□□□ -0.41
CLTCL1-208ENST00000615606 SYNJ2O15056 1496 aa12.48□□□□□ -0.41
CLTCL1-208ENST00000615606 MYOM3Q5VTT5 1437 aa12.48□□□□□ -0.41
CLTCL1-208ENST00000615606 PRDM2Q13029 1718 aa12.48□□□□□ -0.41
CLTCL1-208ENST00000615606 CASKIN1Q8WXD9 1431 aa12.47□□□□□ -0.41
CLTCL1-208ENST00000615606 PEG3Q9GZU2 1588 aa12.47□□□□□ -0.41
CLTCL1-208ENST00000615606 ROCK2O75116 1388 aaKnown RBP12.47□□□□□ -0.41
CLTCL1-208ENST00000615606 EIF3AQ14152 1382 aaKnown RBP12.46□□□□□ -0.41
CLTCL1-208ENST00000615606 HDGFL2Q7Z4V5 671 aaPredicted RBP12.46□□□□□ -0.42
CLTCL1-208ENST00000615606 PNNQ9H307 717 aaKnown RBP12.45□□□□□ -0.42
CLTCL1-208ENST00000615606 EFCAB5A4FU69 1503 aa12.44□□□□□ -0.42
CLTCL1-208ENST00000615606 UNC13AQ9UPW8 1703 aa12.44□□□□□ -0.42
CLTCL1-208ENST00000615606 ABCA10Q8WWZ4 1543 aa12.44□□□□□ -0.42
CLTCL1-208ENST00000615606 MYH16Q9H6N6 1097 aa12.44□□□□□ -0.42
CLTCL1-208ENST00000615606 HSPA5P11021 654 aaKnown RBP12.44□□□□□ -0.42
CLTCL1-208ENST00000615606 CC2D1BQ5T0F9 858 aaKnown RBP12.44□□□□□ -0.42
CLTCL1-208ENST00000615606 PRXQ9BXM0 1461 aa12.44□□□□□ -0.42
CLTCL1-208ENST00000615606 TNNT2P45379 298 aaPredicted RBP12.43□□□□□ -0.42
CLTCL1-208ENST00000615606 UACAQ9BZF9 1416 aa12.42□□□□□ -0.42
CLTCL1-208ENST00000615606 CCDC144AA2RUR9 1427 aa12.42□□□□□ -0.42
CLTCL1-208ENST00000615606 CCDC136Q96JN2 1154 aa12.42□□□□□ -0.42
CLTCL1-208ENST00000615606 MORC1Q86VD1 984 aa12.41□□□□□ -0.42
CLTCL1-208ENST00000615606 FYCO1Q9BQS8 1478 aa12.41□□□□□ -0.42
CLTCL1-208ENST00000615606 UPF2Q9HAU5 1272 aaKnown RBP12.41□□□□□ -0.42
CLTCL1-208ENST00000615606 FGD6Q6ZV73 1430 aa12.41□□□□□ -0.42
CLTCL1-208ENST00000615606 U2SURPO15042 1029 aaKnown RBP12.4□□□□□ -0.42
CLTCL1-208ENST00000615606 L3MBTL2Q969R5 705 aa12.4□□□□□ -0.42
CLTCL1-208ENST00000615606 LRRC9Q6ZRR7 1453 aa12.39□□□□□ -0.43
CLTCL1-208ENST00000615606 ANP32AP39687 249 aaKnown RBP12.39□□□□□ -0.43
CLTCL1-208ENST00000615606 KIAA0586Q9BVV6 1533 aa12.39□□□□□ -0.43
CLTCL1-208ENST00000615606 VGFO15240 615 aaPredicted RBP12.38□□□□□ -0.43
CLTCL1-208ENST00000615606 NEUROD2Q15784 382 aa12.38□□□□□ -0.43
CLTCL1-208ENST00000615606 KIF15Q9NS87 1388 aa12.37□□□□□ -0.43
CLTCL1-208ENST00000615606 ARHGAP5Q13017 1502 aa12.37□□□□□ -0.43
CLTCL1-208ENST00000615606 NCOA2Q15596 1464 aa12.37□□□□□ -0.43
CLTCL1-208ENST00000615606 SOX12O15370 315 aa12.36□□□□□ -0.43
CLTCL1-208ENST00000615606 NUTM2DQ5VT03 806 aaPredicted RBP12.36□□□□□ -0.43
CLTCL1-208ENST00000615606 MAGI1Q96QZ7 1491 aaPredicted RBP12.36□□□□□ -0.43
CLTCL1-208ENST00000615606 ZNF644Q9H582 1327 aaPredicted RBP12.35□□□□□ -0.43
CLTCL1-208ENST00000615606 ARAP1Q96P48 1450 aa12.35□□□□□ -0.43
CLTCL1-208ENST00000615606 KTN1Q86UP2 1357 aaKnown RBP12.35□□□□□ -0.43
CLTCL1-208ENST00000615606 TERF2IPQ9NYB0 399 aa12.35□□□□□ -0.43
CLTCL1-208ENST00000615606 LAS1LQ9Y4W2 734 aaKnown RBP12.35□□□□□ -0.43
CLTCL1-208ENST00000615606 PAK3O75914 559 aaPredicted RBP12.35□□□□□ -0.43
CLTCL1-208ENST00000615606 ARXQ96QS3 562 aa12.33□□□□□ -0.44
CLTCL1-208ENST00000615606 PHLDB1Q86UU1 1377 aa12.33□□□□□ -0.44
CLTCL1-208ENST00000615606 URB2Q14146 1524 aaKnown RBP12.33□□□□□ -0.44
CLTCL1-208ENST00000615606 PLEKHH2Q8IVE3 1493 aa12.32□□□□□ -0.44
CLTCL1-208ENST00000615606 TROQ12816 1431 aaPredicted RBP12.32□□□□□ -0.44
CLTCL1-208ENST00000615606 CUL7Q14999 1698 aa12.32□□□□□ -0.44
CLTCL1-208ENST00000615606 HECW1Q76N89 1606 aa12.32□□□□□ -0.44
CLTCL1-208ENST00000615606 HSP90AA1P07900 732 aaKnown RBP12.31□□□□□ -0.44
CLTCL1-208ENST00000615606 EHBP1L1Q8N3D4 1523 aa12.31□□□□□ -0.44
CLTCL1-208ENST00000615606 ANKRD50Q9ULJ7 1429 aa12.31□□□□□ -0.44
CLTCL1-208ENST00000615606 FTSJ3Q8IY81 847 aaKnown RBP12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 NGDNQ8NEJ9 315 aaKnown RBP12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 IQGAP2Q13576 1575 aa12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 TRAK1Q9UPV9 953 aa12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 DHX57Q6P158 1386 aaKnown RBP12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 AFAP1Q8N556 730 aa12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 RALBP1Q15311 655 aa12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 GRIN2AQ12879 1464 aa12.3□□□□□ -0.44
CLTCL1-208ENST00000615606 CCER2I3L3R5 266 aa12.29□□□□□ -0.44
CLTCL1-208ENST00000615606 STAC3Q96MF2 364 aa12.29□□□□□ -0.44
CLTCL1-208ENST00000615606 CHMP4BQ9H444 224 aaKnown RBP12.28□□□□□ -0.44
CLTCL1-208ENST00000615606 MS4A1P11836 297 aa12.28□□□□□ -0.44
CLTCL1-208ENST00000615606 SENP3-EIF4A1A0A087X0R7 540 aa12.28□□□□□ -0.44
CLTCL1-208ENST00000615606 CSB-PGBD3P0DP91 1061 aa12.28□□□□□ -0.44
CLTCL1-208ENST00000615606 RTF1Q92541 710 aaKnown RBP12.27□□□□□ -0.44
CLTCL1-208ENST00000615606 MIA2Q96PC5 1412 aa12.27□□□□□ -0.45
CLTCL1-208ENST00000615606 AEBP2Q6ZN18 517 aaPredicted RBP12.27□□□□□ -0.45
CLTCL1-208ENST00000615606 IRX6P78412 446 aaPredicted RBP12.26□□□□□ -0.45
CLTCL1-208ENST00000615606 EVC2Q86UK5 1308 aa12.24□□□□□ -0.45
CLTCL1-208ENST00000615606 U2AF1L5P0DN76 240 aaPredicted RBP12.23□□□□□ -0.45
CLTCL1-208ENST00000615606 U2AF1Q01081 240 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLTCL1-208ENST00000615606 CALD1Q05682 793 aaKnown RBP12.23□□□□□ -0.45
CLTCL1-208ENST00000615606 NPHP1O15259 732 aa12.23□□□□□ -0.45
CLTCL1-208ENST00000615606 ZNF608Q9ULD9 1512 aaPredicted RBP12.23□□□□□ -0.45
CLTCL1-208ENST00000615606 ST20-MTHFSA0A0A6YYL1 179 aa12.22□□□□□ -0.45
CLTCL1-208ENST00000615606 C9orf84Q5VXU9 1444 aa12.22□□□□□ -0.45
CLTCL1-208ENST00000615606 FRAT1Q92837 279 aaPredicted RBP12.21□□□□□ -0.45
CLTCL1-208ENST00000615606 BIVM-ERCC5R4GMW8 1640 aa12.21□□□□□ -0.45
CLTCL1-208ENST00000615606 NUTM2FA1L443 756 aa12.21□□□□□ -0.45
CLTCL1-208ENST00000615606 EPRSP07814 1512 aaKnown RBP12.21□□□□□ -0.45
CLTCL1-208ENST00000615606 SCAPERQ9BY12 1400 aa12.21□□□□□ -0.46
CLTCL1-208ENST00000615606 TIAM1Q13009 1591 aa12.2□□□□□ -0.46
CLTCL1-208ENST00000615606 RRBP1Q9P2E9 1410 aaKnown RBP12.19□□□□□ -0.46
CLTCL1-208ENST00000615606 AMPHP49418 695 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms