RNA–Protein interactions for RNA: ENST00000575214.1

HCFC1R1-208, Transcript of host cell factor C1 regulator 1, human

TSL 2

Gene HCFC1R1, Length 1,365 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCFC1R1-208	ENST00000575214	SCAPER	Q9BY12	1400 aa		32.78	■■■□□ 2.84
HCFC1R1-208	ENST00000575214	PREX2	Q70Z35	1606 aa		32.77	■■■□□ 2.84
HCFC1R1-208	ENST00000575214	TIAM1	Q13009	1591 aa		32.75	■■■□□ 2.83
HCFC1R1-208	ENST00000575214	RICTOR	Q6R327	1708 aa		32.74	■■■□□ 2.83
HCFC1R1-208	ENST00000575214	CDC42BPB	Q9Y5S2	1711 aa		32.74	■■■□□ 2.83
HCFC1R1-208	ENST00000575214	POGZ	Q7Z3K3	1410 aa		32.71	■■■□□ 2.83
HCFC1R1-208	ENST00000575214	CDC42BPA	Q5VT25	1732 aa		32.71	■■■□□ 2.83
HCFC1R1-208	ENST00000575214	CCNB3	Q8WWL7	1395 aa		32.71	■■■□□ 2.83
HCFC1R1-208	ENST00000575214	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.7	■■■□□ 2.83
HCFC1R1-208	ENST00000575214	KDM4F	A0A1W2PPD8	638 aa		32.66	■■■□□ 2.82
HCFC1R1-208	ENST00000575214	ZMYM4	Q5VZL5	1548 aa		32.65	■■■□□ 2.82
HCFC1R1-208	ENST00000575214	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.65	■■■□□ 2.82
HCFC1R1-208	ENST00000575214	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.63	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	MAP3K1	Q13233	1512 aa		32.62	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	LRRC9	Q6ZRR7	1453 aa		32.62	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	ABCC1	P33527	1531 aa		32.62	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	ZNF518A	Q6AHZ1	1483 aa		32.61	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	ARHGEF40	Q8TER5	1519 aa		32.61	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.6	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	APLP2	Q06481	763 aa		32.6	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	NCOA2	Q15596	1464 aa		32.6	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	MAGI2	Q86UL8	1455 aa		32.58	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	ZFYVE16	Q7Z3T8	1539 aa		32.58	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	AFAP1	Q8N556	730 aa		32.58	■■■□□ 2.81
HCFC1R1-208	ENST00000575214	KANK4	Q5T7N3	995 aa	Predicted RBP	32.57	■■■□□ 2.8
HCFC1R1-208	ENST00000575214	YEATS2	Q9ULM3	1422 aa		32.56	■■■□□ 2.8
HCFC1R1-208	ENST00000575214	SAMD9L	Q8IVG5	1584 aa		32.56	■■■□□ 2.8
HCFC1R1-208	ENST00000575214	ARHGEF12	Q9NZN5	1544 aa		32.56	■■■□□ 2.8
HCFC1R1-208	ENST00000575214	TRAPPC8	Q9Y2L5	1435 aa		32.54	■■■□□ 2.8
HCFC1R1-208	ENST00000575214	ITSN2	Q9NZM3	1697 aa		32.54	■■■□□ 2.8
HCFC1R1-208	ENST00000575214	KDM5C	P41229	1560 aa		32.53	■■■□□ 2.8
HCFC1R1-208	ENST00000575214	MYT1L	Q9UL68	1186 aa		32.52	■■■□□ 2.8
HCFC1R1-208	ENST00000575214	SYCP2	Q9BX26	1530 aa		32.51	■■■□□ 2.79
HCFC1R1-208	ENST00000575214	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.51	■■■□□ 2.79
HCFC1R1-208	ENST00000575214	PLEKHH2	Q8IVE3	1493 aa		32.49	■■■□□ 2.79
HCFC1R1-208	ENST00000575214	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.47	■■■□□ 2.79
HCFC1R1-208	ENST00000575214	KIAA1107	Q9UPP5	1409 aa		32.46	■■■□□ 2.79
HCFC1R1-208	ENST00000575214	HECW2	Q9P2P5	1572 aa		32.46	■■■□□ 2.79
HCFC1R1-208	ENST00000575214	ZNF644	Q9H582	1327 aa	Predicted RBP	32.44	■■■□□ 2.78
HCFC1R1-208	ENST00000575214	MLH3	Q9UHC1	1453 aa		32.42	■■■□□ 2.78
HCFC1R1-208	ENST00000575214	ATP10A	O60312	1499 aa		32.41	■■■□□ 2.78
HCFC1R1-208	ENST00000575214	C9orf84	Q5VXU9	1444 aa		32.4	■■■□□ 2.78
HCFC1R1-208	ENST00000575214	SPAG9	O60271	1321 aa	Known RBP	32.36	■■■□□ 2.77
HCFC1R1-208	ENST00000575214	CAMSAP2	Q08AD1	1489 aa		32.35	■■■□□ 2.77
HCFC1R1-208	ENST00000575214	DIP2C	Q9Y2E4	1556 aa		32.35	■■■□□ 2.77
HCFC1R1-208	ENST00000575214	BCORL1	Q5H9F3	1711 aa		32.34	■■■□□ 2.77
HCFC1R1-208	ENST00000575214	ABCA6	Q8N139	1617 aa		32.33	■■■□□ 2.77
HCFC1R1-208	ENST00000575214	MYOM3	Q5VTT5	1437 aa		32.32	■■■□□ 2.77
HCFC1R1-208	ENST00000575214	SIGLEC1	Q9BZZ2	1709 aa		32.32	■■■□□ 2.76
HCFC1R1-208	ENST00000575214	MBD5	Q9P267	1494 aa		32.32	■■■□□ 2.76
HCFC1R1-208	ENST00000575214	KIDINS220	Q9ULH0	1771 aa		32.3	■■■□□ 2.76
HCFC1R1-208	ENST00000575214	ADAMTSL3	P82987	1691 aa		32.3	■■■□□ 2.76
HCFC1R1-208	ENST00000575214	MLEC	Q14165	292 aa		32.28	■■■□□ 2.76
HCFC1R1-208	ENST00000575214	ATP7A	Q04656	1500 aa		32.27	■■■□□ 2.76
HCFC1R1-208	ENST00000575214	MIA2	Q96PC5	1412 aa		32.27	■■■□□ 2.76
HCFC1R1-208	ENST00000575214	RERE	Q9P2R6	1566 aa		32.24	■■■□□ 2.75
HCFC1R1-208	ENST00000575214	CCDC141	Q6ZP82	1450 aa		32.24	■■■□□ 2.75
HCFC1R1-208	ENST00000575214	INO80	Q9ULG1	1556 aa	Predicted RBP	32.23	■■■□□ 2.75
HCFC1R1-208	ENST00000575214	MADD	Q8WXG6	1647 aa		32.23	■■■□□ 2.75
HCFC1R1-208	ENST00000575214	RSPH4A	Q5TD94	716 aa		32.22	■■■□□ 2.75
HCFC1R1-208	ENST00000575214	PTPRM	P28827	1452 aa		32.18	■■■□□ 2.74
HCFC1R1-208	ENST00000575214	ARHGEF5	Q12774	1597 aa		32.17	■■■□□ 2.74
HCFC1R1-208	ENST00000575214	RTEL1-TNFRSF6B	F6WH68	1400 aa		32.16	■■■□□ 2.74
HCFC1R1-208	ENST00000575214	AGL	P35573	1532 aa		32.15	■■■□□ 2.74
HCFC1R1-208	ENST00000575214	RIMS1	Q86UR5	1692 aa	Known RBP	32.14	■■■□□ 2.74
HCFC1R1-208	ENST00000575214	TSPY4	P0CV99	314 aa		32.13	■■■□□ 2.73
HCFC1R1-208	ENST00000575214	TSPY10	P0CW01	314 aa		32.13	■■■□□ 2.73
HCFC1R1-208	ENST00000575214	FGD6	Q6ZV73	1430 aa		32.12	■■■□□ 2.73
HCFC1R1-208	ENST00000575214	A2M	P01023	1474 aa		32.12	■■■□□ 2.73
HCFC1R1-208	ENST00000575214	PTPN23	Q9H3S7	1636 aa		32.11	■■■□□ 2.73
HCFC1R1-208	ENST00000575214	FER1L4	A9Z1Z3	1794 aa		32.08	■■■□□ 2.73
HCFC1R1-208	ENST00000575214	PLXNC1	O60486	1568 aa		32.06	■■■□□ 2.72
HCFC1R1-208	ENST00000575214	ADGB	Q8N7X0	1667 aa		32.06	■■■□□ 2.72
HCFC1R1-208	ENST00000575214	PLPPR3	Q6T4P5	718 aa		32.05	■■■□□ 2.72
HCFC1R1-208	ENST00000575214	TCOF1	Q13428	1488 aa	Known RBP	32.04	■■■□□ 2.72
HCFC1R1-208	ENST00000575214	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.03	■■■□□ 2.72
HCFC1R1-208	ENST00000575214	ESF1	Q9H501	851 aa	Known RBP	32.01	■■■□□ 2.71
HCFC1R1-208	ENST00000575214	DHX29	Q7Z478	1369 aa	Known RBP	32	■■■□□ 2.71
HCFC1R1-208	ENST00000575214	MAST1	Q9Y2H9	1570 aa		32	■■■□□ 2.71
HCFC1R1-208	ENST00000575214	ABCC5	O15440	1437 aa		31.97	■■■□□ 2.71
HCFC1R1-208	ENST00000575214	FAM50A	Q14320	339 aa	Known RBP	31.95	■■■□□ 2.71
HCFC1R1-208	ENST00000575214	GGT6	Q6P531	493 aa		31.94	■■■□□ 2.7
HCFC1R1-208	ENST00000575214	DAPK1	P53355	1430 aa		31.94	■■■□□ 2.7
HCFC1R1-208	ENST00000575214	SHANK2	Q9UPX8	1470 aa		31.93	■■■□□ 2.7
HCFC1R1-208	ENST00000575214	DNMT1	P26358	1616 aa	Known RBP	31.93	■■■□□ 2.7
HCFC1R1-208	ENST00000575214	CEBPA	P49715	358 aa	Predicted RBP	31.91	■■■□□ 2.7
HCFC1R1-208	ENST00000575214	CROCC2	H7BZ55	1655 aa		31.9	■■■□□ 2.7
HCFC1R1-208	ENST00000575214	CNTLN	Q9NXG0	1405 aa		31.9	■■■□□ 2.7
HCFC1R1-208	ENST00000575214	KIF3B	O15066	747 aa		31.9	■■■□□ 2.7
HCFC1R1-208	ENST00000575214	CHIC2	Q9UKJ5	165 aa		31.83	■■■□□ 2.69
HCFC1R1-208	ENST00000575214	KIF15	Q9NS87	1388 aa		31.83	■■■□□ 2.69
HCFC1R1-208	ENST00000575214	PPP6R1	Q9UPN7	881 aa		31.82	■■■□□ 2.69
HCFC1R1-208	ENST00000575214	RRP7BP	Q9NSQ0	103 aa		31.81	■■■□□ 2.68
HCFC1R1-208	ENST00000575214	DUOX2	Q9NRD8	1548 aa		31.8	■■■□□ 2.68
HCFC1R1-208	ENST00000575214	C3	P01024	1663 aa		31.79	■■■□□ 2.68
HCFC1R1-208	ENST00000575214	ANKRD30A	Q9BXX3	1397 aa		31.79	■■■□□ 2.68
HCFC1R1-208	ENST00000575214	CLTC	Q00610	1675 aa	Known RBP	31.78	■■■□□ 2.68
HCFC1R1-208	ENST00000575214	ZMYM3	Q14202	1370 aa		31.77	■■■□□ 2.68
HCFC1R1-208	ENST00000575214	MROH2A	A6NES4	1674 aa		31.76	■■■□□ 2.68
HCFC1R1-208	ENST00000575214	LMTK3	Q96Q04	1460 aa		31.76	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms