RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 GAPVD1Q14C86 1478 aa16.71■□□□□ 0.27
MSH6-213ENST00000614496 MAP3K1Q13233 1512 aa16.7■□□□□ 0.26
MSH6-213ENST00000614496 CNTLNQ9NXG0 1405 aa16.7■□□□□ 0.26
MSH6-213ENST00000614496 FANCIQ9NVI1 1328 aa16.7■□□□□ 0.26
MSH6-213ENST00000614496 PTPRKQ15262 1439 aa16.68■□□□□ 0.26
MSH6-213ENST00000614496 PDS5BQ9NTI5 1447 aa16.68■□□□□ 0.26
MSH6-213ENST00000614496 TOPBP1Q92547 1522 aa16.67■□□□□ 0.26
MSH6-213ENST00000614496 CANXP27824 592 aaKnown RBP16.67■□□□□ 0.26
MSH6-213ENST00000614496 NUP155O75694 1391 aa16.66■□□□□ 0.26
MSH6-213ENST00000614496 ST20-MTHFSA0A0A6YYL1 179 aa16.65■□□□□ 0.26
MSH6-213ENST00000614496 WDR43Q15061 677 aaKnown RBP eCLIP16.65■□□□□ 0.262e-9■□□□□ 9.3
MSH6-213ENST00000614496 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.65■□□□□ 0.264e-9■■■□□ 16.4
MSH6-213ENST00000614496 EFCAB5A4FU69 1503 aa16.64■□□□□ 0.26
MSH6-213ENST00000614496 USP47Q96K76 1375 aa16.63■□□□□ 0.25
MSH6-213ENST00000614496 AQRO60306 1485 aaKnown RBP eCLIP16.61■□□□□ 0.258e-7■■■■□ 22.6
MSH6-213ENST00000614496 RCAN3Q9UKA8 241 aa16.61■□□□□ 0.25
MSH6-213ENST00000614496 RTN4Q9NQC3 1192 aaKnown RBP16.59■□□□□ 0.25
MSH6-213ENST00000614496 HNRNPMP52272 730 aaKnown RBP eCLIP16.59■□□□□ 0.25
MSH6-213ENST00000614496 NEFMP07197 916 aa16.59■□□□□ 0.25
MSH6-213ENST00000614496 AKNAQ7Z591 1439 aa16.58■□□□□ 0.25
MSH6-213ENST00000614496 ABCA10Q8WWZ4 1543 aa16.58■□□□□ 0.24
MSH6-213ENST00000614496 EXOC6Q8TAG9 804 aa16.57■□□□□ 0.24
MSH6-213ENST00000614496 IPO9Q96P70 1041 aaKnown RBP16.57■□□□□ 0.24
MSH6-213ENST00000614496 DNAJC5BQ9UF47 199 aa16.57■□□□□ 0.24
MSH6-213ENST00000614496 ANKRD30AQ9BXX3 1397 aa16.57■□□□□ 0.24
MSH6-213ENST00000614496 CHGAP10645 457 aaKnown RBP16.56■□□□□ 0.24
MSH6-213ENST00000614496 ROCK2O75116 1388 aaKnown RBP16.56■□□□□ 0.24
MSH6-213ENST00000614496 PLIN1O60240 522 aa16.56■□□□□ 0.24
MSH6-213ENST00000614496 PTPN23Q9H3S7 1636 aa16.55■□□□□ 0.24
MSH6-213ENST00000614496 CC2D2AQ9P2K1 1620 aa16.55■□□□□ 0.24
MSH6-213ENST00000614496 DNMBPQ6XZF7 1577 aa16.55■□□□□ 0.24
MSH6-213ENST00000614496 PAK3O75914 559 aaPredicted RBP16.54■□□□□ 0.24
MSH6-213ENST00000614496 RGS3P49796 1198 aa16.54■□□□□ 0.24
MSH6-213ENST00000614496 KNSTRNQ9Y448 316 aa16.54■□□□□ 0.24
MSH6-213ENST00000614496 CDK13Q14004 1512 aaKnown RBP16.53■□□□□ 0.24
MSH6-213ENST00000614496 EHBP1L1Q8N3D4 1523 aa16.53■□□□□ 0.24
MSH6-213ENST00000614496 RALBP1Q15311 655 aa16.52■□□□□ 0.24
MSH6-213ENST00000614496 KTN1Q86UP2 1357 aaKnown RBP16.52■□□□□ 0.24
MSH6-213ENST00000614496 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.51■□□□□ 0.23
MSH6-213ENST00000614496 SUPT6HQ7KZ85 1726 aaKnown RBP16.51■□□□□ 0.23
MSH6-213ENST00000614496 SENP3Q9H4L4 574 aaPredicted RBP16.5■□□□□ 0.23
MSH6-213ENST00000614496 NLRP13Q86W25 1043 aa16.49■□□□□ 0.23
MSH6-213ENST00000614496 MYBBP1AQ9BQG0 1328 aaKnown RBP16.49■□□□□ 0.23
MSH6-213ENST00000614496 KIF15Q9NS87 1388 aa16.49■□□□□ 0.23
MSH6-213ENST00000614496 RRP1P56182 461 aaKnown RBP16.49■□□□□ 0.23
MSH6-213ENST00000614496 TMF1P82094 1093 aa16.48■□□□□ 0.23
MSH6-213ENST00000614496 NEUROD2Q15784 382 aa16.47■□□□□ 0.23
MSH6-213ENST00000614496 JPH4Q96JJ6 628 aa16.47■□□□□ 0.23
MSH6-213ENST00000614496 PRDM2Q13029 1718 aa16.47■□□□□ 0.23
MSH6-213ENST00000614496 TCERG1O14776 1098 aaKnown RBP16.46■□□□□ 0.23
MSH6-213ENST00000614496 ARXQ96QS3 562 aa16.46■□□□□ 0.23
MSH6-213ENST00000614496 ANKRD30BQ9BXX2 1392 aa16.46■□□□□ 0.23
MSH6-213ENST00000614496 EPRSP07814 1512 aaKnown RBP16.46■□□□□ 0.22
MSH6-213ENST00000614496 PNISRQ8TF01 805 aaKnown RBP16.45■□□□□ 0.22
MSH6-213ENST00000614496 CFAP43Q8NDM7 1665 aa16.45■□□□□ 0.22
MSH6-213ENST00000614496 DDRGK1Q96HY6 314 aa16.45■□□□□ 0.22
MSH6-213ENST00000614496 PDE4AP27815 886 aa16.45■□□□□ 0.22
MSH6-213ENST00000614496 CDCA7LQ96GN5 454 aa16.45■□□□□ 0.22
MSH6-213ENST00000614496 DAPK1P53355 1430 aa16.44■□□□□ 0.22
MSH6-213ENST00000614496 NCOA1Q15788 1441 aa16.44■□□□□ 0.22
MSH6-213ENST00000614496 PANK3Q9H999 370 aa16.44■□□□□ 0.22
MSH6-213ENST00000614496 MIA2Q96PC5 1412 aa16.44■□□□□ 0.22
MSH6-213ENST00000614496 PPM1GO15355 546 aaPredicted RBP16.43■□□□□ 0.22
MSH6-213ENST00000614496 EIF5BO60841 1220 aaKnown RBP16.43■□□□□ 0.22
MSH6-213ENST00000614496 TNNT2P45379 298 aaPredicted RBP16.43■□□□□ 0.22
MSH6-213ENST00000614496 PRG4Q92954 1404 aaPredicted RBP16.43■□□□□ 0.22
MSH6-213ENST00000614496 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
MSH6-213ENST00000614496 CUL7Q14999 1698 aa16.41■□□□□ 0.22
MSH6-213ENST00000614496 SLC4A3P48751 1232 aa16.41■□□□□ 0.22
MSH6-213ENST00000614496 CARMIL2Q6F5E8 1435 aa16.41■□□□□ 0.22
MSH6-213ENST00000614496 URB2Q14146 1524 aaKnown RBP16.41■□□□□ 0.22
MSH6-213ENST00000614496 SNAPC4Q5SXM2 1469 aa16.41■□□□□ 0.22
MSH6-213ENST00000614496 CRBNQ96SW2 442 aa16.41■□□□□ 0.22
MSH6-213ENST00000614496 ANKRD50Q9ULJ7 1429 aa16.4■□□□□ 0.22
MSH6-213ENST00000614496 GRIN2BQ13224 1484 aa16.4■□□□□ 0.22
MSH6-213ENST00000614496 CCDC146Q8IYE0 955 aa16.38■□□□□ 0.21
MSH6-213ENST00000614496 FRAT1Q92837 279 aaPredicted RBP16.38■□□□□ 0.21
MSH6-213ENST00000614496 NBPF1Q3BBV0 1214 aa16.38■□□□□ 0.21
MSH6-213ENST00000614496 ABCC5O15440 1437 aa16.38■□□□□ 0.21
MSH6-213ENST00000614496 SMG6Q86US8 1419 aaKnown RBP16.38■□□□□ 0.21
MSH6-213ENST00000614496 HECW1Q76N89 1606 aa16.37■□□□□ 0.21
MSH6-213ENST00000614496 PDE3BQ13370 1112 aa16.37■□□□□ 0.21
MSH6-213ENST00000614496 KIAA1107Q9UPP5 1409 aa16.36■□□□□ 0.21
MSH6-213ENST00000614496 RPRD2Q5VT52 1461 aaKnown RBP16.35■□□□□ 0.21
MSH6-213ENST00000614496 SKAP1Q86WV1 359 aa16.35■□□□□ 0.21
MSH6-213ENST00000614496 CCDC144AA2RUR9 1427 aa16.34■□□□□ 0.21
MSH6-213ENST00000614496 CDCA8Q53HL2 280 aa16.34■□□□□ 0.21
MSH6-213ENST00000614496 UPF2Q9HAU5 1272 aaKnown RBP16.34■□□□□ 0.21
MSH6-213ENST00000614496 UGGT2Q9NYU1 1516 aa16.34■□□□□ 0.21
MSH6-213ENST00000614496 THOC2Q8NI27 1593 aaKnown RBP16.32■□□□□ 0.2
MSH6-213ENST00000614496 ARID4BQ4LE39 1312 aaPredicted RBP16.32■□□□□ 0.2
MSH6-213ENST00000614496 ROCK1Q13464 1354 aa16.31■□□□□ 0.2
MSH6-213ENST00000614496 BRD4O60885 1362 aaPredicted RBP16.31■□□□□ 0.2
MSH6-213ENST00000614496 GOLGA2Q08379 1002 aa16.3■□□□□ 0.2
MSH6-213ENST00000614496 CTTNBP2Q8WZ74 1663 aa16.3■□□□□ 0.2
MSH6-213ENST00000614496 IQGAP2Q13576 1575 aa16.3■□□□□ 0.2
MSH6-213ENST00000614496 TROQ12816 1431 aaPredicted RBP16.28■□□□□ 0.2
MSH6-213ENST00000614496 ADAMTS8Q9UP79 889 aa16.27■□□□□ 0.2
MSH6-213ENST00000614496 MAGI3Q5TCQ9 1506 aa16.24■□□□□ 0.19
MSH6-213ENST00000614496 PLB1Q6P1J6 1458 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms