RNA–Protein interactions for RNA: ENST00000610359.4

MUC1-221, Transcript of mucin 1, cell surface associated, humanhuman

TSL 1 (best) BASIC

Gene MUC1, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MUC1-221ENST00000610359 CFAP74Q9C0B2 1584 aa12.11□□□□□ -0.47
MUC1-221ENST00000610359 P3H3Q8IVL6 736 aa12.11□□□□□ -0.47
MUC1-221ENST00000610359 PTPRTO14522 1441 aa12.11□□□□□ -0.47
MUC1-221ENST00000610359 IQSEC2Q5JU85 1478 aa12.1□□□□□ -0.47
MUC1-221ENST00000610359 MAGI2Q86UL8 1455 aa12.08□□□□□ -0.47
MUC1-221ENST00000610359 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.07□□□□□ -0.48
MUC1-221ENST00000610359 UHRF1BP1Q6BDS2 1440 aa12.07□□□□□ -0.48
MUC1-221ENST00000610359 NUP153P49790 1475 aaKnown RBP12.07□□□□□ -0.48
MUC1-221ENST00000610359 SAMD9Q5K651 1589 aa12.06□□□□□ -0.48
MUC1-221ENST00000610359 C3P01024 1663 aa12.06□□□□□ -0.48
MUC1-221ENST00000610359 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.05□□□□□ -0.48
MUC1-221ENST00000610359 HNRNPUL2Q1KMD3 747 aaKnown RBP12.05□□□□□ -0.48
MUC1-221ENST00000610359 ATP10AO60312 1499 aa12.04□□□□□ -0.48
MUC1-221ENST00000610359 PRXQ9BXM0 1461 aa12.03□□□□□ -0.48
MUC1-221ENST00000610359 C9orf84Q5VXU9 1444 aa12.03□□□□□ -0.48
MUC1-221ENST00000610359 MED1Q15648 1581 aaPredicted RBP12.01□□□□□ -0.49
MUC1-221ENST00000610359 FAM9AQ8IZU1 332 aaPredicted RBP12.01□□□□□ -0.49
MUC1-221ENST00000610359 NCOA1Q15788 1441 aa12.01□□□□□ -0.49
MUC1-221ENST00000610359 SCAPERQ9BY12 1400 aa12.01□□□□□ -0.49
MUC1-221ENST00000610359 PLEKHD1A6NEE1 506 aa11.99□□□□□ -0.49
MUC1-221ENST00000610359 UBAP1LF5GYI3 381 aa11.98□□□□□ -0.49
MUC1-221ENST00000610359 CAMSAP1Q5T5Y3 1602 aa11.97□□□□□ -0.49
MUC1-221ENST00000610359 ZNF335Q9H4Z2 1342 aaPredicted RBP11.96□□□□□ -0.49
MUC1-221ENST00000610359 PLCH2O75038 1416 aa11.95□□□□□ -0.5
MUC1-221ENST00000610359 DIP2CQ9Y2E4 1556 aa11.95□□□□□ -0.5
MUC1-221ENST00000610359 MYO5CQ9NQX4 1742 aa11.94□□□□□ -0.5
MUC1-221ENST00000610359 TRAPPC8Q9Y2L5 1435 aa11.94□□□□□ -0.5
MUC1-221ENST00000610359 KDM5CP41229 1560 aa11.93□□□□□ -0.5
MUC1-221ENST00000610359 HSPA1LP34931 641 aa11.93□□□□□ -0.5
MUC1-221ENST00000610359 ABCA6Q8N139 1617 aa11.93□□□□□ -0.5
MUC1-221ENST00000610359 REREQ9P2R6 1566 aa11.92□□□□□ -0.5
MUC1-221ENST00000610359 NCKAP5LQ9HCH0 1330 aa11.92□□□□□ -0.5
MUC1-221ENST00000610359 SUPT6HQ7KZ85 1726 aaKnown RBP11.91□□□□□ -0.5
MUC1-221ENST00000610359 CDK13Q14004 1512 aaKnown RBP11.91□□□□□ -0.5
MUC1-221ENST00000610359 ZNF518AQ6AHZ1 1483 aa11.89□□□□□ -0.51
MUC1-221ENST00000610359 AFAP1Q8N556 730 aa11.89□□□□□ -0.51
MUC1-221ENST00000610359 AGLP35573 1532 aa11.89□□□□□ -0.51
MUC1-221ENST00000610359 MROH2AA6NES4 1674 aa11.87□□□□□ -0.51
MUC1-221ENST00000610359 ZNF142P52746 1687 aaPredicted RBP11.87□□□□□ -0.51
MUC1-221ENST00000610359 KIF14Q15058 1648 aa11.86□□□□□ -0.51
MUC1-221ENST00000610359 RANGAP1P46060 587 aaPredicted RBP11.86□□□□□ -0.51
MUC1-221ENST00000610359 EFCAB2Q5VUJ9 269 aa11.86□□□□□ -0.51
MUC1-221ENST00000610359 TCOF1Q13428 1488 aaKnown RBP11.85□□□□□ -0.51
MUC1-221ENST00000610359 PIP4K2BP78356 416 aa11.85□□□□□ -0.51
MUC1-221ENST00000610359 CDC42BPBQ9Y5S2 1711 aa11.85□□□□□ -0.51
MUC1-221ENST00000610359 MYO3AQ8NEV4 1616 aa11.85□□□□□ -0.51
MUC1-221ENST00000610359 NPATQ14207 1427 aa11.85□□□□□ -0.51
MUC1-221ENST00000610359 KIDINS220Q9ULH0 1771 aa11.84□□□□□ -0.51
MUC1-221ENST00000610359 MLH3Q9UHC1 1453 aa11.84□□□□□ -0.51
MUC1-221ENST00000610359 ALKQ9UM73 1620 aa11.84□□□□□ -0.51
MUC1-221ENST00000610359 SCAF1Q9H7N4 1312 aaKnown RBP11.84□□□□□ -0.51
MUC1-221ENST00000610359 PLA2R1Q13018 1463 aa11.83□□□□□ -0.52
MUC1-221ENST00000610359 ESF1Q9H501 851 aaKnown RBP11.83□□□□□ -0.52
MUC1-221ENST00000610359 CNTLNQ9NXG0 1405 aa11.83□□□□□ -0.52
MUC1-221ENST00000610359 ARHGAP5Q13017 1502 aa11.82□□□□□ -0.52
MUC1-221ENST00000610359 MYT1LQ9UL68 1186 aa11.82□□□□□ -0.52
MUC1-221ENST00000610359 CLTCQ00610 1675 aaKnown RBP11.81□□□□□ -0.52
MUC1-221ENST00000610359 ITSN2Q9NZM3 1697 aa11.81□□□□□ -0.52
MUC1-221ENST00000610359 CEP170BQ9Y4F5 1589 aaPredicted RBP11.81□□□□□ -0.52
MUC1-221ENST00000610359 PKD2Q13563 968 aa11.81□□□□□ -0.52
MUC1-221ENST00000610359 ZMYM3Q14202 1370 aa11.8□□□□□ -0.52
MUC1-221ENST00000610359 POLR1AO95602 1720 aaPredicted RBP11.8□□□□□ -0.52
MUC1-221ENST00000610359 TOM1O60784 492 aa11.79□□□□□ -0.52
MUC1-221ENST00000610359 FOXD1Q16676 465 aa11.79□□□□□ -0.52
MUC1-221ENST00000610359 PPP6R1Q9UPN7 881 aa11.79□□□□□ -0.52
MUC1-221ENST00000610359 LRRIQ1Q96JM4 1722 aa11.78□□□□□ -0.52
MUC1-221ENST00000610359 RGS17Q9UGC6 210 aaPredicted RBP11.78□□□□□ -0.52
MUC1-221ENST00000610359 CPS1P31327 1500 aa11.77□□□□□ -0.52
MUC1-221ENST00000610359 ABCC1P33527 1531 aa11.77□□□□□ -0.52
MUC1-221ENST00000610359 NEURL4Q96JN8 1562 aa11.77□□□□□ -0.53
MUC1-221ENST00000610359 DNMT1P26358 1616 aaKnown RBP11.76□□□□□ -0.53
MUC1-221ENST00000610359 CSRNP3Q8WYN3 585 aa11.76□□□□□ -0.53
MUC1-221ENST00000610359 PTPRKQ15262 1439 aa11.76□□□□□ -0.53
MUC1-221ENST00000610359 SHANK2Q9UPX8 1470 aa11.76□□□□□ -0.53
MUC1-221ENST00000610359 PREX2Q70Z35 1606 aa11.75□□□□□ -0.53
MUC1-221ENST00000610359 VWDEQ8N2E2 1590 aa11.74□□□□□ -0.53
MUC1-221ENST00000610359 STRCP1A6NGW2 1772 aa11.74□□□□□ -0.53
MUC1-221ENST00000610359 TROQ12816 1431 aaPredicted RBP11.73□□□□□ -0.53
MUC1-221ENST00000610359 CDC42BPAQ5VT25 1732 aa11.72□□□□□ -0.53
MUC1-221ENST00000610359 SAMD9LQ8IVG5 1584 aa11.71□□□□□ -0.53
MUC1-221ENST00000610359 A2ML1A8K2U0 1454 aa11.71□□□□□ -0.53
MUC1-221ENST00000610359 SETD1AO15047 1707 aaKnown RBP11.7□□□□□ -0.54
MUC1-221ENST00000610359 ATP1B4Q9UN42 357 aaPredicted RBP11.7□□□□□ -0.54
MUC1-221ENST00000610359 PLXNC1O60486 1568 aa11.7□□□□□ -0.54
MUC1-221ENST00000610359 CDK11AQ9UQ88 783 aaPredicted RBP11.69□□□□□ -0.54
MUC1-221ENST00000610359 POTEAQ6S8J7 498 aa11.67□□□□□ -0.54
MUC1-221ENST00000610359 CLIP1P30622 1438 aa11.67□□□□□ -0.54
MUC1-221ENST00000610359 RNF17Q9BXT8 1623 aaKnown RBP11.66□□□□□ -0.54
MUC1-221ENST00000610359 FMN1Q68DA7 1419 aa11.65□□□□□ -0.54
MUC1-221ENST00000610359 INO80Q9ULG1 1556 aaPredicted RBP11.65□□□□□ -0.54
MUC1-221ENST00000610359 ATP7AQ04656 1500 aa11.65□□□□□ -0.55
MUC1-221ENST00000610359 LRRC7Q96NW7 1537 aa11.65□□□□□ -0.55
MUC1-221ENST00000610359 XIRP1Q702N8 1843 aaKnown RBP11.65□□□□□ -0.55
MUC1-221ENST00000610359 GGT6Q6P531 493 aa11.64□□□□□ -0.55
MUC1-221ENST00000610359 SYCP2Q9BX26 1530 aa11.64□□□□□ -0.55
MUC1-221ENST00000610359 A2MP01023 1474 aa11.63□□□□□ -0.55
MUC1-221ENST00000610359 IQGAP1P46940 1657 aa11.63□□□□□ -0.55
MUC1-221ENST00000610359 DEPDC5O75140 1603 aa11.63□□□□□ -0.55
MUC1-221ENST00000610359 MED14O60244 1454 aa11.63□□□□□ -0.55
MUC1-221ENST00000610359 ARHGAP35Q9NRY4 1499 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms