RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ARHGAP5Q13017 1502 aa22.28■■□□□ 1.16
VRK3-212ENST00000596814 ARAP3Q8WWN8 1544 aa22.27■■□□□ 1.16
VRK3-212ENST00000596814 DIP2BQ9P265 1576 aa22.27■■□□□ 1.16
VRK3-212ENST00000596814 PLCH2O75038 1416 aa22.27■■□□□ 1.16
VRK3-212ENST00000596814 CAMSAP2Q08AD1 1489 aa22.27■■□□□ 1.15
VRK3-212ENST00000596814 GLI2P10070 1586 aa22.26■■□□□ 1.15
VRK3-212ENST00000596814 SAMD9LQ8IVG5 1584 aa22.23■■□□□ 1.15
VRK3-212ENST00000596814 MAP3K4Q9Y6R4 1608 aa22.22■■□□□ 1.15
VRK3-212ENST00000596814 ZNF777Q9ULD5 760 aaPredicted RBP22.21■■□□□ 1.15
VRK3-212ENST00000596814 ZNF644Q9H582 1327 aaPredicted RBP22.2■■□□□ 1.15
VRK3-212ENST00000596814 CD109Q6YHK3 1445 aa22.2■■□□□ 1.14
VRK3-212ENST00000596814 DNMT1P26358 1616 aaKnown RBP22.19■■□□□ 1.14
VRK3-212ENST00000596814 ITGAEP38570 1179 aa22.17■■□□□ 1.14
VRK3-212ENST00000596814 KIF13AQ9H1H9 1805 aa22.17■■□□□ 1.14
VRK3-212ENST00000596814 CFAP74Q9C0B2 1584 aa22.17■■□□□ 1.14
VRK3-212ENST00000596814 EFCAB2Q5VUJ9 269 aa22.17■■□□□ 1.14
VRK3-212ENST00000596814 FANCAO15360 1455 aa22.16■■□□□ 1.14
VRK3-212ENST00000596814 PLEKHH2Q8IVE3 1493 aa22.16■■□□□ 1.14
VRK3-212ENST00000596814 FAM69CQ0P6D2 419 aa22.15■■□□□ 1.14
VRK3-212ENST00000596814 ABCC1P33527 1531 aa22.14■■□□□ 1.14
VRK3-212ENST00000596814 SYCP2Q9BX26 1530 aa22.14■■□□□ 1.14
VRK3-212ENST00000596814 CROCC2H7BZ55 1655 aa22.14■■□□□ 1.13
VRK3-212ENST00000596814 DAPK1P53355 1430 aa22.13■■□□□ 1.13
VRK3-212ENST00000596814 ARHGEF5Q12774 1597 aa22.13■■□□□ 1.13
VRK3-212ENST00000596814 KIAA1107Q9UPP5 1409 aa22.11■■□□□ 1.13
VRK3-212ENST00000596814 ABCC5O15440 1437 aa22.11■■□□□ 1.13
VRK3-212ENST00000596814 PTPRKQ15262 1439 aa22.1■■□□□ 1.13
VRK3-212ENST00000596814 MBD5Q9P267 1494 aa22.1■■□□□ 1.13
VRK3-212ENST00000596814 CCDC141Q6ZP82 1450 aa22.09■■□□□ 1.13
VRK3-212ENST00000596814 TSPOAP1O95153 1857 aa22.08■■□□□ 1.13
VRK3-212ENST00000596814 NEO1Q92859 1461 aa22.07■■□□□ 1.12
VRK3-212ENST00000596814 PPRC1Q5VV67 1664 aaKnown RBP22.07■■□□□ 1.12
VRK3-212ENST00000596814 AKNAQ7Z591 1439 aa22.07■■□□□ 1.12
VRK3-212ENST00000596814 ADGRL1O94910 1474 aa22.07■■□□□ 1.12
VRK3-212ENST00000596814 ARHGEF12Q9NZN5 1544 aa22.07■■□□□ 1.12
VRK3-212ENST00000596814 HNRNPMP52272 730 aaKnown RBP eCLIP22.06■■□□□ 1.12
VRK3-212ENST00000596814 SHANK2Q9UPX8 1470 aa22.06■■□□□ 1.12
VRK3-212ENST00000596814 ADGBQ8N7X0 1667 aa22.06■■□□□ 1.12
VRK3-212ENST00000596814 TEX14Q8IWB6 1497 aa22.04■■□□□ 1.12
VRK3-212ENST00000596814 RSPH4AQ5TD94 716 aa22.03■■□□□ 1.12
VRK3-212ENST00000596814 C9orf84Q5VXU9 1444 aa22.01■■□□□ 1.11
VRK3-212ENST00000596814 SCAPERQ9BY12 1400 aa22.01■■□□□ 1.11
VRK3-212ENST00000596814 MAST1Q9Y2H9 1570 aa22■■□□□ 1.11
VRK3-212ENST00000596814 ADGRL2O95490 1459 aa22■■□□□ 1.11
VRK3-212ENST00000596814 CHIC2Q9UKJ5 165 aa22■■□□□ 1.11
VRK3-212ENST00000596814 TRAPPC8Q9Y2L5 1435 aa22■■□□□ 1.11
VRK3-212ENST00000596814 ROCK1Q13464 1354 aa21.99■■□□□ 1.11
VRK3-212ENST00000596814 GCC2Q8IWJ2 1684 aa21.99■■□□□ 1.11
VRK3-212ENST00000596814 HFM1A2PYH4 1435 aa21.98■■□□□ 1.11
VRK3-212ENST00000596814 TSPY4P0CV99 314 aa21.98■■□□□ 1.11
VRK3-212ENST00000596814 TSPY10P0CW01 314 aa21.98■■□□□ 1.11
VRK3-212ENST00000596814 POGZQ7Z3K3 1410 aa21.95■■□□□ 1.1
VRK3-212ENST00000596814 SETD5Q9C0A6 1442 aa21.95■■□□□ 1.1
VRK3-212ENST00000596814 ZNF518AQ6AHZ1 1483 aa21.95■■□□□ 1.1
VRK3-212ENST00000596814 NAIPQ13075 1403 aa21.94■■□□□ 1.1
VRK3-212ENST00000596814 ANKRD30AQ9BXX3 1397 aa21.94■■□□□ 1.1
VRK3-212ENST00000596814 NCOA1Q15788 1441 aa21.94■■□□□ 1.1
VRK3-212ENST00000596814 DENND4BO75064 1496 aaPredicted RBP21.93■■□□□ 1.1
VRK3-212ENST00000596814 PLXNC1O60486 1568 aa21.92■■□□□ 1.1
VRK3-212ENST00000596814 RRP7BPQ9NSQ0 103 aa21.92■■□□□ 1.1
VRK3-212ENST00000596814 ZFYVE16Q7Z3T8 1539 aa21.92■■□□□ 1.1
VRK3-212ENST00000596814 KDM5CP41229 1560 aa21.92■■□□□ 1.1
VRK3-212ENST00000596814 INO80Q9ULG1 1556 aaPredicted RBP21.92■■□□□ 1.1
VRK3-212ENST00000596814 TRHP20396 242 aaPredicted RBP21.92■■□□□ 1.1
VRK3-212ENST00000596814 RICTORQ6R327 1708 aa21.91■■□□□ 1.1
VRK3-212ENST00000596814 AFAP1Q8N556 730 aa21.91■■□□□ 1.1
VRK3-212ENST00000596814 RAB3GAP2Q9H2M9 1393 aa21.9■■□□□ 1.1
VRK3-212ENST00000596814 SPAG9O60271 1321 aaKnown RBP21.89■■□□□ 1.1
VRK3-212ENST00000596814 RTEL1-TNFRSF6BF6WH68 1400 aa21.89■■□□□ 1.09
VRK3-212ENST00000596814 ATP7AQ04656 1500 aa21.89■■□□□ 1.09
VRK3-212ENST00000596814 KIF15Q9NS87 1388 aa21.87■■□□□ 1.09
VRK3-212ENST00000596814 FRMPD1Q5SYB0 1578 aa21.87■■□□□ 1.09
VRK3-212ENST00000596814 HECW2Q9P2P5 1572 aa21.87■■□□□ 1.09
VRK3-212ENST00000596814 KIDINS220Q9ULH0 1771 aa21.85■■□□□ 1.09
VRK3-212ENST00000596814 KDM6BO15054 1643 aa21.84■■□□□ 1.09
VRK3-212ENST00000596814 MLH3Q9UHC1 1453 aa21.83■■□□□ 1.09
VRK3-212ENST00000596814 RAPGEF3O95398 923 aa21.83■■□□□ 1.08
VRK3-212ENST00000596814 ZMYM4Q5VZL5 1548 aa21.82■■□□□ 1.08
VRK3-212ENST00000596814 DUOX2Q9NRD8 1548 aa21.81■■□□□ 1.08
VRK3-212ENST00000596814 ANKRD50Q9ULJ7 1429 aa21.81■■□□□ 1.08
VRK3-212ENST00000596814 HRCP23327 699 aa21.8■■□□□ 1.08
VRK3-212ENST00000596814 MYT1LQ9UL68 1186 aa21.8■■□□□ 1.08
VRK3-212ENST00000596814 ABCA6Q8N139 1617 aa21.77■■□□□ 1.08
VRK3-212ENST00000596814 COL17A1Q9UMD9 1497 aaPredicted RBP21.77■■□□□ 1.08
VRK3-212ENST00000596814 ERBINQ96RT1 1412 aa21.76■■□□□ 1.07
VRK3-212ENST00000596814 DIP2CQ9Y2E4 1556 aa21.74■■□□□ 1.07
VRK3-212ENST00000596814 MAGI2Q86UL8 1455 aa21.74■■□□□ 1.07
VRK3-212ENST00000596814 ACIN1Q9UKV3 1341 aaKnown RBP21.72■■□□□ 1.07
VRK3-212ENST00000596814 EIF2AK4Q9P2K8 1649 aaKnown RBP21.71■■□□□ 1.07
VRK3-212ENST00000596814 A2MP01023 1474 aa21.7■■□□□ 1.06
VRK3-212ENST00000596814 DHX57Q6P158 1386 aaKnown RBP21.7■■□□□ 1.06
VRK3-212ENST00000596814 YEATS2Q9ULM3 1422 aa21.7■■□□□ 1.06
VRK3-212ENST00000596814 CCER1Q8TC90 406 aaPredicted RBP21.69■■□□□ 1.06
VRK3-212ENST00000596814 DHX29Q7Z478 1369 aaKnown RBP21.69■■□□□ 1.06
VRK3-212ENST00000596814 UNC13BO14795 1591 aa21.68■■□□□ 1.06
VRK3-212ENST00000596814 ARHGEF40Q8TER5 1519 aa21.68■■□□□ 1.06
VRK3-212ENST00000596814 TRIM52Q96A61 297 aa21.66■■□□□ 1.06
VRK3-212ENST00000596814 KDM5DQ9BY66 1539 aa21.65■■□□□ 1.06
VRK3-212ENST00000596814 DEPDC5O75140 1603 aa21.64■■□□□ 1.05
VRK3-212ENST00000596814 BCORL1Q5H9F3 1711 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms