RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 CDC42BPAQ5VT25 1732 aa17.43■□□□□ 0.38
VRK3-223ENST00000601341 CCER1Q8TC90 406 aaPredicted RBP17.42■□□□□ 0.38
VRK3-223ENST00000601341 PLCH2O75038 1416 aa17.41■□□□□ 0.38
VRK3-223ENST00000601341 CAMSAP2Q08AD1 1489 aa17.4■□□□□ 0.38
VRK3-223ENST00000601341 PREX2Q70Z35 1606 aa17.4■□□□□ 0.38
VRK3-223ENST00000601341 EFCAB2Q5VUJ9 269 aa17.39■□□□□ 0.37
VRK3-223ENST00000601341 ARHGAP5Q13017 1502 aa17.39■□□□□ 0.37
VRK3-223ENST00000601341 ABCA9Q8IUA7 1624 aa17.38■□□□□ 0.37
VRK3-223ENST00000601341 MYO5CQ9NQX4 1742 aa17.38■□□□□ 0.37
VRK3-223ENST00000601341 ARAP3Q8WWN8 1544 aa17.37■□□□□ 0.37
VRK3-223ENST00000601341 CDC42BPBQ9Y5S2 1711 aa17.36■□□□□ 0.37
VRK3-223ENST00000601341 PTPRKQ15262 1439 aa17.36■□□□□ 0.37
VRK3-223ENST00000601341 DAPK1P53355 1430 aa17.35■□□□□ 0.37
VRK3-223ENST00000601341 ABCC5O15440 1437 aa17.35■□□□□ 0.37
VRK3-223ENST00000601341 RSPH4AQ5TD94 716 aa17.34■□□□□ 0.37
VRK3-223ENST00000601341 PLEKHH2Q8IVE3 1493 aa17.34■□□□□ 0.37
VRK3-223ENST00000601341 DNMT1P26358 1616 aaKnown RBP17.33■□□□□ 0.36
VRK3-223ENST00000601341 SAMD9LQ8IVG5 1584 aa17.32■□□□□ 0.36
VRK3-223ENST00000601341 CD109Q6YHK3 1445 aa17.32■□□□□ 0.36
VRK3-223ENST00000601341 KIAA1107Q9UPP5 1409 aa17.32■□□□□ 0.36
VRK3-223ENST00000601341 HNRNPMP52272 730 aaKnown RBP eCLIP17.32■□□□□ 0.36
VRK3-223ENST00000601341 CHIC2Q9UKJ5 165 aa17.31■□□□□ 0.36
VRK3-223ENST00000601341 SETD5Q9C0A6 1442 aa17.31■□□□□ 0.36
VRK3-223ENST00000601341 MBD5Q9P267 1494 aa17.3■□□□□ 0.36
VRK3-223ENST00000601341 FANCAO15360 1455 aa17.29■□□□□ 0.36
VRK3-223ENST00000601341 TSPY4P0CV99 314 aa17.29■□□□□ 0.36
VRK3-223ENST00000601341 TSPY10P0CW01 314 aa17.29■□□□□ 0.36
VRK3-223ENST00000601341 HFM1A2PYH4 1435 aa17.29■□□□□ 0.36
VRK3-223ENST00000601341 ROCK1Q13464 1354 aa17.28■□□□□ 0.36
VRK3-223ENST00000601341 AKNAQ7Z591 1439 aa17.28■□□□□ 0.36
VRK3-223ENST00000601341 GLI2P10070 1586 aa17.28■□□□□ 0.36
VRK3-223ENST00000601341 ARHGEF5Q12774 1597 aa17.28■□□□□ 0.36
VRK3-223ENST00000601341 FAM69CQ0P6D2 419 aa17.28■□□□□ 0.36
VRK3-223ENST00000601341 CCDC141Q6ZP82 1450 aa17.27■□□□□ 0.35
VRK3-223ENST00000601341 RAB3GAP2Q9H2M9 1393 aa17.26■□□□□ 0.35
VRK3-223ENST00000601341 RRP7BPQ9NSQ0 103 aa17.26■□□□□ 0.35
VRK3-223ENST00000601341 SYCP2Q9BX26 1530 aa17.26■□□□□ 0.35
VRK3-223ENST00000601341 SHANK2Q9UPX8 1470 aa17.26■□□□□ 0.35
VRK3-223ENST00000601341 NAIPQ13075 1403 aa17.25■□□□□ 0.35
VRK3-223ENST00000601341 ABCC1P33527 1531 aa17.24■□□□□ 0.35
VRK3-223ENST00000601341 DIP2BQ9P265 1576 aa17.24■□□□□ 0.35
VRK3-223ENST00000601341 ANKRD30AQ9BXX3 1397 aa17.23■□□□□ 0.35
VRK3-223ENST00000601341 C9orf84Q5VXU9 1444 aa17.23■□□□□ 0.35
VRK3-223ENST00000601341 ARHGEF12Q9NZN5 1544 aa17.23■□□□□ 0.35
VRK3-223ENST00000601341 NCOA1Q15788 1441 aa17.22■□□□□ 0.35
VRK3-223ENST00000601341 ADGRL2O95490 1459 aa17.22■□□□□ 0.35
VRK3-223ENST00000601341 ADGRL1O94910 1474 aa17.22■□□□□ 0.35
VRK3-223ENST00000601341 CROCC2H7BZ55 1655 aa17.21■□□□□ 0.35
VRK3-223ENST00000601341 MAP3K4Q9Y6R4 1608 aa17.21■□□□□ 0.35
VRK3-223ENST00000601341 CFAP74Q9C0B2 1584 aa17.21■□□□□ 0.35
VRK3-223ENST00000601341 SCAPERQ9BY12 1400 aa17.21■□□□□ 0.34
VRK3-223ENST00000601341 NEO1Q92859 1461 aa17.2■□□□□ 0.34
VRK3-223ENST00000601341 TRAPPC8Q9Y2L5 1435 aa17.19■□□□□ 0.34
VRK3-223ENST00000601341 CLSPNQ9HAW4 1339 aa17.18■□□□□ 0.34
VRK3-223ENST00000601341 ACIN1Q9UKV3 1341 aaKnown RBP17.17■□□□□ 0.34
VRK3-223ENST00000601341 ADGBQ8N7X0 1667 aa17.17■□□□□ 0.34
VRK3-223ENST00000601341 AFAP1Q8N556 730 aa17.17■□□□□ 0.34
VRK3-223ENST00000601341 MAST1Q9Y2H9 1570 aa17.17■□□□□ 0.34
VRK3-223ENST00000601341 GCC2Q8IWJ2 1684 aa17.16■□□□□ 0.34
VRK3-223ENST00000601341 SPAG9O60271 1321 aaKnown RBP17.16■□□□□ 0.34
VRK3-223ENST00000601341 KIF15Q9NS87 1388 aa17.14■□□□□ 0.34
VRK3-223ENST00000601341 RTEL1-TNFRSF6BF6WH68 1400 aa17.14■□□□□ 0.33
VRK3-223ENST00000601341 DHX57Q6P158 1386 aaKnown RBP17.14■□□□□ 0.33
VRK3-223ENST00000601341 TEX14Q8IWB6 1497 aa17.14■□□□□ 0.33
VRK3-223ENST00000601341 ZNF518AQ6AHZ1 1483 aa17.13■□□□□ 0.33
VRK3-223ENST00000601341 ANKRD50Q9ULJ7 1429 aa17.12■□□□□ 0.33
VRK3-223ENST00000601341 POGZQ7Z3K3 1410 aa17.11■□□□□ 0.33
VRK3-223ENST00000601341 DENND4BO75064 1496 aaPredicted RBP17.1■□□□□ 0.33
VRK3-223ENST00000601341 KIF13AQ9H1H9 1805 aa17.09■□□□□ 0.33
VRK3-223ENST00000601341 PLXNC1O60486 1568 aa17.09■□□□□ 0.33
VRK3-223ENST00000601341 TRIM52Q96A61 297 aa17.09■□□□□ 0.33
VRK3-223ENST00000601341 MYT1LQ9UL68 1186 aa17.08■□□□□ 0.33
VRK3-223ENST00000601341 KDM6BO15054 1643 aa17.08■□□□□ 0.32
VRK3-223ENST00000601341 ZFYVE16Q7Z3T8 1539 aa17.07■□□□□ 0.32
VRK3-223ENST00000601341 ATP7AQ04656 1500 aa17.06■□□□□ 0.32
VRK3-223ENST00000601341 RAPGEF3O95398 923 aa17.06■□□□□ 0.32
VRK3-223ENST00000601341 DUOX2Q9NRD8 1548 aa17.06■□□□□ 0.32
VRK3-223ENST00000601341 KDM5CP41229 1560 aa17.06■□□□□ 0.32
VRK3-223ENST00000601341 PPRC1Q5VV67 1664 aaKnown RBP17.05■□□□□ 0.32
VRK3-223ENST00000601341 TSPOAP1O95153 1857 aa17.05■□□□□ 0.32
VRK3-223ENST00000601341 MLH3Q9UHC1 1453 aa17.04■□□□□ 0.32
VRK3-223ENST00000601341 INO80Q9ULG1 1556 aaPredicted RBP17.04■□□□□ 0.32
VRK3-223ENST00000601341 TRHP20396 242 aaPredicted RBP17.04■□□□□ 0.32
VRK3-223ENST00000601341 ERBINQ96RT1 1412 aa17.03■□□□□ 0.32
VRK3-223ENST00000601341 DIEXFQ68CQ4 756 aaKnown RBP17.02■□□□□ 0.32
VRK3-223ENST00000601341 ZNF316A6NFI3 1004 aaPredicted RBP17.01■□□□□ 0.31
VRK3-223ENST00000601341 MPHOSPH9Q99550 1183 aa17■□□□□ 0.31
VRK3-223ENST00000601341 HECW2Q9P2P5 1572 aa17■□□□□ 0.31
VRK3-223ENST00000601341 DHX29Q7Z478 1369 aaKnown RBP16.99■□□□□ 0.31
VRK3-223ENST00000601341 KIDINS220Q9ULH0 1771 aa16.99■□□□□ 0.31
VRK3-223ENST00000601341 RICTORQ6R327 1708 aa16.98■□□□□ 0.31
VRK3-223ENST00000601341 SLC4A1APQ9BWU0 796 aaKnown RBP16.98■□□□□ 0.31
VRK3-223ENST00000601341 NUP155O75694 1391 aa16.98■□□□□ 0.31
VRK3-223ENST00000601341 MAGI2Q86UL8 1455 aa16.95■□□□□ 0.3
VRK3-223ENST00000601341 FRMPD1Q5SYB0 1578 aa16.95■□□□□ 0.3
VRK3-223ENST00000601341 ZMYM4Q5VZL5 1548 aa16.95■□□□□ 0.3
VRK3-223ENST00000601341 A2MP01023 1474 aa16.94■□□□□ 0.3
VRK3-223ENST00000601341 PZPP20742 1482 aa16.94■□□□□ 0.3
VRK3-223ENST00000601341 KDM5DQ9BY66 1539 aa16.94■□□□□ 0.3
VRK3-223ENST00000601341 COL17A1Q9UMD9 1497 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms