RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 RALBP1Q15311 655 aa22.45■■□□□ 1.18
SMARCA4-215ENST00000590574 UNC13AQ9UPW8 1703 aa22.44■■□□□ 1.18
SMARCA4-215ENST00000590574 STAG3Q9UJ98 1225 aa22.44■■□□□ 1.18
SMARCA4-215ENST00000590574 WDR97A6NE52 1622 aa22.43■■□□□ 1.18
SMARCA4-215ENST00000590574 RCAN3Q9UKA8 241 aa22.41■■□□□ 1.18
SMARCA4-215ENST00000590574 SENP3Q9H4L4 574 aaPredicted RBP22.41■■□□□ 1.18
SMARCA4-215ENST00000590574 ZBED9Q6R2W3 1325 aa22.4■■□□□ 1.18
SMARCA4-215ENST00000590574 HNRNPMP52272 730 aaKnown RBP eCLIP22.39■■□□□ 1.185e-6■■□□□ 11.8
SMARCA4-215ENST00000590574 WASHC2AQ641Q2 1341 aa22.39■■□□□ 1.17
SMARCA4-215ENST00000590574 PPM1GO15355 546 aaPredicted RBP22.38■■□□□ 1.17
SMARCA4-215ENST00000590574 RGS3P49796 1198 aa22.38■■□□□ 1.17
SMARCA4-215ENST00000590574 HSP90AA1P07900 732 aaKnown RBP22.38■■□□□ 1.17
SMARCA4-215ENST00000590574 DEKP35659 375 aaKnown RBP22.38■■□□□ 1.17
SMARCA4-215ENST00000590574 EFCAB5A4FU69 1503 aa22.37■■□□□ 1.17
SMARCA4-215ENST00000590574 NEUROD2Q15784 382 aa22.37■■□□□ 1.17
SMARCA4-215ENST00000590574 SLC24A1O60721 1099 aa22.37■■□□□ 1.17
SMARCA4-215ENST00000590574 CCDC7Q96M83 1385 aa22.36■■□□□ 1.17
SMARCA4-215ENST00000590574 USP47Q96K76 1375 aa22.35■■□□□ 1.17
SMARCA4-215ENST00000590574 EIF5BO60841 1220 aaKnown RBP22.35■■□□□ 1.17
SMARCA4-215ENST00000590574 ZNF644Q9H582 1327 aaPredicted RBP22.34■■□□□ 1.17
SMARCA4-215ENST00000590574 CNTLNQ9NXG0 1405 aa22.34■■□□□ 1.17
SMARCA4-215ENST00000590574 ARXQ96QS3 562 aa22.34■■□□□ 1.17
SMARCA4-215ENST00000590574 ST20-MTHFSA0A0A6YYL1 179 aa22.33■■□□□ 1.17
SMARCA4-215ENST00000590574 BIVM-ERCC5R4GMW8 1640 aa22.33■■□□□ 1.16
SMARCA4-215ENST00000590574 KIF15Q9NS87 1388 aa22.32■■□□□ 1.16
SMARCA4-215ENST00000590574 BECN1Q14457 450 aa22.32■■□□□ 1.16
SMARCA4-215ENST00000590574 TNNT2P45379 298 aaPredicted RBP22.31■■□□□ 1.16
SMARCA4-215ENST00000590574 KIF7Q2M1P5 1343 aa22.31■■□□□ 1.16
SMARCA4-215ENST00000590574 CFAP53Q96M91 514 aa22.31■■□□□ 1.16
SMARCA4-215ENST00000590574 HFM1A2PYH4 1435 aa22.31■■□□□ 1.16
SMARCA4-215ENST00000590574 PCF11O94913 1555 aaKnown RBP22.29■■□□□ 1.16
SMARCA4-215ENST00000590574 NLRP13Q86W25 1043 aa22.29■■□□□ 1.16
SMARCA4-215ENST00000590574 FRAT1Q92837 279 aaPredicted RBP22.29■■□□□ 1.16
SMARCA4-215ENST00000590574 NESP48681 1621 aa22.28■■□□□ 1.16
SMARCA4-215ENST00000590574 MYBBP1AQ9BQG0 1328 aaKnown RBP22.28■■□□□ 1.16
SMARCA4-215ENST00000590574 POLA1P09884 1462 aaPredicted RBP22.28■■□□□ 1.16
SMARCA4-215ENST00000590574 JPH4Q96JJ6 628 aa22.28■■□□□ 1.16
SMARCA4-215ENST00000590574 TOPBP1Q92547 1522 aa22.27■■□□□ 1.16
SMARCA4-215ENST00000590574 TCERG1O14776 1098 aaKnown RBP22.26■■□□□ 1.15
SMARCA4-215ENST00000590574 AQRO60306 1485 aaKnown RBP eCLIP22.25■■□□□ 1.152e-7■■■■□ 24.9
SMARCA4-215ENST00000590574 IPO9Q96P70 1041 aaKnown RBP22.24■■□□□ 1.15
SMARCA4-215ENST00000590574 FANCIQ9NVI1 1328 aa22.24■■□□□ 1.15
SMARCA4-215ENST00000590574 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.24■■□□□ 1.151e-8■■□□□ 13.7
SMARCA4-215ENST00000590574 EHBP1L1Q8N3D4 1523 aa22.24■■□□□ 1.15
SMARCA4-215ENST00000590574 MAP3K1Q13233 1512 aa22.23■■□□□ 1.15
SMARCA4-215ENST00000590574 ESF1Q9H501 851 aaKnown RBP22.22■■□□□ 1.15
SMARCA4-215ENST00000590574 KANK1Q14678 1352 aa22.21■■□□□ 1.15
SMARCA4-215ENST00000590574 FTSJ3Q8IY81 847 aaKnown RBP22.21■■□□□ 1.15
SMARCA4-215ENST00000590574 PDE3BQ13370 1112 aa22.2■■□□□ 1.14
SMARCA4-215ENST00000590574 PRDM2Q13029 1718 aa22.19■■□□□ 1.14
SMARCA4-215ENST00000590574 DNMBPQ6XZF7 1577 aa22.18■■□□□ 1.14
SMARCA4-215ENST00000590574 CCDC144AA2RUR9 1427 aa22.18■■□□□ 1.14
SMARCA4-215ENST00000590574 RTN4Q9NQC3 1192 aaKnown RBP22.17■■□□□ 1.14
SMARCA4-215ENST00000590574 RSPH4AQ5TD94 716 aa22.16■■□□□ 1.14
SMARCA4-215ENST00000590574 ANP32BQ92688 251 aaKnown RBP22.16■■□□□ 1.14
SMARCA4-215ENST00000590574 CC2D2AQ9P2K1 1620 aa22.16■■□□□ 1.14
SMARCA4-215ENST00000590574 NAIPQ13075 1403 aa22.16■■□□□ 1.14
SMARCA4-215ENST00000590574 PANK3Q9H999 370 aa22.15■■□□□ 1.14
SMARCA4-215ENST00000590574 RRP1P56182 461 aaKnown RBP22.15■■□□□ 1.14
SMARCA4-215ENST00000590574 EXOC6Q8TAG9 804 aa22.15■■□□□ 1.14
SMARCA4-215ENST00000590574 NBPF8Q3BBV2 869 aa22.14■■□□□ 1.14
SMARCA4-215ENST00000590574 SUPT6HQ7KZ85 1726 aaKnown RBP22.14■■□□□ 1.13
SMARCA4-215ENST00000590574 MORC1Q86VD1 984 aa22.13■■□□□ 1.13
SMARCA4-215ENST00000590574 ABCA10Q8WWZ4 1543 aa22.13■■□□□ 1.13
SMARCA4-215ENST00000590574 EFCAB2Q5VUJ9 269 aa22.13■■□□□ 1.13
SMARCA4-215ENST00000590574 MYH16Q9H6N6 1097 aa22.13■■□□□ 1.13
SMARCA4-215ENST00000590574 MAPK8IP3Q9UPT6 1336 aa22.12■■□□□ 1.13
SMARCA4-215ENST00000590574 MAPKBP1O60336 1514 aa22.11■■□□□ 1.13
SMARCA4-215ENST00000590574 CCDC184Q52MB2 194 aa22.11■■□□□ 1.13
SMARCA4-215ENST00000590574 PLIN1O60240 522 aa22.1■■□□□ 1.13
SMARCA4-215ENST00000590574 MIA2Q96PC5 1412 aa22.09■■□□□ 1.13
SMARCA4-215ENST00000590574 GOLGA2Q08379 1002 aa22.09■■□□□ 1.13
SMARCA4-215ENST00000590574 CCDC146Q8IYE0 955 aa22.09■■□□□ 1.13
SMARCA4-215ENST00000590574 ARID4BQ4LE39 1312 aaPredicted RBP22.09■■□□□ 1.13
SMARCA4-215ENST00000590574 U2SURPO15042 1029 aaKnown RBP22.08■■□□□ 1.13
SMARCA4-215ENST00000590574 ANKRD50Q9ULJ7 1429 aa22.08■■□□□ 1.12
SMARCA4-215ENST00000590574 HECW1Q76N89 1606 aa22.07■■□□□ 1.12
SMARCA4-215ENST00000590574 GRIN2BQ13224 1484 aa22.06■■□□□ 1.12
SMARCA4-215ENST00000590574 EIF3AQ14152 1382 aaKnown RBP22.04■■□□□ 1.12
SMARCA4-215ENST00000590574 PDE4AP27815 886 aa22.04■■□□□ 1.12
SMARCA4-215ENST00000590574 POGKQ9P215 609 aa22.03■■□□□ 1.12
SMARCA4-215ENST00000590574 CUL7Q14999 1698 aa22.02■■□□□ 1.12
SMARCA4-215ENST00000590574 PLPPR3Q6T4P5 718 aa22.02■■□□□ 1.12
SMARCA4-215ENST00000590574 PTPRGP23470 1445 aa22.02■■□□□ 1.12
SMARCA4-215ENST00000590574 DAPK1P53355 1430 aa22.02■■□□□ 1.11
SMARCA4-215ENST00000590574 SAFB2Q14151 953 aaKnown RBP eCLIP22.01■■□□□ 1.112e-6■□□□□ 10.3
SMARCA4-215ENST00000590574 CRBNQ96SW2 442 aa22.01■■□□□ 1.11
SMARCA4-215ENST00000590574 CDK13Q14004 1512 aaKnown RBP22.01■■□□□ 1.11
SMARCA4-215ENST00000590574 PTPN23Q9H3S7 1636 aa22.01■■□□□ 1.11
SMARCA4-215ENST00000590574 KIF3BO15066 747 aa22■■□□□ 1.11
SMARCA4-215ENST00000590574 SPAG9O60271 1321 aaKnown RBP22■■□□□ 1.11
SMARCA4-215ENST00000590574 EPRSP07814 1512 aaKnown RBP21.99■■□□□ 1.11
SMARCA4-215ENST00000590574 MS4A1P11836 297 aa21.99■■□□□ 1.11
SMARCA4-215ENST00000590574 GGT6Q6P531 493 aa21.98■■□□□ 1.11
SMARCA4-215ENST00000590574 KIAA1107Q9UPP5 1409 aa21.96■■□□□ 1.11
SMARCA4-215ENST00000590574 AKNAQ7Z591 1439 aa21.96■■□□□ 1.11
SMARCA4-215ENST00000590574 SRPK2P78362 688 aaKnown RBP21.96■■□□□ 1.11
SMARCA4-215ENST00000590574 PRG4Q92954 1404 aaPredicted RBP21.96■■□□□ 1.11
SMARCA4-215ENST00000590574 C11orf95C9JLR9 678 aaPredicted RBP21.96■■□□□ 1.11
SMARCA4-215ENST00000590574 BRD4O60885 1362 aaPredicted RBP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms