RNA–Protein interactions for RNA: ENST00000594439.5

HOMER3-206, Transcript of homer scaffold protein 3, humanhuman

TSL 1 (best) BASIC

Gene HOMER3, Length 982 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-206ENST00000594439 RAPGEF3O95398 923 aa34.73■■■■□ 3.15
HOMER3-206ENST00000594439 DENND4BO75064 1496 aaPredicted RBP34.71■■■■□ 3.15
HOMER3-206ENST00000594439 RICTORQ6R327 1708 aa34.71■■■■□ 3.15
HOMER3-206ENST00000594439 ADGRL1O94910 1474 aa34.71■■■■□ 3.15
HOMER3-206ENST00000594439 MAP3K1Q13233 1512 aa34.68■■■■□ 3.14
HOMER3-206ENST00000594439 GPATCH8Q9UKJ3 1502 aaKnown RBP34.66■■■■□ 3.14
HOMER3-206ENST00000594439 SCAPERQ9BY12 1400 aa34.66■■■■□ 3.14
HOMER3-206ENST00000594439 LRRC9Q6ZRR7 1453 aa34.61■■■■□ 3.13
HOMER3-206ENST00000594439 CCNB3Q8WWL7 1395 aa34.61■■■■□ 3.13
HOMER3-206ENST00000594439 POGZQ7Z3K3 1410 aa34.6■■■■□ 3.13
HOMER3-206ENST00000594439 SUPT6HQ7KZ85 1726 aaKnown RBP34.6■■■■□ 3.13
HOMER3-206ENST00000594439 ZMYM4Q5VZL5 1548 aa34.57■■■■□ 3.12
HOMER3-206ENST00000594439 NCOA2Q15596 1464 aa34.56■■■■□ 3.12
HOMER3-206ENST00000594439 ABCC1P33527 1531 aa34.55■■■■□ 3.12
HOMER3-206ENST00000594439 KANK4Q5T7N3 995 aaPredicted RBP34.53■■■■□ 3.12
HOMER3-206ENST00000594439 SAMD9LQ8IVG5 1584 aa34.53■■■■□ 3.12
HOMER3-206ENST00000594439 ITSN2Q9NZM3 1697 aa34.52■■■■□ 3.12
HOMER3-206ENST00000594439 ARHGEF12Q9NZN5 1544 aa34.51■■■■□ 3.12
HOMER3-206ENST00000594439 CFDP1Q9UEE9 299 aaPredicted RBP34.5■■■■□ 3.11
HOMER3-206ENST00000594439 ARHGEF40Q8TER5 1519 aa34.49■■■■□ 3.11
HOMER3-206ENST00000594439 ZNF518AQ6AHZ1 1483 aa34.48■■■■□ 3.11
HOMER3-206ENST00000594439 ZNF777Q9ULD5 760 aaPredicted RBP34.48■■■■□ 3.11
HOMER3-206ENST00000594439 MAGI2Q86UL8 1455 aa34.47■■■■□ 3.11
HOMER3-206ENST00000594439 APLP2Q06481 763 aa34.47■■■■□ 3.11
HOMER3-206ENST00000594439 KDM5CP41229 1560 aa34.46■■■■□ 3.11
HOMER3-206ENST00000594439 ZFYVE16Q7Z3T8 1539 aa34.45■■■■□ 3.1
HOMER3-206ENST00000594439 AFAP1Q8N556 730 aa34.44■■■■□ 3.1
HOMER3-206ENST00000594439 TRAPPC8Q9Y2L5 1435 aa34.44■■■■□ 3.1
HOMER3-206ENST00000594439 KDM4FA0A1W2PPD8 638 aa34.43■■■■□ 3.1
HOMER3-206ENST00000594439 YEATS2Q9ULM3 1422 aa34.42■■■■□ 3.1
HOMER3-206ENST00000594439 SYCP2Q9BX26 1530 aa34.41■■■■□ 3.1
HOMER3-206ENST00000594439 PLEKHH2Q8IVE3 1493 aa34.4■■■■□ 3.1
HOMER3-206ENST00000594439 KIAA1107Q9UPP5 1409 aa34.39■■■■□ 3.1
HOMER3-206ENST00000594439 HECW2Q9P2P5 1572 aa34.36■■■■□ 3.09
HOMER3-206ENST00000594439 ZNF644Q9H582 1327 aaPredicted RBP34.35■■■■□ 3.09
HOMER3-206ENST00000594439 HNRNPMP52272 730 aaKnown RBP eCLIP34.35■■■■□ 3.09
HOMER3-206ENST00000594439 MLH3Q9UHC1 1453 aa34.33■■■■□ 3.09
HOMER3-206ENST00000594439 ATP10AO60312 1499 aa34.28■■■■□ 3.08
HOMER3-206ENST00000594439 CAMSAP2Q08AD1 1489 aa34.28■■■■□ 3.08
HOMER3-206ENST00000594439 SIGLEC1Q9BZZ2 1709 aa34.28■■■■□ 3.08
HOMER3-206ENST00000594439 AEBP2Q6ZN18 517 aaPredicted RBP34.28■■■■□ 3.08
HOMER3-206ENST00000594439 MBD5Q9P267 1494 aa34.27■■■■□ 3.08
HOMER3-206ENST00000594439 KIDINS220Q9ULH0 1771 aa34.27■■■■□ 3.08
HOMER3-206ENST00000594439 MYOM3Q5VTT5 1437 aa34.27■■■■□ 3.08
HOMER3-206ENST00000594439 DIP2CQ9Y2E4 1556 aa34.26■■■■□ 3.07
HOMER3-206ENST00000594439 ABCA6Q8N139 1617 aa34.25■■■■□ 3.07
HOMER3-206ENST00000594439 C9orf84Q5VXU9 1444 aa34.23■■■■□ 3.07
HOMER3-206ENST00000594439 MYT1LQ9UL68 1186 aa34.23■■■■□ 3.07
HOMER3-206ENST00000594439 BCORL1Q5H9F3 1711 aa34.22■■■■□ 3.07
HOMER3-206ENST00000594439 ARID4BQ4LE39 1312 aaPredicted RBP34.22■■■■□ 3.07
HOMER3-206ENST00000594439 MIA2Q96PC5 1412 aa34.21■■■■□ 3.07
HOMER3-206ENST00000594439 SPAG9O60271 1321 aaKnown RBP34.2■■■■□ 3.07
HOMER3-206ENST00000594439 ADAMTSL3P82987 1691 aa34.19■■■■□ 3.06
HOMER3-206ENST00000594439 INO80Q9ULG1 1556 aaPredicted RBP34.19■■■■□ 3.06
HOMER3-206ENST00000594439 ATP7AQ04656 1500 aa34.17■■■■□ 3.06
HOMER3-206ENST00000594439 REREQ9P2R6 1566 aa34.17■■■■□ 3.06
HOMER3-206ENST00000594439 ARHGEF5Q12774 1597 aa34.15■■■■□ 3.06
HOMER3-206ENST00000594439 CCDC141Q6ZP82 1450 aa34.14■■■■□ 3.06
HOMER3-206ENST00000594439 RSPH4AQ5TD94 716 aa34.1■■■■□ 3.05
HOMER3-206ENST00000594439 MADDQ8WXG6 1647 aa34.08■■■■□ 3.05
HOMER3-206ENST00000594439 PTPN23Q9H3S7 1636 aa34.08■■■■□ 3.05
HOMER3-206ENST00000594439 RTEL1-TNFRSF6BF6WH68 1400 aa34.07■■■■□ 3.04
HOMER3-206ENST00000594439 FGD6Q6ZV73 1430 aa34.07■■■■□ 3.04
HOMER3-206ENST00000594439 AGLP35573 1532 aa34.05■■■■□ 3.04
HOMER3-206ENST00000594439 TCOF1Q13428 1488 aaKnown RBP34.02■■■■□ 3.04
HOMER3-206ENST00000594439 MLECQ14165 292 aa34.02■■■■□ 3.04
HOMER3-206ENST00000594439 ADGBQ8N7X0 1667 aa34.01■■■■□ 3.04
HOMER3-206ENST00000594439 PLXNC1O60486 1568 aa33.99■■■■□ 3.03
HOMER3-206ENST00000594439 A2MP01023 1474 aa33.99■■■■□ 3.03
HOMER3-206ENST00000594439 RIMS1Q86UR5 1692 aaKnown RBP33.98■■■■□ 3.03
HOMER3-206ENST00000594439 MAST1Q9Y2H9 1570 aa33.97■■■■□ 3.03
HOMER3-206ENST00000594439 PTPRMP28827 1452 aa33.96■■■■□ 3.03
HOMER3-206ENST00000594439 FER1L4A9Z1Z3 1794 aa33.96■■■■□ 3.03
HOMER3-206ENST00000594439 TSPY4P0CV99 314 aa33.96■■■■□ 3.03
HOMER3-206ENST00000594439 TSPY10P0CW01 314 aa33.96■■■■□ 3.03
HOMER3-206ENST00000594439 PPARGC1BQ86YN6 1023 aaKnown RBP33.94■■■■□ 3.02
HOMER3-206ENST00000594439 CROCC2H7BZ55 1655 aa33.9■■■■□ 3.02
HOMER3-206ENST00000594439 DNMT1P26358 1616 aaKnown RBP33.9■■■■□ 3.02
HOMER3-206ENST00000594439 ABCC5O15440 1437 aa33.9■■■■□ 3.02
HOMER3-206ENST00000594439 DHX29Q7Z478 1369 aaKnown RBP33.87■■■■□ 3.01
HOMER3-206ENST00000594439 DAPK1P53355 1430 aa33.87■■■■□ 3.01
HOMER3-206ENST00000594439 SHANK2Q9UPX8 1470 aa33.85■■■■□ 3.01
HOMER3-206ENST00000594439 FAM50AQ14320 339 aaKnown RBP33.79■■■■□ 3
HOMER3-206ENST00000594439 GGT6Q6P531 493 aa33.71■■■□□ 2.99
HOMER3-206ENST00000594439 CNTLNQ9NXG0 1405 aa33.7■■■□□ 2.99
HOMER3-206ENST00000594439 DUOX2Q9NRD8 1548 aa33.7■■■□□ 2.99
HOMER3-206ENST00000594439 KIF3BO15066 747 aa33.7■■■□□ 2.99
HOMER3-206ENST00000594439 PLPPR3Q6T4P5 718 aa33.69■■■□□ 2.98
HOMER3-206ENST00000594439 ESF1Q9H501 851 aaKnown RBP33.69■■■□□ 2.98
HOMER3-206ENST00000594439 KIF15Q9NS87 1388 aa33.68■■■□□ 2.98
HOMER3-206ENST00000594439 C3P01024 1663 aa33.68■■■□□ 2.98
HOMER3-206ENST00000594439 CHIC2Q9UKJ5 165 aa33.67■■■□□ 2.98
HOMER3-206ENST00000594439 EIF2AK4Q9P2K8 1649 aaKnown RBP33.67■■■□□ 2.98
HOMER3-206ENST00000594439 MROH2AA6NES4 1674 aa33.67■■■□□ 2.98
HOMER3-206ENST00000594439 CEBPAP49715 358 aaPredicted RBP33.66■■■□□ 2.98
HOMER3-206ENST00000594439 CLTCQ00610 1675 aaKnown RBP33.66■■■□□ 2.98
HOMER3-206ENST00000594439 ADGRL2O95490 1459 aa33.65■■■□□ 2.98
HOMER3-206ENST00000594439 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.65■■■□□ 2.98
HOMER3-206ENST00000594439 RRP7BPQ9NSQ0 103 aa33.65■■■□□ 2.98
HOMER3-206ENST00000594439 PPP6R1Q9UPN7 881 aa33.65■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms