RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 PTPN23Q9H3S7 1636 aa16.38■□□□□ 0.21
SS18-213ENST00000579640 TCOF1Q13428 1488 aaKnown RBP16.38■□□□□ 0.21
SS18-213ENST00000579640 ARHGAP5Q13017 1502 aa16.37■□□□□ 0.21
SS18-213ENST00000579640 CD109Q6YHK3 1445 aa16.36■□□□□ 0.21
SS18-213ENST00000579640 MAP3K4Q9Y6R4 1608 aa16.36■□□□□ 0.21
SS18-213ENST00000579640 FAM69CQ0P6D2 419 aa16.35■□□□□ 0.21
SS18-213ENST00000579640 EFCAB2Q5VUJ9 269 aa16.34■□□□□ 0.21
SS18-213ENST00000579640 CAMSAP2Q08AD1 1489 aa16.34■□□□□ 0.21
SS18-213ENST00000579640 KIF13AQ9H1H9 1805 aa16.33■□□□□ 0.2
SS18-213ENST00000579640 FAM50AQ14320 339 aaKnown RBP16.33■□□□□ 0.2
SS18-213ENST00000579640 PLEKHH2Q8IVE3 1493 aa16.32■□□□□ 0.2
SS18-213ENST00000579640 CFAP74Q9C0B2 1584 aa16.32■□□□□ 0.2
SS18-213ENST00000579640 ZNF777Q9ULD5 760 aaPredicted RBP16.31■□□□□ 0.2
SS18-213ENST00000579640 FANCAO15360 1455 aa16.31■□□□□ 0.2
SS18-213ENST00000579640 SAMD9LQ8IVG5 1584 aa16.31■□□□□ 0.2
SS18-213ENST00000579640 KIAA1107Q9UPP5 1409 aa16.29■□□□□ 0.2
SS18-213ENST00000579640 ZNF644Q9H582 1327 aaPredicted RBP16.28■□□□□ 0.2
SS18-213ENST00000579640 NEO1Q92859 1461 aa16.28■□□□□ 0.2
SS18-213ENST00000579640 TEX14Q8IWB6 1497 aa16.28■□□□□ 0.2
SS18-213ENST00000579640 ABCC1P33527 1531 aa16.27■□□□□ 0.19
SS18-213ENST00000579640 ARHGEF5Q12774 1597 aa16.27■□□□□ 0.19
SS18-213ENST00000579640 RSPH4AQ5TD94 716 aa16.26■□□□□ 0.19
SS18-213ENST00000579640 DNMT1P26358 1616 aaKnown RBP16.26■□□□□ 0.19
SS18-213ENST00000579640 PCGF6Q9BYE7 350 aa16.26■□□□□ 0.19
SS18-213ENST00000579640 AKNAQ7Z591 1439 aa16.25■□□□□ 0.19
SS18-213ENST00000579640 PPRC1Q5VV67 1664 aaKnown RBP16.25■□□□□ 0.19
SS18-213ENST00000579640 SYCP2Q9BX26 1530 aa16.24■□□□□ 0.19
SS18-213ENST00000579640 DAPK1P53355 1430 aa16.24■□□□□ 0.19
SS18-213ENST00000579640 ADGRL1O94910 1474 aa16.24■□□□□ 0.19
SS18-213ENST00000579640 MBD5Q9P267 1494 aa16.24■□□□□ 0.19
SS18-213ENST00000579640 TSPOAP1O95153 1857 aa16.23■□□□□ 0.19
SS18-213ENST00000579640 ABCC5O15440 1437 aa16.22■□□□□ 0.19
SS18-213ENST00000579640 CCDC141Q6ZP82 1450 aa16.22■□□□□ 0.19
SS18-213ENST00000579640 CROCC2H7BZ55 1655 aa16.21■□□□□ 0.19
SS18-213ENST00000579640 ARHGEF12Q9NZN5 1544 aa16.21■□□□□ 0.19
SS18-213ENST00000579640 SHANK2Q9UPX8 1470 aa16.21■□□□□ 0.19
SS18-213ENST00000579640 TRHP20396 242 aaPredicted RBP16.21■□□□□ 0.19
SS18-213ENST00000579640 ITGAEP38570 1179 aa16.21■□□□□ 0.19
SS18-213ENST00000579640 HNRNPMP52272 730 aaKnown RBP eCLIP16.21■□□□□ 0.19
SS18-213ENST00000579640 SCAPERQ9BY12 1400 aa16.2■□□□□ 0.18
SS18-213ENST00000579640 PTPRKQ15262 1439 aa16.18■□□□□ 0.18
SS18-213ENST00000579640 TSPY4P0CV99 314 aa16.18■□□□□ 0.18
SS18-213ENST00000579640 TSPY10P0CW01 314 aa16.18■□□□□ 0.18
SS18-213ENST00000579640 MAST1Q9Y2H9 1570 aa16.17■□□□□ 0.18
SS18-213ENST00000579640 TRAPPC8Q9Y2L5 1435 aa16.16■□□□□ 0.18
SS18-213ENST00000579640 DENND4BO75064 1496 aaPredicted RBP16.16■□□□□ 0.18
SS18-213ENST00000579640 ZNF518AQ6AHZ1 1483 aa16.16■□□□□ 0.18
SS18-213ENST00000579640 C9orf84Q5VXU9 1444 aa16.16■□□□□ 0.18
SS18-213ENST00000579640 POGZQ7Z3K3 1410 aa16.16■□□□□ 0.18
SS18-213ENST00000579640 ROCK1Q13464 1354 aa16.16■□□□□ 0.18
SS18-213ENST00000579640 ADGBQ8N7X0 1667 aa16.16■□□□□ 0.18
SS18-213ENST00000579640 ADGRL2O95490 1459 aa16.15■□□□□ 0.18
SS18-213ENST00000579640 RTEL1-TNFRSF6BF6WH68 1400 aa16.13■□□□□ 0.17
SS18-213ENST00000579640 ANKRD30AQ9BXX3 1397 aa16.12■□□□□ 0.17
SS18-213ENST00000579640 KDM5CP41229 1560 aa16.12■□□□□ 0.17
SS18-213ENST00000579640 AFAP1Q8N556 730 aa16.12■□□□□ 0.17
SS18-213ENST00000579640 CHIC2Q9UKJ5 165 aa16.12■□□□□ 0.17
SS18-213ENST00000579640 HFM1A2PYH4 1435 aa16.11■□□□□ 0.17
SS18-213ENST00000579640 SPAG9O60271 1321 aaKnown RBP16.11■□□□□ 0.17
SS18-213ENST00000579640 RICTORQ6R327 1708 aa16.11■□□□□ 0.17
SS18-213ENST00000579640 NCOA1Q15788 1441 aa16.1■□□□□ 0.17
SS18-213ENST00000579640 PLXNC1O60486 1568 aa16.1■□□□□ 0.17
SS18-213ENST00000579640 INO80Q9ULG1 1556 aaPredicted RBP16.1■□□□□ 0.17
SS18-213ENST00000579640 GCC2Q8IWJ2 1684 aa16.09■□□□□ 0.17
SS18-213ENST00000579640 ZFYVE16Q7Z3T8 1539 aa16.09■□□□□ 0.17
SS18-213ENST00000579640 MLH3Q9UHC1 1453 aa16.09■□□□□ 0.17
SS18-213ENST00000579640 ATP7AQ04656 1500 aa16.09■□□□□ 0.17
SS18-213ENST00000579640 SETD5Q9C0A6 1442 aa16.08■□□□□ 0.17
SS18-213ENST00000579640 HECW2Q9P2P5 1572 aa16.08■□□□□ 0.16
SS18-213ENST00000579640 NAIPQ13075 1403 aa16.08■□□□□ 0.16
SS18-213ENST00000579640 ZMYM4Q5VZL5 1548 aa16.07■□□□□ 0.16
SS18-213ENST00000579640 FRMPD1Q5SYB0 1578 aa16.07■□□□□ 0.16
SS18-213ENST00000579640 RAPGEF3O95398 923 aa16.07■□□□□ 0.16
SS18-213ENST00000579640 RRP7BPQ9NSQ0 103 aa16.07■□□□□ 0.16
SS18-213ENST00000579640 KIF15Q9NS87 1388 aa16.05■□□□□ 0.16
SS18-213ENST00000579640 MAGI2Q86UL8 1455 aa16.05■□□□□ 0.16
SS18-213ENST00000579640 KIDINS220Q9ULH0 1771 aa16.05■□□□□ 0.16
SS18-213ENST00000579640 HRCP23327 699 aa16.04■□□□□ 0.16
SS18-213ENST00000579640 COL17A1Q9UMD9 1497 aaPredicted RBP16.04■□□□□ 0.16
SS18-213ENST00000579640 ACIN1Q9UKV3 1341 aaKnown RBP16.03■□□□□ 0.16
SS18-213ENST00000579640 MYT1LQ9UL68 1186 aa16.03■□□□□ 0.16
SS18-213ENST00000579640 DUOX2Q9NRD8 1548 aa16.03■□□□□ 0.16
SS18-213ENST00000579640 KDM6BO15054 1643 aa16.02■□□□□ 0.16
SS18-213ENST00000579640 RAB3GAP2Q9H2M9 1393 aa16.02■□□□□ 0.16
SS18-213ENST00000579640 ANKRD50Q9ULJ7 1429 aa16.01■□□□□ 0.15
SS18-213ENST00000579640 ERBINQ96RT1 1412 aa16■□□□□ 0.15
SS18-213ENST00000579640 ABCA6Q8N139 1617 aa15.98■□□□□ 0.15
SS18-213ENST00000579640 DIP2CQ9Y2E4 1556 aa15.98■□□□□ 0.15
SS18-213ENST00000579640 DHX29Q7Z478 1369 aaKnown RBP15.98■□□□□ 0.15
SS18-213ENST00000579640 AEBP2Q6ZN18 517 aaPredicted RBP15.97■□□□□ 0.15
SS18-213ENST00000579640 A2MP01023 1474 aa15.97■□□□□ 0.15
SS18-213ENST00000579640 YEATS2Q9ULM3 1422 aa15.96■□□□□ 0.15
SS18-213ENST00000579640 ARHGEF40Q8TER5 1519 aa15.95■□□□□ 0.14
SS18-213ENST00000579640 EIF2AK4Q9P2K8 1649 aaKnown RBP15.95■□□□□ 0.14
SS18-213ENST00000579640 REREQ9P2R6 1566 aa15.94■□□□□ 0.14
SS18-213ENST00000579640 ATP10AO60312 1499 aa15.94■□□□□ 0.14
SS18-213ENST00000579640 BCORL1Q5H9F3 1711 aa15.91■□□□□ 0.14
SS18-213ENST00000579640 UNC13BO14795 1591 aa15.9■□□□□ 0.14
SS18-213ENST00000579640 AGLP35573 1532 aa15.88■□□□□ 0.13
SS18-213ENST00000579640 KDM5DQ9BY66 1539 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms