RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ARHGAP5Q13017 1502 aa23.47■■□□□ 1.35
TRIM28-207ENST00000597136 GPATCH8Q9UKJ3 1502 aaKnown RBP23.47■■□□□ 1.35
TRIM28-207ENST00000597136 ARAP3Q8WWN8 1544 aa23.46■■□□□ 1.35
TRIM28-207ENST00000597136 NCOA2Q15596 1464 aa23.45■■□□□ 1.34
TRIM28-207ENST00000597136 EFCAB2Q5VUJ9 269 aa23.44■■□□□ 1.34
TRIM28-207ENST00000597136 RICTORQ6R327 1708 aa23.43■■□□□ 1.34
TRIM28-207ENST00000597136 CCNB3Q8WWL7 1395 aa23.43■■□□□ 1.34
TRIM28-207ENST00000597136 ITSN2Q9NZM3 1697 aa23.42■■□□□ 1.34
TRIM28-207ENST00000597136 PHLDB1Q86UU1 1377 aa23.41■■□□□ 1.34
TRIM28-207ENST00000597136 RAPGEF3O95398 923 aa23.41■■□□□ 1.34
TRIM28-207ENST00000597136 FRMPD1Q5SYB0 1578 aa23.39■■□□□ 1.33
TRIM28-207ENST00000597136 SAMD9LQ8IVG5 1584 aa23.38■■□□□ 1.33
TRIM28-207ENST00000597136 ZNF777Q9ULD5 760 aaPredicted RBP23.38■■□□□ 1.33
TRIM28-207ENST00000597136 ADGRL1O94910 1474 aa23.38■■□□□ 1.33
TRIM28-207ENST00000597136 PPARGC1BQ86YN6 1023 aaKnown RBP23.37■■□□□ 1.33
TRIM28-207ENST00000597136 SCAPERQ9BY12 1400 aa23.37■■□□□ 1.33
TRIM28-207ENST00000597136 CFDP1Q9UEE9 299 aaPredicted RBP23.36■■□□□ 1.33
TRIM28-207ENST00000597136 DENND4BO75064 1496 aaPredicted RBP23.34■■□□□ 1.33
TRIM28-207ENST00000597136 ZNF644Q9H582 1327 aaPredicted RBP23.34■■□□□ 1.33
TRIM28-207ENST00000597136 ARHGEF12Q9NZN5 1544 aa23.34■■□□□ 1.33
TRIM28-207ENST00000597136 ABCC1P33527 1531 aa23.32■■□□□ 1.32
TRIM28-207ENST00000597136 HNRNPMP52272 730 aaKnown RBP eCLIP23.28■■□□□ 1.32
TRIM28-207ENST00000597136 AFAP1Q8N556 730 aa23.28■■□□□ 1.32
TRIM28-207ENST00000597136 SYCP2Q9BX26 1530 aa23.28■■□□□ 1.32
TRIM28-207ENST00000597136 POGZQ7Z3K3 1410 aa23.26■■□□□ 1.31
TRIM28-207ENST00000597136 TRAPPC8Q9Y2L5 1435 aa23.26■■□□□ 1.31
TRIM28-207ENST00000597136 MYOM3Q5VTT5 1437 aa23.26■■□□□ 1.31
TRIM28-207ENST00000597136 CAMSAP2Q08AD1 1489 aa23.23■■□□□ 1.31
TRIM28-207ENST00000597136 ZMYM4Q5VZL5 1548 aa23.22■■□□□ 1.31
TRIM28-207ENST00000597136 KDM5CP41229 1560 aa23.21■■□□□ 1.31
TRIM28-207ENST00000597136 ZNF518AQ6AHZ1 1483 aa23.21■■□□□ 1.31
TRIM28-207ENST00000597136 KIAA1107Q9UPP5 1409 aa23.19■■□□□ 1.3
TRIM28-207ENST00000597136 PLEKHH2Q8IVE3 1493 aa23.19■■□□□ 1.3
TRIM28-207ENST00000597136 PTPN23Q9H3S7 1636 aa23.19■■□□□ 1.3
TRIM28-207ENST00000597136 KIDINS220Q9ULH0 1771 aa23.19■■□□□ 1.3
TRIM28-207ENST00000597136 MBD5Q9P267 1494 aa23.18■■□□□ 1.3
TRIM28-207ENST00000597136 YEATS2Q9ULM3 1422 aa23.18■■□□□ 1.3
TRIM28-207ENST00000597136 MIA2Q96PC5 1412 aa23.17■■□□□ 1.3
TRIM28-207ENST00000597136 SIGLEC1Q9BZZ2 1709 aa23.16■■□□□ 1.3
TRIM28-207ENST00000597136 HECW2Q9P2P5 1572 aa23.16■■□□□ 1.3
TRIM28-207ENST00000597136 FGD6Q6ZV73 1430 aa23.15■■□□□ 1.3
TRIM28-207ENST00000597136 ZFYVE16Q7Z3T8 1539 aa23.15■■□□□ 1.3
TRIM28-207ENST00000597136 ARHGEF40Q8TER5 1519 aa23.14■■□□□ 1.29
TRIM28-207ENST00000597136 MYT1LQ9UL68 1186 aa23.14■■□□□ 1.29
TRIM28-207ENST00000597136 MAGI2Q86UL8 1455 aa23.13■■□□□ 1.29
TRIM28-207ENST00000597136 ABCA6Q8N139 1617 aa23.13■■□□□ 1.29
TRIM28-207ENST00000597136 ARHGEF5Q12774 1597 aa23.11■■□□□ 1.29
TRIM28-207ENST00000597136 MLH3Q9UHC1 1453 aa23.11■■□□□ 1.29
TRIM28-207ENST00000597136 DIP2CQ9Y2E4 1556 aa23.09■■□□□ 1.29
TRIM28-207ENST00000597136 SPAG9O60271 1321 aaKnown RBP23.09■■□□□ 1.29
TRIM28-207ENST00000597136 INO80Q9ULG1 1556 aaPredicted RBP23.09■■□□□ 1.29
TRIM28-207ENST00000597136 TCOF1Q13428 1488 aaKnown RBP23.08■■□□□ 1.28
TRIM28-207ENST00000597136 ATP7AQ04656 1500 aa23.07■■□□□ 1.28
TRIM28-207ENST00000597136 CCDC141Q6ZP82 1450 aa23.07■■□□□ 1.28
TRIM28-207ENST00000597136 ATP10AO60312 1499 aa23.06■■□□□ 1.28
TRIM28-207ENST00000597136 CROCC2H7BZ55 1655 aa23.05■■□□□ 1.28
TRIM28-207ENST00000597136 ADGBQ8N7X0 1667 aa23.04■■□□□ 1.28
TRIM28-207ENST00000597136 FAM50AQ14320 339 aaKnown RBP23.04■■□□□ 1.28
TRIM28-207ENST00000597136 RSPH4AQ5TD94 716 aa23.04■■□□□ 1.28
TRIM28-207ENST00000597136 DNMT1P26358 1616 aaKnown RBP23.03■■□□□ 1.28
TRIM28-207ENST00000597136 ABCC5O15440 1437 aa23■■□□□ 1.27
TRIM28-207ENST00000597136 TSPY4P0CV99 314 aa23■■□□□ 1.27
TRIM28-207ENST00000597136 TSPY10P0CW01 314 aa23■■□□□ 1.27
TRIM28-207ENST00000597136 ARID4BQ4LE39 1312 aaPredicted RBP23■■□□□ 1.27
TRIM28-207ENST00000597136 BCORL1Q5H9F3 1711 aa22.99■■□□□ 1.27
TRIM28-207ENST00000597136 KDM4FA0A1W2PPD8 638 aa22.99■■□□□ 1.27
TRIM28-207ENST00000597136 C9orf84Q5VXU9 1444 aa22.98■■□□□ 1.27
TRIM28-207ENST00000597136 MAST1Q9Y2H9 1570 aa22.98■■□□□ 1.27
TRIM28-207ENST00000597136 RTEL1-TNFRSF6BF6WH68 1400 aa22.98■■□□□ 1.27
TRIM28-207ENST00000597136 DAPK1P53355 1430 aa22.98■■□□□ 1.27
TRIM28-207ENST00000597136 REREQ9P2R6 1566 aa22.96■■□□□ 1.27
TRIM28-207ENST00000597136 ADAMTSL3P82987 1691 aa22.94■■□□□ 1.26
TRIM28-207ENST00000597136 MLECQ14165 292 aa22.93■■□□□ 1.26
TRIM28-207ENST00000597136 CHIC2Q9UKJ5 165 aa22.93■■□□□ 1.26
TRIM28-207ENST00000597136 A2MP01023 1474 aa22.92■■□□□ 1.26
TRIM28-207ENST00000597136 RRBP1Q9P2E9 1410 aaKnown RBP22.91■■□□□ 1.26
TRIM28-207ENST00000597136 PLXNC1O60486 1568 aa22.9■■□□□ 1.26
TRIM28-207ENST00000597136 PTPRKQ15262 1439 aa22.9■■□□□ 1.26
TRIM28-207ENST00000597136 SHANK2Q9UPX8 1470 aa22.89■■□□□ 1.25
TRIM28-207ENST00000597136 FER1L4A9Z1Z3 1794 aa22.89■■□□□ 1.25
TRIM28-207ENST00000597136 ITGAEP38570 1179 aa22.89■■□□□ 1.25
TRIM28-207ENST00000597136 MADDQ8WXG6 1647 aa22.89■■□□□ 1.25
TRIM28-207ENST00000597136 AGLP35573 1532 aa22.88■■□□□ 1.25
TRIM28-207ENST00000597136 DHX29Q7Z478 1369 aaKnown RBP22.86■■□□□ 1.25
TRIM28-207ENST00000597136 RIMS1Q86UR5 1692 aaKnown RBP22.86■■□□□ 1.25
TRIM28-207ENST00000597136 RRP7BPQ9NSQ0 103 aa22.86■■□□□ 1.25
TRIM28-207ENST00000597136 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.86■■□□□ 1.25
TRIM28-207ENST00000597136 NCOA1Q15788 1441 aa22.82■■□□□ 1.24
TRIM28-207ENST00000597136 KIF15Q9NS87 1388 aa22.8■■□□□ 1.24
TRIM28-207ENST00000597136 ADGRL2O95490 1459 aa22.8■■□□□ 1.24
TRIM28-207ENST00000597136 KIF3BO15066 747 aa22.8■■□□□ 1.24
TRIM28-207ENST00000597136 DUOX2Q9NRD8 1548 aa22.8■■□□□ 1.24
TRIM28-207ENST00000597136 ANKRD30AQ9BXX3 1397 aa22.79■■□□□ 1.24
TRIM28-207ENST00000597136 GGT6Q6P531 493 aa22.79■■□□□ 1.24
TRIM28-207ENST00000597136 CFAP65Q6ZU64 1925 aaKnown RBP22.78■■□□□ 1.24
TRIM28-207ENST00000597136 CLTCQ00610 1675 aaKnown RBP22.76■■□□□ 1.23
TRIM28-207ENST00000597136 EIF2AK4Q9P2K8 1649 aaKnown RBP22.76■■□□□ 1.23
TRIM28-207ENST00000597136 TRIM26Q12899 539 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-207ENST00000597136 AEBP2Q6ZN18 517 aaPredicted RBP22.73■■□□□ 1.23
TRIM28-207ENST00000597136 PTPRMP28827 1452 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms