RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 SCAPERQ9BY12 1400 aa24.01■■□□□ 1.43
LIG1-219ENST00000600055 KANK4Q5T7N3 995 aaPredicted RBP24■■□□□ 1.43
LIG1-219ENST00000600055 CDC42BPBQ9Y5S2 1711 aa24■■□□□ 1.43
LIG1-219ENST00000600055 GPATCH8Q9UKJ3 1502 aaKnown RBP24■■□□□ 1.43
LIG1-219ENST00000600055 PREX2Q70Z35 1606 aa23.99■■□□□ 1.43
LIG1-219ENST00000600055 CCNB3Q8WWL7 1395 aa23.99■■□□□ 1.43
LIG1-219ENST00000600055 CDC42BPAQ5VT25 1732 aa23.98■■□□□ 1.43
LIG1-219ENST00000600055 LRRC9Q6ZRR7 1453 aa23.97■■□□□ 1.43
LIG1-219ENST00000600055 MAP3K1Q13233 1512 aa23.96■■□□□ 1.43
LIG1-219ENST00000600055 ZNF777Q9ULD5 760 aaPredicted RBP23.95■■□□□ 1.42
LIG1-219ENST00000600055 RICTORQ6R327 1708 aa23.94■■□□□ 1.42
LIG1-219ENST00000600055 NCOA2Q15596 1464 aa23.94■■□□□ 1.42
LIG1-219ENST00000600055 POGZQ7Z3K3 1410 aa23.93■■□□□ 1.42
LIG1-219ENST00000600055 APLP2Q06481 763 aa23.93■■□□□ 1.42
LIG1-219ENST00000600055 CFDP1Q9UEE9 299 aaPredicted RBP23.93■■□□□ 1.42
LIG1-219ENST00000600055 ARHGEF12Q9NZN5 1544 aa23.9■■□□□ 1.42
LIG1-219ENST00000600055 AFAP1Q8N556 730 aa23.9■■□□□ 1.42
LIG1-219ENST00000600055 SUPT6HQ7KZ85 1726 aaKnown RBP23.9■■□□□ 1.42
LIG1-219ENST00000600055 ABCC1P33527 1531 aa23.89■■□□□ 1.41
LIG1-219ENST00000600055 SAMD9LQ8IVG5 1584 aa23.87■■□□□ 1.41
LIG1-219ENST00000600055 ZNF644Q9H582 1327 aaPredicted RBP23.86■■□□□ 1.41
LIG1-219ENST00000600055 TRAPPC8Q9Y2L5 1435 aa23.86■■□□□ 1.41
LIG1-219ENST00000600055 ZMYM4Q5VZL5 1548 aa23.86■■□□□ 1.41
LIG1-219ENST00000600055 KDM4FA0A1W2PPD8 638 aa23.86■■□□□ 1.41
LIG1-219ENST00000600055 HNRNPMP52272 730 aaKnown RBP eCLIP23.85■■□□□ 1.41
LIG1-219ENST00000600055 YEATS2Q9ULM3 1422 aa23.84■■□□□ 1.41
LIG1-219ENST00000600055 ZNF518AQ6AHZ1 1483 aa23.84■■□□□ 1.41
LIG1-219ENST00000600055 SYCP2Q9BX26 1530 aa23.82■■□□□ 1.4
LIG1-219ENST00000600055 ITSN2Q9NZM3 1697 aa23.82■■□□□ 1.4
LIG1-219ENST00000600055 ZFYVE16Q7Z3T8 1539 aa23.81■■□□□ 1.4
LIG1-219ENST00000600055 ARHGEF40Q8TER5 1519 aa23.81■■□□□ 1.4
LIG1-219ENST00000600055 MAGI2Q86UL8 1455 aa23.81■■□□□ 1.4
LIG1-219ENST00000600055 KDM5CP41229 1560 aa23.8■■□□□ 1.4
LIG1-219ENST00000600055 KIAA1107Q9UPP5 1409 aa23.79■■□□□ 1.4
LIG1-219ENST00000600055 MYT1LQ9UL68 1186 aa23.78■■□□□ 1.4
LIG1-219ENST00000600055 PLEKHH2Q8IVE3 1493 aa23.78■■□□□ 1.4
LIG1-219ENST00000600055 AEBP2Q6ZN18 517 aaPredicted RBP23.75■■□□□ 1.39
LIG1-219ENST00000600055 ARID4BQ4LE39 1312 aaPredicted RBP23.74■■□□□ 1.39
LIG1-219ENST00000600055 MYOM3Q5VTT5 1437 aa23.73■■□□□ 1.39
LIG1-219ENST00000600055 CAMSAP2Q08AD1 1489 aa23.73■■□□□ 1.39
LIG1-219ENST00000600055 MBD5Q9P267 1494 aa23.73■■□□□ 1.39
LIG1-219ENST00000600055 MLH3Q9UHC1 1453 aa23.73■■□□□ 1.39
LIG1-219ENST00000600055 HECW2Q9P2P5 1572 aa23.73■■□□□ 1.39
LIG1-219ENST00000600055 ATP10AO60312 1499 aa23.72■■□□□ 1.39
LIG1-219ENST00000600055 SPAG9O60271 1321 aaKnown RBP23.7■■□□□ 1.38
LIG1-219ENST00000600055 SIGLEC1Q9BZZ2 1709 aa23.68■■□□□ 1.38
LIG1-219ENST00000600055 DIP2CQ9Y2E4 1556 aa23.68■■□□□ 1.38
LIG1-219ENST00000600055 C9orf84Q5VXU9 1444 aa23.67■■□□□ 1.38
LIG1-219ENST00000600055 MIA2Q96PC5 1412 aa23.67■■□□□ 1.38
LIG1-219ENST00000600055 PPARGC1BQ86YN6 1023 aaKnown RBP23.67■■□□□ 1.38
LIG1-219ENST00000600055 ABCA6Q8N139 1617 aa23.66■■□□□ 1.38
LIG1-219ENST00000600055 KIDINS220Q9ULH0 1771 aa23.66■■□□□ 1.38
LIG1-219ENST00000600055 MLECQ14165 292 aa23.63■■□□□ 1.37
LIG1-219ENST00000600055 CCDC141Q6ZP82 1450 aa23.62■■□□□ 1.37
LIG1-219ENST00000600055 ATP7AQ04656 1500 aa23.62■■□□□ 1.37
LIG1-219ENST00000600055 BCORL1Q5H9F3 1711 aa23.62■■□□□ 1.37
LIG1-219ENST00000600055 INO80Q9ULG1 1556 aaPredicted RBP23.61■■□□□ 1.37
LIG1-219ENST00000600055 FGD6Q6ZV73 1430 aa23.6■■□□□ 1.37
LIG1-219ENST00000600055 RSPH4AQ5TD94 716 aa23.6■■□□□ 1.37
LIG1-219ENST00000600055 ADAMTSL3P82987 1691 aa23.59■■□□□ 1.37
LIG1-219ENST00000600055 ARHGEF5Q12774 1597 aa23.58■■□□□ 1.37
LIG1-219ENST00000600055 PTPN23Q9H3S7 1636 aa23.57■■□□□ 1.36
LIG1-219ENST00000600055 REREQ9P2R6 1566 aa23.57■■□□□ 1.36
LIG1-219ENST00000600055 RTEL1-TNFRSF6BF6WH68 1400 aa23.56■■□□□ 1.36
LIG1-219ENST00000600055 TSPY4P0CV99 314 aa23.55■■□□□ 1.36
LIG1-219ENST00000600055 TSPY10P0CW01 314 aa23.55■■□□□ 1.36
LIG1-219ENST00000600055 MADDQ8WXG6 1647 aa23.54■■□□□ 1.36
LIG1-219ENST00000600055 TCOF1Q13428 1488 aaKnown RBP23.54■■□□□ 1.36
LIG1-219ENST00000600055 A2MP01023 1474 aa23.52■■□□□ 1.36
LIG1-219ENST00000600055 AGLP35573 1532 aa23.51■■□□□ 1.35
LIG1-219ENST00000600055 ABCC5O15440 1437 aa23.5■■□□□ 1.35
LIG1-219ENST00000600055 FAM50AQ14320 339 aaKnown RBP23.49■■□□□ 1.35
LIG1-219ENST00000600055 PTPRMP28827 1452 aa23.49■■□□□ 1.35
LIG1-219ENST00000600055 PLXNC1O60486 1568 aa23.47■■□□□ 1.35
LIG1-219ENST00000600055 DAPK1P53355 1430 aa23.46■■□□□ 1.35
LIG1-219ENST00000600055 DHX29Q7Z478 1369 aaKnown RBP23.46■■□□□ 1.35
LIG1-219ENST00000600055 RIMS1Q86UR5 1692 aaKnown RBP23.46■■□□□ 1.35
LIG1-219ENST00000600055 ADGBQ8N7X0 1667 aa23.45■■□□□ 1.34
LIG1-219ENST00000600055 MAST1Q9Y2H9 1570 aa23.45■■□□□ 1.34
LIG1-219ENST00000600055 PLPPR3Q6T4P5 718 aa23.45■■□□□ 1.34
LIG1-219ENST00000600055 DNMT1P26358 1616 aaKnown RBP23.43■■□□□ 1.34
LIG1-219ENST00000600055 CHIC2Q9UKJ5 165 aa23.41■■□□□ 1.34
LIG1-219ENST00000600055 FER1L4A9Z1Z3 1794 aa23.41■■□□□ 1.34
LIG1-219ENST00000600055 GGT6Q6P531 493 aa23.4■■□□□ 1.34
LIG1-219ENST00000600055 SHANK2Q9UPX8 1470 aa23.4■■□□□ 1.34
LIG1-219ENST00000600055 CROCC2H7BZ55 1655 aa23.39■■□□□ 1.34
LIG1-219ENST00000600055 KIF3BO15066 747 aa23.38■■□□□ 1.33
LIG1-219ENST00000600055 RRP7BPQ9NSQ0 103 aa23.38■■□□□ 1.33
LIG1-219ENST00000600055 CEBPAP49715 358 aaPredicted RBP23.37■■□□□ 1.33
LIG1-219ENST00000600055 ESF1Q9H501 851 aaKnown RBP23.36■■□□□ 1.33
LIG1-219ENST00000600055 KIF15Q9NS87 1388 aa23.34■■□□□ 1.33
LIG1-219ENST00000600055 PTPRKQ15262 1439 aa23.33■■□□□ 1.32
LIG1-219ENST00000600055 ANKRD30AQ9BXX3 1397 aa23.31■■□□□ 1.32
LIG1-219ENST00000600055 DUOX2Q9NRD8 1548 aa23.3■■□□□ 1.32
LIG1-219ENST00000600055 ITGAEP38570 1179 aa23.3■■□□□ 1.32
LIG1-219ENST00000600055 NCOA1Q15788 1441 aa23.3■■□□□ 1.32
LIG1-219ENST00000600055 CNTLNQ9NXG0 1405 aa23.29■■□□□ 1.32
LIG1-219ENST00000600055 RRBP1Q9P2E9 1410 aaKnown RBP23.28■■□□□ 1.32
LIG1-219ENST00000600055 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.27■■□□□ 1.32
LIG1-219ENST00000600055 PPP6R1Q9UPN7 881 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 291 ms