RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 RICTORQ6R327 1708 aa16.81■□□□□ 0.28
CCDC9-203ENST00000596938 ARHGAP5Q13017 1502 aa16.8■□□□□ 0.28
CCDC9-203ENST00000596938 ZMYM4Q5VZL5 1548 aa16.8■□□□□ 0.28
CCDC9-203ENST00000596938 AFAP1Q8N556 730 aa16.8■□□□□ 0.28
CCDC9-203ENST00000596938 MYO5CQ9NQX4 1742 aa16.79■□□□□ 0.28
CCDC9-203ENST00000596938 YEATS2Q9ULM3 1422 aa16.79■□□□□ 0.28
CCDC9-203ENST00000596938 MTUS2Q5JR59 1369 aa16.78■□□□□ 0.28
CCDC9-203ENST00000596938 ZNF518AQ6AHZ1 1483 aa16.77■□□□□ 0.28
CCDC9-203ENST00000596938 ZFYVE16Q7Z3T8 1539 aa16.76■□□□□ 0.27
CCDC9-203ENST00000596938 ARHGEF40Q8TER5 1519 aa16.76■□□□□ 0.27
CCDC9-203ENST00000596938 GPATCH8Q9UKJ3 1502 aaKnown RBP16.75■□□□□ 0.27
CCDC9-203ENST00000596938 ATP10AO60312 1499 aa16.74■□□□□ 0.27
CCDC9-203ENST00000596938 CFDP1Q9UEE9 299 aaPredicted RBP16.74■□□□□ 0.27
CCDC9-203ENST00000596938 ZNF777Q9ULD5 760 aaPredicted RBP16.73■□□□□ 0.27
CCDC9-203ENST00000596938 CCNB3Q8WWL7 1395 aa16.73■□□□□ 0.27
CCDC9-203ENST00000596938 ADAMTSL3P82987 1691 aa16.72■□□□□ 0.27
CCDC9-203ENST00000596938 TRAPPC8Q9Y2L5 1435 aa16.71■□□□□ 0.27
CCDC9-203ENST00000596938 ARHGEF12Q9NZN5 1544 aa16.71■□□□□ 0.27
CCDC9-203ENST00000596938 PREX2Q70Z35 1606 aa16.71■□□□□ 0.27
CCDC9-203ENST00000596938 CDC42BPBQ9Y5S2 1711 aa16.71■□□□□ 0.27
CCDC9-203ENST00000596938 MYT1LQ9UL68 1186 aa16.71■□□□□ 0.27
CCDC9-203ENST00000596938 PTPRMP28827 1452 aa16.71■□□□□ 0.27
CCDC9-203ENST00000596938 MLH3Q9UHC1 1453 aa16.71■□□□□ 0.27
CCDC9-203ENST00000596938 KDM5CP41229 1560 aa16.7■□□□□ 0.26
CCDC9-203ENST00000596938 C9orf84Q5VXU9 1444 aa16.7■□□□□ 0.26
CCDC9-203ENST00000596938 VPS8Q8N3P4 1428 aa16.7■□□□□ 0.26
CCDC9-203ENST00000596938 KIAA1107Q9UPP5 1409 aa16.7■□□□□ 0.26
CCDC9-203ENST00000596938 HNRNPMP52272 730 aaKnown RBP eCLIP16.69■□□□□ 0.26
CCDC9-203ENST00000596938 ABCC1P33527 1531 aa16.69■□□□□ 0.26
CCDC9-203ENST00000596938 BCORL1Q5H9F3 1711 aa16.68■□□□□ 0.26
CCDC9-203ENST00000596938 MLECQ14165 292 aa16.67■□□□□ 0.26
CCDC9-203ENST00000596938 PLEKHH2Q8IVE3 1493 aa16.67■□□□□ 0.26
CCDC9-203ENST00000596938 EHBP1L1Q8N3D4 1523 aa16.66■□□□□ 0.26
CCDC9-203ENST00000596938 CDC42BPAQ5VT25 1732 aa16.65■□□□□ 0.26
CCDC9-203ENST00000596938 SPAG9O60271 1321 aaKnown RBP16.65■□□□□ 0.26
CCDC9-203ENST00000596938 ZNF644Q9H582 1327 aaPredicted RBP16.63■□□□□ 0.25
CCDC9-203ENST00000596938 SAMD9LQ8IVG5 1584 aa16.63■□□□□ 0.25
CCDC9-203ENST00000596938 HECW2Q9P2P5 1572 aa16.62■□□□□ 0.25
CCDC9-203ENST00000596938 MADDQ8WXG6 1647 aa16.62■□□□□ 0.25
CCDC9-203ENST00000596938 SIGLEC1Q9BZZ2 1709 aa16.61■□□□□ 0.25
CCDC9-203ENST00000596938 NCOA2Q15596 1464 aa16.61■□□□□ 0.25
CCDC9-203ENST00000596938 MAP3K1Q13233 1512 aa16.6■□□□□ 0.25
CCDC9-203ENST00000596938 REREQ9P2R6 1566 aa16.6■□□□□ 0.25
CCDC9-203ENST00000596938 KANK4Q5T7N3 995 aaPredicted RBP16.6■□□□□ 0.25
CCDC9-203ENST00000596938 RSPH4AQ5TD94 716 aa16.6■□□□□ 0.25
CCDC9-203ENST00000596938 LRRC9Q6ZRR7 1453 aa16.6■□□□□ 0.25
CCDC9-203ENST00000596938 SYCP2Q9BX26 1530 aa16.6■□□□□ 0.25
CCDC9-203ENST00000596938 TIAM1Q13009 1591 aa16.6■□□□□ 0.25
CCDC9-203ENST00000596938 DIP2CQ9Y2E4 1556 aa16.6■□□□□ 0.25
CCDC9-203ENST00000596938 ITSN2Q9NZM3 1697 aa16.59■□□□□ 0.25
CCDC9-203ENST00000596938 MBD5Q9P267 1494 aa16.58■□□□□ 0.24
CCDC9-203ENST00000596938 AGLP35573 1532 aa16.58■□□□□ 0.24
CCDC9-203ENST00000596938 APLP2Q06481 763 aa16.56■□□□□ 0.24
CCDC9-203ENST00000596938 KIDINS220Q9ULH0 1771 aa16.55■□□□□ 0.24
CCDC9-203ENST00000596938 ABCA6Q8N139 1617 aa16.55■□□□□ 0.24
CCDC9-203ENST00000596938 PLPPR3Q6T4P5 718 aa16.54■□□□□ 0.24
CCDC9-203ENST00000596938 ESF1Q9H501 851 aaKnown RBP16.54■□□□□ 0.24
CCDC9-203ENST00000596938 RTEL1-TNFRSF6BF6WH68 1400 aa16.53■□□□□ 0.24
CCDC9-203ENST00000596938 SUPT6HQ7KZ85 1726 aaKnown RBP16.53■□□□□ 0.24
CCDC9-203ENST00000596938 RIMS1Q86UR5 1692 aaKnown RBP16.53■□□□□ 0.24
CCDC9-203ENST00000596938 CEBPAP49715 358 aaPredicted RBP16.53■□□□□ 0.24
CCDC9-203ENST00000596938 ATP7AQ04656 1500 aa16.51■□□□□ 0.23
CCDC9-203ENST00000596938 A2MP01023 1474 aa16.5■□□□□ 0.23
CCDC9-203ENST00000596938 LMTK3Q96Q04 1460 aa16.5■□□□□ 0.23
CCDC9-203ENST00000596938 TSPY4P0CV99 314 aa16.5■□□□□ 0.23
CCDC9-203ENST00000596938 TSPY10P0CW01 314 aa16.5■□□□□ 0.23
CCDC9-203ENST00000596938 PPP6R1Q9UPN7 881 aa16.5■□□□□ 0.23
CCDC9-203ENST00000596938 CAMSAP2Q08AD1 1489 aa16.48■□□□□ 0.23
CCDC9-203ENST00000596938 MIA2Q96PC5 1412 aa16.48■□□□□ 0.23
CCDC9-203ENST00000596938 CNTLNQ9NXG0 1405 aa16.48■□□□□ 0.23
CCDC9-203ENST00000596938 DHX29Q7Z478 1369 aaKnown RBP16.48■□□□□ 0.23
CCDC9-203ENST00000596938 CCDC141Q6ZP82 1450 aa16.48■□□□□ 0.23
CCDC9-203ENST00000596938 INO80Q9ULG1 1556 aaPredicted RBP16.47■□□□□ 0.23
CCDC9-203ENST00000596938 FER1L4A9Z1Z3 1794 aa16.46■□□□□ 0.23
CCDC9-203ENST00000596938 HSPA2P54652 639 aa16.46■□□□□ 0.23
CCDC9-203ENST00000596938 GGT6Q6P531 493 aa16.46■□□□□ 0.23
CCDC9-203ENST00000596938 MYOM3Q5VTT5 1437 aa16.45■□□□□ 0.22
CCDC9-203ENST00000596938 PLXNC1O60486 1568 aa16.44■□□□□ 0.22
CCDC9-203ENST00000596938 ZMYM3Q14202 1370 aa16.44■□□□□ 0.22
CCDC9-203ENST00000596938 ARHGEF5Q12774 1597 aa16.43■□□□□ 0.22
CCDC9-203ENST00000596938 KIF3BO15066 747 aa16.41■□□□□ 0.22
CCDC9-203ENST00000596938 NPATQ14207 1427 aa16.38■□□□□ 0.21
CCDC9-203ENST00000596938 UHRF1BP1Q6BDS2 1440 aa16.38■□□□□ 0.21
CCDC9-203ENST00000596938 ADGBQ8N7X0 1667 aa16.38■□□□□ 0.21
CCDC9-203ENST00000596938 SETD1BQ9UPS6 1966 aaKnown RBP16.35■□□□□ 0.21
CCDC9-203ENST00000596938 DMRT2Q9Y5R5 561 aa16.34■□□□□ 0.21
CCDC9-203ENST00000596938 WASHC2CQ9Y4E1 1318 aa16.34■□□□□ 0.21
CCDC9-203ENST00000596938 FGD6Q6ZV73 1430 aa16.34■□□□□ 0.21
CCDC9-203ENST00000596938 C3P01024 1663 aa16.34■□□□□ 0.21
CCDC9-203ENST00000596938 ABCC5O15440 1437 aa16.33■□□□□ 0.2
CCDC9-203ENST00000596938 MAST1Q9Y2H9 1570 aa16.33■□□□□ 0.2
CCDC9-203ENST00000596938 MROH2AA6NES4 1674 aa16.32■□□□□ 0.2
CCDC9-203ENST00000596938 PTPRKQ15262 1439 aa16.32■□□□□ 0.2
CCDC9-203ENST00000596938 ILDR1Q86SU0 546 aaPredicted RBP16.32■□□□□ 0.2
CCDC9-203ENST00000596938 PREX1Q8TCU6 1659 aa16.32■□□□□ 0.2
CCDC9-203ENST00000596938 TCOF1Q13428 1488 aaKnown RBP16.31■□□□□ 0.2
CCDC9-203ENST00000596938 RRP7BPQ9NSQ0 103 aa16.29■□□□□ 0.2
CCDC9-203ENST00000596938 FAM135AQ9P2D6 1515 aa16.29■□□□□ 0.2
CCDC9-203ENST00000596938 PTPN23Q9H3S7 1636 aa16.28■□□□□ 0.2
CCDC9-203ENST00000596938 SHANK2Q9UPX8 1470 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms