RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 PTPN23Q9H3S7 1636 aa24.71■■□□□ 1.55
SS18-211ENST00000578954 CDC42BPBQ9Y5S2 1711 aa24.7■■□□□ 1.54
SS18-211ENST00000578954 MAP3K4Q9Y6R4 1608 aa24.66■■□□□ 1.54
SS18-211ENST00000578954 CFDP1Q9UEE9 299 aaPredicted RBP24.66■■□□□ 1.54
SS18-211ENST00000578954 ARHGAP5Q13017 1502 aa24.63■■□□□ 1.53
SS18-211ENST00000578954 CAMSAP2Q08AD1 1489 aa24.63■■□□□ 1.53
SS18-211ENST00000578954 CD109Q6YHK3 1445 aa24.62■■□□□ 1.53
SS18-211ENST00000578954 SAMD9LQ8IVG5 1584 aa24.6■■□□□ 1.53
SS18-211ENST00000578954 KIF13AQ9H1H9 1805 aa24.6■■□□□ 1.53
SS18-211ENST00000578954 FAM69CQ0P6D2 419 aa24.57■■□□□ 1.52
SS18-211ENST00000578954 EFCAB2Q5VUJ9 269 aa24.57■■□□□ 1.52
SS18-211ENST00000578954 PLEKHH2Q8IVE3 1493 aa24.57■■□□□ 1.52
SS18-211ENST00000578954 KIAA1107Q9UPP5 1409 aa24.56■■□□□ 1.52
SS18-211ENST00000578954 FAM50AQ14320 339 aaKnown RBP24.56■■□□□ 1.52
SS18-211ENST00000578954 FANCAO15360 1455 aa24.56■■□□□ 1.52
SS18-211ENST00000578954 ZNF644Q9H582 1327 aaPredicted RBP24.56■■□□□ 1.52
SS18-211ENST00000578954 CFAP74Q9C0B2 1584 aa24.55■■□□□ 1.52
SS18-211ENST00000578954 ABCC1P33527 1531 aa24.54■■□□□ 1.52
SS18-211ENST00000578954 DNMT1P26358 1616 aaKnown RBP24.53■■□□□ 1.52
SS18-211ENST00000578954 ARHGEF5Q12774 1597 aa24.53■■□□□ 1.52
SS18-211ENST00000578954 MBD5Q9P267 1494 aa24.52■■□□□ 1.52
SS18-211ENST00000578954 NEO1Q92859 1461 aa24.51■■□□□ 1.51
SS18-211ENST00000578954 PPRC1Q5VV67 1664 aaKnown RBP24.51■■□□□ 1.51
SS18-211ENST00000578954 PCGF6Q9BYE7 350 aa24.51■■□□□ 1.51
SS18-211ENST00000578954 ZNF777Q9ULD5 760 aaPredicted RBP24.5■■□□□ 1.51
SS18-211ENST00000578954 ABCC5O15440 1437 aa24.49■■□□□ 1.51
SS18-211ENST00000578954 DAPK1P53355 1430 aa24.49■■□□□ 1.51
SS18-211ENST00000578954 SYCP2Q9BX26 1530 aa24.49■■□□□ 1.51
SS18-211ENST00000578954 AKNAQ7Z591 1439 aa24.48■■□□□ 1.51
SS18-211ENST00000578954 ARHGEF12Q9NZN5 1544 aa24.48■■□□□ 1.51
SS18-211ENST00000578954 TEX14Q8IWB6 1497 aa24.46■■□□□ 1.51
SS18-211ENST00000578954 PTPRKQ15262 1439 aa24.46■■□□□ 1.51
SS18-211ENST00000578954 RSPH4AQ5TD94 716 aa24.45■■□□□ 1.5
SS18-211ENST00000578954 CROCC2H7BZ55 1655 aa24.45■■□□□ 1.5
SS18-211ENST00000578954 ADGRL1O94910 1474 aa24.45■■□□□ 1.5
SS18-211ENST00000578954 CCDC141Q6ZP82 1450 aa24.45■■□□□ 1.5
SS18-211ENST00000578954 SHANK2Q9UPX8 1470 aa24.45■■□□□ 1.5
SS18-211ENST00000578954 HNRNPMP52272 730 aaKnown RBP eCLIP24.4■■□□□ 1.5
SS18-211ENST00000578954 TSPOAP1O95153 1857 aa24.39■■□□□ 1.5
SS18-211ENST00000578954 MAST1Q9Y2H9 1570 aa24.39■■□□□ 1.5
SS18-211ENST00000578954 SCAPERQ9BY12 1400 aa24.39■■□□□ 1.5
SS18-211ENST00000578954 ADGRL2O95490 1459 aa24.38■■□□□ 1.49
SS18-211ENST00000578954 TRAPPC8Q9Y2L5 1435 aa24.38■■□□□ 1.49
SS18-211ENST00000578954 ROCK1Q13464 1354 aa24.38■■□□□ 1.49
SS18-211ENST00000578954 ITGAEP38570 1179 aa24.37■■□□□ 1.49
SS18-211ENST00000578954 POGZQ7Z3K3 1410 aa24.35■■□□□ 1.49
SS18-211ENST00000578954 C9orf84Q5VXU9 1444 aa24.35■■□□□ 1.49
SS18-211ENST00000578954 ADGBQ8N7X0 1667 aa24.34■■□□□ 1.49
SS18-211ENST00000578954 KDM5CP41229 1560 aa24.33■■□□□ 1.49
SS18-211ENST00000578954 ZNF518AQ6AHZ1 1483 aa24.33■■□□□ 1.49
SS18-211ENST00000578954 DENND4BO75064 1496 aaPredicted RBP24.32■■□□□ 1.48
SS18-211ENST00000578954 HFM1A2PYH4 1435 aa24.32■■□□□ 1.48
SS18-211ENST00000578954 RTEL1-TNFRSF6BF6WH68 1400 aa24.3■■□□□ 1.48
SS18-211ENST00000578954 NCOA1Q15788 1441 aa24.3■■□□□ 1.48
SS18-211ENST00000578954 TSPY4P0CV99 314 aa24.3■■□□□ 1.48
SS18-211ENST00000578954 TSPY10P0CW01 314 aa24.3■■□□□ 1.48
SS18-211ENST00000578954 RICTORQ6R327 1708 aa24.29■■□□□ 1.48
SS18-211ENST00000578954 TRHP20396 242 aaPredicted RBP24.28■■□□□ 1.48
SS18-211ENST00000578954 ZFYVE16Q7Z3T8 1539 aa24.28■■□□□ 1.48
SS18-211ENST00000578954 PLXNC1O60486 1568 aa24.28■■□□□ 1.48
SS18-211ENST00000578954 INO80Q9ULG1 1556 aaPredicted RBP24.28■■□□□ 1.48
SS18-211ENST00000578954 GCC2Q8IWJ2 1684 aa24.27■■□□□ 1.48
SS18-211ENST00000578954 NAIPQ13075 1403 aa24.27■■□□□ 1.48
SS18-211ENST00000578954 FRMPD1Q5SYB0 1578 aa24.27■■□□□ 1.48
SS18-211ENST00000578954 ANKRD30AQ9BXX3 1397 aa24.27■■□□□ 1.48
SS18-211ENST00000578954 AFAP1Q8N556 730 aa24.26■■□□□ 1.47
SS18-211ENST00000578954 CHIC2Q9UKJ5 165 aa24.26■■□□□ 1.47
SS18-211ENST00000578954 MLH3Q9UHC1 1453 aa24.25■■□□□ 1.47
SS18-211ENST00000578954 ZMYM4Q5VZL5 1548 aa24.25■■□□□ 1.47
SS18-211ENST00000578954 SPAG9O60271 1321 aaKnown RBP24.24■■□□□ 1.47
SS18-211ENST00000578954 SETD5Q9C0A6 1442 aa24.24■■□□□ 1.47
SS18-211ENST00000578954 ATP7AQ04656 1500 aa24.24■■□□□ 1.47
SS18-211ENST00000578954 HECW2Q9P2P5 1572 aa24.21■■□□□ 1.47
SS18-211ENST00000578954 KIDINS220Q9ULH0 1771 aa24.21■■□□□ 1.47
SS18-211ENST00000578954 COL17A1Q9UMD9 1497 aaPredicted RBP24.2■■□□□ 1.47
SS18-211ENST00000578954 RRP7BPQ9NSQ0 103 aa24.19■■□□□ 1.46
SS18-211ENST00000578954 KIF15Q9NS87 1388 aa24.18■■□□□ 1.46
SS18-211ENST00000578954 RAPGEF3O95398 923 aa24.18■■□□□ 1.46
SS18-211ENST00000578954 HRCP23327 699 aa24.18■■□□□ 1.46
SS18-211ENST00000578954 RAB3GAP2Q9H2M9 1393 aa24.17■■□□□ 1.46
SS18-211ENST00000578954 MAGI2Q86UL8 1455 aa24.16■■□□□ 1.46
SS18-211ENST00000578954 DUOX2Q9NRD8 1548 aa24.15■■□□□ 1.46
SS18-211ENST00000578954 ANKRD50Q9ULJ7 1429 aa24.13■■□□□ 1.45
SS18-211ENST00000578954 KDM6BO15054 1643 aa24.11■■□□□ 1.45
SS18-211ENST00000578954 ABCA6Q8N139 1617 aa24.11■■□□□ 1.45
SS18-211ENST00000578954 ERBINQ96RT1 1412 aa24.1■■□□□ 1.45
SS18-211ENST00000578954 DIP2CQ9Y2E4 1556 aa24.09■■□□□ 1.45
SS18-211ENST00000578954 ACIN1Q9UKV3 1341 aaKnown RBP24.09■■□□□ 1.45
SS18-211ENST00000578954 DHX29Q7Z478 1369 aaKnown RBP24.06■■□□□ 1.44
SS18-211ENST00000578954 YEATS2Q9ULM3 1422 aa24.06■■□□□ 1.44
SS18-211ENST00000578954 A2MP01023 1474 aa24.05■■□□□ 1.44
SS18-211ENST00000578954 ARHGEF40Q8TER5 1519 aa24.05■■□□□ 1.44
SS18-211ENST00000578954 REREQ9P2R6 1566 aa24.04■■□□□ 1.44
SS18-211ENST00000578954 EIF2AK4Q9P2K8 1649 aaKnown RBP24.04■■□□□ 1.44
SS18-211ENST00000578954 BCORL1Q5H9F3 1711 aa24.01■■□□□ 1.43
SS18-211ENST00000578954 MYT1LQ9UL68 1186 aa24.01■■□□□ 1.43
SS18-211ENST00000578954 ATP10AO60312 1499 aa24■■□□□ 1.43
SS18-211ENST00000578954 UNC13BO14795 1591 aa23.99■■□□□ 1.43
SS18-211ENST00000578954 KDM5DQ9BY66 1539 aa23.99■■□□□ 1.43
SS18-211ENST00000578954 DEPDC5O75140 1603 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms