RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GRIN2BQ13224 1484 aa20.76■□□□□ 0.91
UPF1-204ENST00000596842 SUPT6HQ7KZ85 1726 aaKnown RBP20.76■□□□□ 0.91
UPF1-204ENST00000596842 CUL7Q14999 1698 aa20.76■□□□□ 0.91
UPF1-204ENST00000596842 MAGI3Q5TCQ9 1506 aa20.75■□□□□ 0.91
UPF1-204ENST00000596842 KDM6BO15054 1643 aa20.73■□□□□ 0.91
UPF1-204ENST00000596842 EHBP1L1Q8N3D4 1523 aa20.73■□□□□ 0.91
UPF1-204ENST00000596842 CFDP1Q9UEE9 299 aaPredicted RBP20.73■□□□□ 0.91
UPF1-204ENST00000596842 TMC1Q8TDI8 760 aa20.71■□□□□ 0.91
UPF1-204ENST00000596842 PDS5BQ9NTI5 1447 aa20.69■□□□□ 0.9
UPF1-204ENST00000596842 PKD2Q13563 968 aa20.69■□□□□ 0.9
UPF1-204ENST00000596842 ZBED9Q6R2W3 1325 aa20.68■□□□□ 0.9
UPF1-204ENST00000596842 UGGT2Q9NYU1 1516 aa20.68■□□□□ 0.9
UPF1-204ENST00000596842 LRRIQ1Q96JM4 1722 aa20.67■□□□□ 0.9
UPF1-204ENST00000596842 KDM5BQ9UGL1 1544 aa20.67■□□□□ 0.9
UPF1-204ENST00000596842 EPRSP07814 1512 aaKnown RBP20.67■□□□□ 0.9
UPF1-204ENST00000596842 DENND4BO75064 1496 aaPredicted RBP20.67■□□□□ 0.9
UPF1-204ENST00000596842 AKNAQ7Z591 1439 aa20.66■□□□□ 0.9
UPF1-204ENST00000596842 FANCIQ9NVI1 1328 aa20.65■□□□□ 0.9
UPF1-204ENST00000596842 NPM2Q86SE8 214 aaKnown RBP20.65■□□□□ 0.9
UPF1-204ENST00000596842 DEKP35659 375 aaKnown RBP20.64■□□□□ 0.89
UPF1-204ENST00000596842 RTL5Q5HYW3 569 aaPredicted RBP20.63■□□□□ 0.89
UPF1-204ENST00000596842 CARD11Q9BXL7 1154 aa20.63■□□□□ 0.89
UPF1-204ENST00000596842 ANKRD30BQ9BXX2 1392 aa20.62■□□□□ 0.89
UPF1-204ENST00000596842 NCOA1Q15788 1441 aa20.62■□□□□ 0.89
UPF1-204ENST00000596842 THOC2Q8NI27 1593 aaKnown RBP20.61■□□□□ 0.89
UPF1-204ENST00000596842 SAMD9Q5K651 1589 aa20.61■□□□□ 0.89
UPF1-204ENST00000596842 RGL3Q3MIN7 710 aa20.58■□□□□ 0.89
UPF1-204ENST00000596842 USP47Q96K76 1375 aa20.58■□□□□ 0.88
UPF1-204ENST00000596842 DAPK1P53355 1430 aa20.58■□□□□ 0.88
UPF1-204ENST00000596842 LAMC3Q9Y6N6 1575 aa20.56■□□□□ 0.88
UPF1-204ENST00000596842 DCAF11Q8TEB1 546 aa20.56■□□□□ 0.88
UPF1-204ENST00000596842 CHMP7Q8WUX9 453 aaPredicted RBP20.56■□□□□ 0.88
UPF1-204ENST00000596842 ABCC5O15440 1437 aa20.55■□□□□ 0.88
UPF1-204ENST00000596842 ERICH6BQ5W0A0 696 aa20.55■□□□□ 0.88
UPF1-204ENST00000596842 NUDCQ9Y266 331 aa20.55■□□□□ 0.88
UPF1-204ENST00000596842 PAK3O75914 559 aaPredicted RBP20.55■□□□□ 0.88
UPF1-204ENST00000596842 HECW1Q76N89 1606 aa20.54■□□□□ 0.88
UPF1-204ENST00000596842 ST20-MTHFSA0A0A6YYL1 179 aa20.54■□□□□ 0.88
UPF1-204ENST00000596842 PRG4Q92954 1404 aaPredicted RBP20.53■□□□□ 0.88
UPF1-204ENST00000596842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.53■□□□□ 0.881e-7■□□□□ 9.5
UPF1-204ENST00000596842 MIA2Q96PC5 1412 aa20.53■□□□□ 0.88
UPF1-204ENST00000596842 RPRD2Q5VT52 1461 aaKnown RBP20.53■□□□□ 0.88
UPF1-204ENST00000596842 NOP58Q9Y2X3 529 aaKnown RBP20.53■□□□□ 0.88
UPF1-204ENST00000596842 ABCA5Q8WWZ7 1642 aa20.52■□□□□ 0.88
UPF1-204ENST00000596842 ANP32AP39687 249 aaKnown RBP20.52■□□□□ 0.87
UPF1-204ENST00000596842 TCOF1Q13428 1488 aaKnown RBP20.51■□□□□ 0.87
UPF1-204ENST00000596842 IQGAP2Q13576 1575 aa20.51■□□□□ 0.87
UPF1-204ENST00000596842 NUP155O75694 1391 aa20.5■□□□□ 0.87
UPF1-204ENST00000596842 TSPY4P0CV99 314 aa20.47■□□□□ 0.87
UPF1-204ENST00000596842 TSPY10P0CW01 314 aa20.47■□□□□ 0.87
UPF1-204ENST00000596842 HNRNPMP52272 730 aaKnown RBP eCLIP20.46■□□□□ 0.87
UPF1-204ENST00000596842 ARHGEF11O15085 1522 aa20.46■□□□□ 0.87
UPF1-204ENST00000596842 CC2D1BQ5T0F9 858 aaKnown RBP20.45■□□□□ 0.86
UPF1-204ENST00000596842 ZNF608Q9ULD9 1512 aaPredicted RBP20.44■□□□□ 0.86
UPF1-204ENST00000596842 TEX14Q8IWB6 1497 aa20.44■□□□□ 0.86
UPF1-204ENST00000596842 PLEKHD1A6NEE1 506 aa20.44■□□□□ 0.86
UPF1-204ENST00000596842 ZBTB47Q9UFB7 747 aaPredicted RBP20.44■□□□□ 0.86
UPF1-204ENST00000596842 PNISRQ8TF01 805 aaKnown RBP20.43■□□□□ 0.86
UPF1-204ENST00000596842 GCC2Q8IWJ2 1684 aa20.43■□□□□ 0.86
UPF1-204ENST00000596842 KIF21AQ7Z4S6 1674 aa20.42■□□□□ 0.86
UPF1-204ENST00000596842 EXOC6Q8TAG9 804 aa20.42■□□□□ 0.86
UPF1-204ENST00000596842 SPATA31E1Q6ZUB1 1445 aa20.4■□□□□ 0.86
UPF1-204ENST00000596842 ROCK1Q13464 1354 aa20.4■□□□□ 0.86
UPF1-204ENST00000596842 WDR62O43379 1518 aa20.39■□□□□ 0.86
UPF1-204ENST00000596842 DHX29Q7Z478 1369 aaKnown RBP20.39■□□□□ 0.86
UPF1-204ENST00000596842 PLIN1O60240 522 aa20.39■□□□□ 0.86
UPF1-204ENST00000596842 ANKRD30AQ9BXX3 1397 aa20.39■□□□□ 0.85
UPF1-204ENST00000596842 PLB1Q6P1J6 1458 aa20.38■□□□□ 0.85
UPF1-204ENST00000596842 SKAP1Q86WV1 359 aa20.37■□□□□ 0.85
UPF1-204ENST00000596842 NUP153P49790 1475 aaKnown RBP20.37■□□□□ 0.85
UPF1-204ENST00000596842 LAS1LQ9Y4W2 734 aaKnown RBP20.37■□□□□ 0.85
UPF1-204ENST00000596842 SMG6Q86US8 1419 aaKnown RBP20.36■□□□□ 0.85
UPF1-204ENST00000596842 KIAA1107Q9UPP5 1409 aa20.36■□□□□ 0.85
UPF1-204ENST00000596842 CDCA7LQ96GN5 454 aa20.36■□□□□ 0.85
UPF1-204ENST00000596842 ANKRD50Q9ULJ7 1429 aa20.36■□□□□ 0.85
UPF1-204ENST00000596842 ROCK2O75116 1388 aaKnown RBP20.35■□□□□ 0.85
UPF1-204ENST00000596842 PZPP20742 1482 aa20.35■□□□□ 0.85
UPF1-204ENST00000596842 CAMSAP2Q08AD1 1489 aa20.35■□□□□ 0.85
UPF1-204ENST00000596842 JPH4Q96JJ6 628 aa20.34■□□□□ 0.85
UPF1-204ENST00000596842 RCAN3Q9UKA8 241 aa20.34■□□□□ 0.85
UPF1-204ENST00000596842 NBPF1Q3BBV0 1214 aa20.33■□□□□ 0.85
UPF1-204ENST00000596842 TARBP1Q13395 1621 aaKnown RBP20.33■□□□□ 0.84
UPF1-204ENST00000596842 IPO9Q96P70 1041 aaKnown RBP20.32■□□□□ 0.84
UPF1-204ENST00000596842 RRP1P56182 461 aaKnown RBP20.3■□□□□ 0.84
UPF1-204ENST00000596842 KIF15Q9NS87 1388 aa20.3■□□□□ 0.84
UPF1-204ENST00000596842 MYBBP1AQ9BQG0 1328 aaKnown RBP20.3■□□□□ 0.84
UPF1-204ENST00000596842 TROQ12816 1431 aaPredicted RBP20.3■□□□□ 0.84
UPF1-204ENST00000596842 DNMT1P26358 1616 aaKnown RBP20.28■□□□□ 0.84
UPF1-204ENST00000596842 ADAMTS12P58397 1594 aa20.28■□□□□ 0.84
UPF1-204ENST00000596842 DISP1Q96F81 1524 aa20.27■□□□□ 0.84
UPF1-204ENST00000596842 PBRM1Q86U86 1689 aa20.27■□□□□ 0.84
UPF1-204ENST00000596842 KIAA0586Q9BVV6 1533 aa20.26■□□□□ 0.83
UPF1-204ENST00000596842 GPATCH8Q9UKJ3 1502 aaKnown RBP20.26■□□□□ 0.83
UPF1-204ENST00000596842 BCORL1Q5H9F3 1711 aa20.25■□□□□ 0.83
UPF1-204ENST00000596842 RALBP1Q15311 655 aa20.25■□□□□ 0.83
UPF1-204ENST00000596842 NLRP13Q86W25 1043 aa20.23■□□□□ 0.83
UPF1-204ENST00000596842 MRC2Q9UBG0 1479 aa20.23■□□□□ 0.83
UPF1-204ENST00000596842 KTN1Q86UP2 1357 aaKnown RBP20.23■□□□□ 0.83
UPF1-204ENST00000596842 PANK3Q9H999 370 aa20.22■□□□□ 0.83
UPF1-204ENST00000596842 KIAA0556O60303 1618 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms