RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	ABCA10	Q8WWZ4	1543 aa		13.04	□□□□□ -0.32
PPP4R1-222	ENST00000582594	NCOA1	Q15788	1441 aa		13.03	□□□□□ -0.32
PPP4R1-222	ENST00000582594	MYT1L	Q9UL68	1186 aa		13.02	□□□□□ -0.33
PPP4R1-222	ENST00000582594	KIF7	Q2M1P5	1343 aa		13.02	□□□□□ -0.33
PPP4R1-222	ENST00000582594	IFT140	Q96RY7	1462 aa		13.02	□□□□□ -0.33
PPP4R1-222	ENST00000582594	GRIN2B	Q13224	1484 aa		13.01	□□□□□ -0.33
PPP4R1-222	ENST00000582594	TARBP1	Q13395	1621 aa	Known RBP	13.01	□□□□□ -0.33
PPP4R1-222	ENST00000582594	CUL7	Q14999	1698 aa		13.01	□□□□□ -0.33
PPP4R1-222	ENST00000582594	MAGI3	Q5TCQ9	1506 aa		13.01	□□□□□ -0.33
PPP4R1-222	ENST00000582594	TOPBP1	Q92547	1522 aa		13.01	□□□□□ -0.33
PPP4R1-222	ENST00000582594	HECW1	Q76N89	1606 aa		13.01	□□□□□ -0.33
PPP4R1-222	ENST00000582594	CCDC136	Q96JN2	1154 aa		13	□□□□□ -0.33
PPP4R1-222	ENST00000582594	EHBP1L1	Q8N3D4	1523 aa		13	□□□□□ -0.33
PPP4R1-222	ENST00000582594	UGGT2	Q9NYU1	1516 aa		13	□□□□□ -0.33
PPP4R1-222	ENST00000582594	TDRD9	Q8NDG6	1382 aa	Known RBP	13	□□□□□ -0.33
PPP4R1-222	ENST00000582594	GCC2	Q8IWJ2	1684 aa		12.98	□□□□□ -0.33
PPP4R1-222	ENST00000582594	SAMD9	Q5K651	1589 aa		12.97	□□□□□ -0.33
PPP4R1-222	ENST00000582594	URB2	Q14146	1524 aa	Known RBP	12.97	□□□□□ -0.33
PPP4R1-222	ENST00000582594	ZNF326	Q5BKZ1	582 aa	Known RBP	12.96	□□□□□ -0.33
PPP4R1-222	ENST00000582594	ANP32A	P39687	249 aa	Known RBP	12.96	□□□□□ -0.33
PPP4R1-222	ENST00000582594	NUDC	Q9Y266	331 aa		12.96	□□□□□ -0.33
PPP4R1-222	ENST00000582594	SMG6	Q86US8	1419 aa	Known RBP	12.95	□□□□□ -0.34
PPP4R1-222	ENST00000582594	IPO9	Q96P70	1041 aa	Known RBP	12.94	□□□□□ -0.34
PPP4R1-222	ENST00000582594	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.93	□□□□□ -0.34
PPP4R1-222	ENST00000582594	TCOF1	Q13428	1488 aa	Known RBP	12.93	□□□□□ -0.34
PPP4R1-222	ENST00000582594	ARHGEF11	O15085	1522 aa		12.93	□□□□□ -0.34
PPP4R1-222	ENST00000582594	NPM2	Q86SE8	214 aa	Known RBP	12.93	□□□□□ -0.34
PPP4R1-222	ENST00000582594	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.93	□□□□□ -0.34
PPP4R1-222	ENST00000582594	ANKRD30B	Q9BXX2	1392 aa		12.93	□□□□□ -0.34
PPP4R1-222	ENST00000582594	RTL5	Q5HYW3	569 aa	Predicted RBP	12.92	□□□□□ -0.34
PPP4R1-222	ENST00000582594	RPRD2	Q5VT52	1461 aa	Known RBP	12.91	□□□□□ -0.34
PPP4R1-222	ENST00000582594	SPATA31E1	Q6ZUB1	1445 aa		12.91	□□□□□ -0.34
PPP4R1-222	ENST00000582594	TEX14	Q8IWB6	1497 aa		12.91	□□□□□ -0.34
PPP4R1-222	ENST00000582594	CDK13	Q14004	1512 aa	Known RBP	12.91	□□□□□ -0.34
PPP4R1-222	ENST00000582594	DHX29	Q7Z478	1369 aa	Known RBP	12.9	□□□□□ -0.35
PPP4R1-222	ENST00000582594	ZNF644	Q9H582	1327 aa	Predicted RBP	12.9	□□□□□ -0.35
PPP4R1-222	ENST00000582594	GAPVD1	Q14C86	1478 aa		12.88	□□□□□ -0.35
PPP4R1-222	ENST00000582594	SALL2	Q9Y467	1007 aa	Predicted RBP	12.88	□□□□□ -0.35
PPP4R1-222	ENST00000582594	RNF123	Q5XPI4	1314 aa		12.88	□□□□□ -0.35
PPP4R1-222	ENST00000582594	POLR1A	O95602	1720 aa	Predicted RBP	12.87	□□□□□ -0.35
PPP4R1-222	ENST00000582594	TMC1	Q8TDI8	760 aa		12.87	□□□□□ -0.35
PPP4R1-222	ENST00000582594	EPRS	P07814	1512 aa	Known RBP	12.87	□□□□□ -0.35
PPP4R1-222	ENST00000582594	EIF4G3	O43432	1585 aa	Known RBP	12.86	□□□□□ -0.35
PPP4R1-222	ENST00000582594	ABCA5	Q8WWZ7	1642 aa		12.86	□□□□□ -0.35
PPP4R1-222	ENST00000582594	BCORL1	Q5H9F3	1711 aa		12.85	□□□□□ -0.35
PPP4R1-222	ENST00000582594	LAS1L	Q9Y4W2	734 aa	Known RBP	12.85	□□□□□ -0.35
PPP4R1-222	ENST00000582594	USP47	Q96K76	1375 aa		12.85	□□□□□ -0.35
PPP4R1-222	ENST00000582594	DAPK1	P53355	1430 aa		12.85	□□□□□ -0.35
PPP4R1-222	ENST00000582594	EXOC6	Q8TAG9	804 aa		12.84	□□□□□ -0.35
PPP4R1-222	ENST00000582594	PNISR	Q8TF01	805 aa	Known RBP	12.84	□□□□□ -0.35
PPP4R1-222	ENST00000582594	MIA2	Q96PC5	1412 aa		12.84	□□□□□ -0.35
PPP4R1-222	ENST00000582594	RTN4	Q9NQC3	1192 aa	Known RBP	12.84	□□□□□ -0.35
PPP4R1-222	ENST00000582594	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.83	□□□□□ -0.36
PPP4R1-222	ENST00000582594	ABCC5	O15440	1437 aa		12.83	□□□□□ -0.36
PPP4R1-222	ENST00000582594	CLASP1	Q7Z460	1538 aa		12.82	□□□□□ -0.36
PPP4R1-222	ENST00000582594	IL27	Q8NEV9	243 aa		12.82	□□□□□ -0.36
PPP4R1-222	ENST00000582594	RRP1	P56182	461 aa	Known RBP	12.8	□□□□□ -0.36
PPP4R1-222	ENST00000582594	PBRM1	Q86U86	1689 aa		12.79	□□□□□ -0.36
PPP4R1-222	ENST00000582594	ROCK1	Q13464	1354 aa		12.79	□□□□□ -0.36
PPP4R1-222	ENST00000582594	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.78	□□□□□ -0.36
PPP4R1-222	ENST00000582594	NEFM	P07197	916 aa		12.78	□□□□□ -0.36
PPP4R1-222	ENST00000582594	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.78	□□□□□ -0.36
PPP4R1-222	ENST00000582594	PZP	P20742	1482 aa		12.78	□□□□□ -0.36
PPP4R1-222	ENST00000582594	PDE4A	P27815	886 aa		12.78	□□□□□ -0.36
PPP4R1-222	ENST00000582594	PKD2	Q13563	968 aa		12.78	□□□□□ -0.36
PPP4R1-222	ENST00000582594	SKAP1	Q86WV1	359 aa		12.78	□□□□□ -0.36
PPP4R1-222	ENST00000582594	KDM2A	Q9Y2K7	1162 aa		12.78	□□□□□ -0.36
PPP4R1-222	ENST00000582594	PRKCSH	P14314	528 aa	Predicted RBP	12.77	□□□□□ -0.36
PPP4R1-222	ENST00000582594	DNMT1	P26358	1616 aa	Known RBP	12.77	□□□□□ -0.36
PPP4R1-222	ENST00000582594	CARD11	Q9BXL7	1154 aa		12.77	□□□□□ -0.37
PPP4R1-222	ENST00000582594	RCAN3	Q9UKA8	241 aa		12.76	□□□□□ -0.37
PPP4R1-222	ENST00000582594	SHROOM2	Q13796	1616 aa		12.76	□□□□□ -0.37
PPP4R1-222	ENST00000582594	TCERG1	O14776	1098 aa	Known RBP	12.75	□□□□□ -0.37
PPP4R1-222	ENST00000582594	KDM5C	P41229	1560 aa		12.75	□□□□□ -0.37
PPP4R1-222	ENST00000582594	IQGAP2	Q13576	1575 aa		12.75	□□□□□ -0.37
PPP4R1-222	ENST00000582594	MBD5	Q9P267	1494 aa		12.75	□□□□□ -0.37
PPP4R1-222	ENST00000582594	ST20-MTHFS	A0A0A6YYL1	179 aa		12.74	□□□□□ -0.37
PPP4R1-222	ENST00000582594	PLIN1	O60240	522 aa		12.74	□□□□□ -0.37
PPP4R1-222	ENST00000582594	KIF15	Q9NS87	1388 aa		12.74	□□□□□ -0.37
PPP4R1-222	ENST00000582594	CHD1	O14646	1710 aa		12.74	□□□□□ -0.37
PPP4R1-222	ENST00000582594	CDCA7L	Q96GN5	454 aa		12.73	□□□□□ -0.37
PPP4R1-222	ENST00000582594	KIAA1107	Q9UPP5	1409 aa		12.73	□□□□□ -0.37
PPP4R1-222	ENST00000582594	MYBBP1A	Q9BQG0	1328 aa	Known RBP	12.73	□□□□□ -0.37
PPP4R1-222	ENST00000582594	BACH2	Q9BYV9	841 aa		12.73	□□□□□ -0.37
PPP4R1-222	ENST00000582594	LRPPRC	P42704	1394 aa	Known RBP	12.72	□□□□□ -0.37
PPP4R1-222	ENST00000582594	KIF14	Q15058	1648 aa		12.72	□□□□□ -0.37
PPP4R1-222	ENST00000582594	CFDP1	Q9UEE9	299 aa	Predicted RBP	12.72	□□□□□ -0.37
PPP4R1-222	ENST00000582594	ROCK2	O75116	1388 aa	Known RBP	12.71	□□□□□ -0.38
PPP4R1-222	ENST00000582594	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.7	□□□□□ -0.38
PPP4R1-222	ENST00000582594	BRD4	O60885	1362 aa	Predicted RBP	12.7	□□□□□ -0.38
PPP4R1-222	ENST00000582594	RALBP1	Q15311	655 aa		12.69	□□□□□ -0.38
PPP4R1-222	ENST00000582594	DCAF11	Q8TEB1	546 aa		12.69	□□□□□ -0.38
PPP4R1-222	ENST00000582594	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.69	□□□□□ -0.38
PPP4R1-222	ENST00000582594	PRG4	Q92954	1404 aa	Predicted RBP	12.68	□□□□□ -0.38
PPP4R1-222	ENST00000582594	CAMSAP2	Q08AD1	1489 aa		12.68	□□□□□ -0.38
PPP4R1-222	ENST00000582594	SLC4A3	P48751	1232 aa		12.68	□□□□□ -0.38
PPP4R1-222	ENST00000582594	RIMBP3C	A6NJZ7	1639 aa		12.68	□□□□□ -0.38
PPP4R1-222	ENST00000582594	RIMBP3B	A6NNM3	1639 aa		12.68	□□□□□ -0.38
PPP4R1-222	ENST00000582594	RIMBP3	Q9UFD9	1639 aa		12.68	□□□□□ -0.38
PPP4R1-222	ENST00000582594	CRBN	Q96SW2	442 aa		12.68	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 60 ms