RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 ARHGAP5Q13017 1502 aa31.59■■■□□ 2.65
ATG4D-208ENST00000588667 AKNAQ7Z591 1439 aa31.57■■■□□ 2.64
ATG4D-208ENST00000588667 EFCAB2Q5VUJ9 269 aa31.55■■■□□ 2.64
ATG4D-208ENST00000588667 GPATCH8Q9UKJ3 1502 aaKnown RBP31.55■■■□□ 2.64
ATG4D-208ENST00000588667 CCNB3Q8WWL7 1395 aa31.54■■■□□ 2.64
ATG4D-208ENST00000588667 NCOA2Q15596 1464 aa31.54■■■□□ 2.64
ATG4D-208ENST00000588667 KANK4Q5T7N3 995 aaPredicted RBP31.53■■■□□ 2.64
ATG4D-208ENST00000588667 ITSN2Q9NZM3 1697 aa31.52■■■□□ 2.64
ATG4D-208ENST00000588667 ADGRL1O94910 1474 aa31.5■■■□□ 2.63
ATG4D-208ENST00000588667 DENND4BO75064 1496 aaPredicted RBP31.46■■■□□ 2.63
ATG4D-208ENST00000588667 RICTORQ6R327 1708 aa31.46■■■□□ 2.63
ATG4D-208ENST00000588667 FRMPD1Q5SYB0 1578 aa31.45■■■□□ 2.63
ATG4D-208ENST00000588667 SCAPERQ9BY12 1400 aa31.43■■■□□ 2.62
ATG4D-208ENST00000588667 ABCC1P33527 1531 aa31.42■■■□□ 2.62
ATG4D-208ENST00000588667 CFDP1Q9UEE9 299 aaPredicted RBP31.41■■■□□ 2.62
ATG4D-208ENST00000588667 SAMD9LQ8IVG5 1584 aa31.4■■■□□ 2.62
ATG4D-208ENST00000588667 RAPGEF3O95398 923 aa31.4■■■□□ 2.62
ATG4D-208ENST00000588667 POGZQ7Z3K3 1410 aa31.39■■■□□ 2.62
ATG4D-208ENST00000588667 ZMYM4Q5VZL5 1548 aa31.34■■■□□ 2.61
ATG4D-208ENST00000588667 PLEKHH2Q8IVE3 1493 aa31.34■■■□□ 2.61
ATG4D-208ENST00000588667 ZNF777Q9ULD5 760 aaPredicted RBP31.34■■■□□ 2.61
ATG4D-208ENST00000588667 ZNF518AQ6AHZ1 1483 aa31.33■■■□□ 2.61
ATG4D-208ENST00000588667 ARHGEF12Q9NZN5 1544 aa31.32■■■□□ 2.6
ATG4D-208ENST00000588667 SYCP2Q9BX26 1530 aa31.31■■■□□ 2.6
ATG4D-208ENST00000588667 MYOM3Q5VTT5 1437 aa31.31■■■□□ 2.6
ATG4D-208ENST00000588667 KIAA1107Q9UPP5 1409 aa31.3■■■□□ 2.6
ATG4D-208ENST00000588667 KDM5CP41229 1560 aa31.29■■■□□ 2.6
ATG4D-208ENST00000588667 MIA2Q96PC5 1412 aa31.25■■■□□ 2.59
ATG4D-208ENST00000588667 TRAPPC8Q9Y2L5 1435 aa31.25■■■□□ 2.59
ATG4D-208ENST00000588667 CAMSAP2Q08AD1 1489 aa31.25■■■□□ 2.59
ATG4D-208ENST00000588667 MAGI2Q86UL8 1455 aa31.25■■■□□ 2.59
ATG4D-208ENST00000588667 ARHGEF40Q8TER5 1519 aa31.24■■■□□ 2.59
ATG4D-208ENST00000588667 ZNF644Q9H582 1327 aaPredicted RBP31.23■■■□□ 2.59
ATG4D-208ENST00000588667 AFAP1Q8N556 730 aa31.21■■■□□ 2.59
ATG4D-208ENST00000588667 HECW2Q9P2P5 1572 aa31.21■■■□□ 2.59
ATG4D-208ENST00000588667 ZFYVE16Q7Z3T8 1539 aa31.21■■■□□ 2.59
ATG4D-208ENST00000588667 HNRNPMP52272 730 aaKnown RBP eCLIP31.19■■■□□ 2.58
ATG4D-208ENST00000588667 MBD5Q9P267 1494 aa31.18■■■□□ 2.58
ATG4D-208ENST00000588667 MLH3Q9UHC1 1453 aa31.16■■■□□ 2.58
ATG4D-208ENST00000588667 FGD6Q6ZV73 1430 aa31.15■■■□□ 2.58
ATG4D-208ENST00000588667 YEATS2Q9ULM3 1422 aa31.15■■■□□ 2.58
ATG4D-208ENST00000588667 PTPN23Q9H3S7 1636 aa31.14■■■□□ 2.58
ATG4D-208ENST00000588667 ARHGEF5Q12774 1597 aa31.13■■■□□ 2.57
ATG4D-208ENST00000588667 KIDINS220Q9ULH0 1771 aa31.11■■■□□ 2.57
ATG4D-208ENST00000588667 CCDC141Q6ZP82 1450 aa31.11■■■□□ 2.57
ATG4D-208ENST00000588667 INO80Q9ULG1 1556 aaPredicted RBP31.09■■■□□ 2.57
ATG4D-208ENST00000588667 TCOF1Q13428 1488 aaKnown RBP31.08■■■□□ 2.57
ATG4D-208ENST00000588667 RSPH4AQ5TD94 716 aa31.08■■■□□ 2.57
ATG4D-208ENST00000588667 PPARGC1BQ86YN6 1023 aaKnown RBP31.08■■■□□ 2.57
ATG4D-208ENST00000588667 DIP2CQ9Y2E4 1556 aa31.07■■■□□ 2.56
ATG4D-208ENST00000588667 ABCA6Q8N139 1617 aa31.07■■■□□ 2.56
ATG4D-208ENST00000588667 SPAG9O60271 1321 aaKnown RBP31.07■■■□□ 2.56
ATG4D-208ENST00000588667 ATP7AQ04656 1500 aa31.07■■■□□ 2.56
ATG4D-208ENST00000588667 MYT1LQ9UL68 1186 aa31.06■■■□□ 2.56
ATG4D-208ENST00000588667 ATP10AO60312 1499 aa31.05■■■□□ 2.56
ATG4D-208ENST00000588667 C9orf84Q5VXU9 1444 aa31.02■■■□□ 2.56
ATG4D-208ENST00000588667 REREQ9P2R6 1566 aa31■■■□□ 2.55
ATG4D-208ENST00000588667 RTEL1-TNFRSF6BF6WH68 1400 aa31■■■□□ 2.55
ATG4D-208ENST00000588667 SIGLEC1Q9BZZ2 1709 aa30.99■■■□□ 2.55
ATG4D-208ENST00000588667 CROCC2H7BZ55 1655 aa30.97■■■□□ 2.55
ATG4D-208ENST00000588667 DNMT1P26358 1616 aaKnown RBP30.97■■■□□ 2.55
ATG4D-208ENST00000588667 MAST1Q9Y2H9 1570 aa30.96■■■□□ 2.55
ATG4D-208ENST00000588667 TSPY4P0CV99 314 aa30.94■■■□□ 2.54
ATG4D-208ENST00000588667 TSPY10P0CW01 314 aa30.94■■■□□ 2.54
ATG4D-208ENST00000588667 ADGBQ8N7X0 1667 aa30.93■■■□□ 2.54
ATG4D-208ENST00000588667 ARID4BQ4LE39 1312 aaPredicted RBP30.92■■■□□ 2.54
ATG4D-208ENST00000588667 SHANK2Q9UPX8 1470 aa30.91■■■□□ 2.54
ATG4D-208ENST00000588667 BCORL1Q5H9F3 1711 aa30.91■■■□□ 2.54
ATG4D-208ENST00000588667 ABCC5O15440 1437 aa30.91■■■□□ 2.54
ATG4D-208ENST00000588667 DAPK1P53355 1430 aa30.9■■■□□ 2.54
ATG4D-208ENST00000588667 FAM50AQ14320 339 aaKnown RBP30.9■■■□□ 2.54
ATG4D-208ENST00000588667 AGLP35573 1532 aa30.88■■■□□ 2.53
ATG4D-208ENST00000588667 PLXNC1O60486 1568 aa30.88■■■□□ 2.53
ATG4D-208ENST00000588667 KDM4FA0A1W2PPD8 638 aa30.87■■■□□ 2.53
ATG4D-208ENST00000588667 A2MP01023 1474 aa30.87■■■□□ 2.53
ATG4D-208ENST00000588667 ADAMTSL3P82987 1691 aa30.85■■■□□ 2.53
ATG4D-208ENST00000588667 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.83■■■□□ 2.53
ATG4D-208ENST00000588667 RRBP1Q9P2E9 1410 aaKnown RBP30.83■■■□□ 2.53
ATG4D-208ENST00000588667 DHX29Q7Z478 1369 aaKnown RBP30.78■■■□□ 2.52
ATG4D-208ENST00000588667 MADDQ8WXG6 1647 aa30.76■■■□□ 2.52
ATG4D-208ENST00000588667 MLECQ14165 292 aa30.73■■■□□ 2.51
ATG4D-208ENST00000588667 FER1L4A9Z1Z3 1794 aa30.73■■■□□ 2.51
ATG4D-208ENST00000588667 ADGRL2O95490 1459 aa30.72■■■□□ 2.51
ATG4D-208ENST00000588667 DUOX2Q9NRD8 1548 aa30.71■■■□□ 2.51
ATG4D-208ENST00000588667 ANKRD30AQ9BXX3 1397 aa30.71■■■□□ 2.51
ATG4D-208ENST00000588667 KIF15Q9NS87 1388 aa30.7■■■□□ 2.51
ATG4D-208ENST00000588667 RIMS1Q86UR5 1692 aaKnown RBP30.69■■■□□ 2.5
ATG4D-208ENST00000588667 CHIC2Q9UKJ5 165 aa30.69■■■□□ 2.5
ATG4D-208ENST00000588667 NCOA1Q15788 1441 aa30.69■■■□□ 2.5
ATG4D-208ENST00000588667 PTPRKQ15262 1439 aa30.68■■■□□ 2.5
ATG4D-208ENST00000588667 EIF2AK4Q9P2K8 1649 aaKnown RBP30.68■■■□□ 2.5
ATG4D-208ENST00000588667 RRP7BPQ9NSQ0 103 aa30.64■■■□□ 2.5
ATG4D-208ENST00000588667 ERBINQ96RT1 1412 aa30.63■■■□□ 2.49
ATG4D-208ENST00000588667 PTPRMP28827 1452 aa30.62■■■□□ 2.49
ATG4D-208ENST00000588667 AEBP2Q6ZN18 517 aaPredicted RBP30.62■■■□□ 2.49
ATG4D-208ENST00000588667 ROCK1Q13464 1354 aa30.61■■■□□ 2.49
ATG4D-208ENST00000588667 KIF3BO15066 747 aa30.61■■■□□ 2.49
ATG4D-208ENST00000588667 RNF17Q9BXT8 1623 aaKnown RBP30.6■■■□□ 2.49
ATG4D-208ENST00000588667 ITGAEP38570 1179 aa30.6■■■□□ 2.49
ATG4D-208ENST00000588667 GGT6Q6P531 493 aa30.57■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 159.5 ms