RNA–Protein interactions for RNA: ENST00000575214.1

HCFC1R1-208, Transcript of host cell factor C1 regulator 1, humanhuman

TSL 2

Gene HCFC1R1, Length 1,365 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1R1-208ENST00000575214 NISCHQ9Y2I1 1504 aa50.32■■■■■ 5.65
HCFC1R1-208ENST00000575214 CCDC180Q9P1Z9 1646 aa44.73■■■■■ 4.75
HCFC1R1-208ENST00000575214 ABCC9O60706 1549 aa43.93■■■■■ 4.62
HCFC1R1-208ENST00000575214 DCAF8L2P0C7V8 631 aa42.18■■■■■ 4.34
HCFC1R1-208ENST00000575214 RB1CC1Q8TDY2 1594 aa42.18■■■■■ 4.34
HCFC1R1-208ENST00000575214 NACADO15069 1562 aa42.1■■■■■ 4.33
HCFC1R1-208ENST00000575214 ZCCHC6Q5VYS8 1495 aaKnown RBP41.91■■■■■ 4.3
HCFC1R1-208ENST00000575214 MYO15BQ96JP2 1530 aa41.8■■■■■ 4.28
HCFC1R1-208ENST00000575214 DCAF1Q9Y4B6 1507 aa41.6■■■■■ 4.25
HCFC1R1-208ENST00000575214 UNC13AQ9UPW8 1703 aa41.15■■■■■ 4.18
HCFC1R1-208ENST00000575214 PABPN1Q86U42 306 aaKnown RBP eCLIP41.06■■■■■ 4.16
HCFC1R1-208ENST00000575214 SCRIBQ14160 1630 aa40.88■■■■■ 4.13
HCFC1R1-208ENST00000575214 BICRAQ9NZM4 1560 aa40.88■■■■■ 4.13
HCFC1R1-208ENST00000575214 DNAJC5BQ9UF47 199 aa40.46■■■■■ 4.07
HCFC1R1-208ENST00000575214 SHROOM4Q9ULL8 1493 aa40.45■■■■■ 4.07
HCFC1R1-208ENST00000575214 EIF4G1Q04637 1599 aaKnown RBP39.84■■■■□ 3.97
HCFC1R1-208ENST00000575214 CC2D2AQ9P2K1 1620 aa39.7■■■■□ 3.95
HCFC1R1-208ENST00000575214 CECR2Q9BXF3 1484 aa39.47■■■■□ 3.91
HCFC1R1-208ENST00000575214 SMARCA4P51532 1647 aa39.06■■■■□ 3.84
HCFC1R1-208ENST00000575214 BAZ1AQ9NRL2 1556 aaPredicted RBP39.02■■■■□ 3.84
HCFC1R1-208ENST00000575214 ATAD2BQ9ULI0 1458 aa38.88■■■■□ 3.82
HCFC1R1-208ENST00000575214 NCAPD3P42695 1498 aa38.85■■■■□ 3.81
HCFC1R1-208ENST00000575214 SMARCA2P51531 1590 aa38.83■■■■□ 3.81
HCFC1R1-208ENST00000575214 MROH2BQ7Z745 1585 aa38.79■■■■□ 3.8
HCFC1R1-208ENST00000575214 HMGXB3Q12766 1538 aa38.65■■■■□ 3.78
HCFC1R1-208ENST00000575214 PEG3Q9GZU2 1588 aa38.64■■■■□ 3.78
HCFC1R1-208ENST00000575214 BAZ1BQ9UIG0 1483 aaKnown RBP38.58■■■■□ 3.77
HCFC1R1-208ENST00000575214 WIZO95785 1651 aa38.36■■■■□ 3.73
HCFC1R1-208ENST00000575214 RSF1Q96T23 1441 aaPredicted RBP38.33■■■■□ 3.73
HCFC1R1-208ENST00000575214 NESP48681 1621 aa37.98■■■■□ 3.67
HCFC1R1-208ENST00000575214 TOP2AP11388 1531 aaKnown RBP37.96■■■■□ 3.67
HCFC1R1-208ENST00000575214 ERCC6Q03468 1493 aa37.9■■■■□ 3.66
HCFC1R1-208ENST00000575214 LAMC3Q9Y6N6 1575 aa37.84■■■■□ 3.65
HCFC1R1-208ENST00000575214 CADPSQ9ULU8 1353 aa37.75■■■■□ 3.63
HCFC1R1-208ENST00000575214 PDS5BQ9NTI5 1447 aa37.63■■■■□ 3.62
HCFC1R1-208ENST00000575214 CCDC88BA6NC98 1476 aa37.52■■■■□ 3.6
HCFC1R1-208ENST00000575214 CFTRP13569 1480 aa37.49■■■■□ 3.59
HCFC1R1-208ENST00000575214 KIF21AQ7Z4S6 1674 aa37.48■■■■□ 3.59
HCFC1R1-208ENST00000575214 CUX2O14529 1486 aa37.46■■■■□ 3.59
HCFC1R1-208ENST00000575214 SUPT5HO00267 1087 aaKnown RBP37.39■■■■□ 3.58
HCFC1R1-208ENST00000575214 THOC2Q8NI27 1593 aaKnown RBP37.38■■■■□ 3.57
HCFC1R1-208ENST00000575214 FANCD2Q9BXW9 1451 aa37.32■■■■□ 3.56
HCFC1R1-208ENST00000575214 CEP164Q9UPV0 1460 aa37.29■■■■□ 3.56
HCFC1R1-208ENST00000575214 MRC2Q9UBG0 1479 aa37.24■■■■□ 3.55
HCFC1R1-208ENST00000575214 PRDM2Q13029 1718 aa37.13■■■■□ 3.54
HCFC1R1-208ENST00000575214 WDR62O43379 1518 aa37.1■■■■□ 3.53
HCFC1R1-208ENST00000575214 URB2Q14146 1524 aaKnown RBP36.94■■■■□ 3.5
HCFC1R1-208ENST00000575214 DNAJC5Q9H3Z4 198 aa36.8■■■■□ 3.48
HCFC1R1-208ENST00000575214 TOPBP1Q92547 1522 aa36.71■■■■□ 3.47
HCFC1R1-208ENST00000575214 ABCC8Q09428 1581 aa36.68■■■■□ 3.46
HCFC1R1-208ENST00000575214 DNMBPQ6XZF7 1577 aa36.65■■■■□ 3.46
HCFC1R1-208ENST00000575214 IFT140Q96RY7 1462 aa36.49■■■■□ 3.43
HCFC1R1-208ENST00000575214 CUX1P39880 1505 aa36.41■■■■□ 3.42
HCFC1R1-208ENST00000575214 POLA1P09884 1462 aaPredicted RBP36.4■■■■□ 3.42
HCFC1R1-208ENST00000575214 ZNF608Q9ULD9 1512 aaPredicted RBP36.34■■■■□ 3.41
HCFC1R1-208ENST00000575214 FGD5Q6ZNL6 1462 aa36.3■■■■□ 3.4
HCFC1R1-208ENST00000575214 TARBP1Q13395 1621 aaKnown RBP36.28■■■■□ 3.4
HCFC1R1-208ENST00000575214 SOGA1O94964 1423 aa36.26■■■■□ 3.39
HCFC1R1-208ENST00000575214 RAD54L2Q9Y4B4 1467 aa36.25■■■■□ 3.39
HCFC1R1-208ENST00000575214 EIF4G3O43432 1585 aaKnown RBP36.18■■■■□ 3.38
HCFC1R1-208ENST00000575214 WRNQ14191 1432 aaPredicted RBP eCLIP36.17■■■■□ 3.38
HCFC1R1-208ENST00000575214 AQRO60306 1485 aaKnown RBP eCLIP36.14■■■■□ 3.382e-10■■■■■ 40.6
HCFC1R1-208ENST00000575214 TDRD9Q8NDG6 1382 aaKnown RBP36.07■■■■□ 3.36
HCFC1R1-208ENST00000575214 TOP2BQ02880 1626 aa36.05■■■■□ 3.36
HCFC1R1-208ENST00000575214 SYNJ1O43426 1573 aa36.05■■■■□ 3.36
HCFC1R1-208ENST00000575214 BIVM-ERCC5R4GMW8 1640 aa36.03■■■■□ 3.36
HCFC1R1-208ENST00000575214 WDR97A6NE52 1622 aa35.98■■■■□ 3.35
HCFC1R1-208ENST00000575214 ABCA10Q8WWZ4 1543 aa35.93■■■■□ 3.34
HCFC1R1-208ENST00000575214 OSCARQ8IYS5 282 aa35.93■■■■□ 3.34
HCFC1R1-208ENST00000575214 GRIN2BQ13224 1484 aa35.84■■■■□ 3.33
HCFC1R1-208ENST00000575214 GAPVD1Q14C86 1478 aa35.84■■■■□ 3.33
HCFC1R1-208ENST00000575214 SNAPC4Q5SXM2 1469 aa35.81■■■■□ 3.32
HCFC1R1-208ENST00000575214 FBLN2P98095 1184 aa35.78■■■■□ 3.32
HCFC1R1-208ENST00000575214 ABCA5Q8WWZ7 1642 aa35.77■■■■□ 3.32
HCFC1R1-208ENST00000575214 MAGI1Q96QZ7 1491 aaPredicted RBP35.74■■■■□ 3.31
HCFC1R1-208ENST00000575214 PBRM1Q86U86 1689 aa35.72■■■■□ 3.31
HCFC1R1-208ENST00000575214 CHD1O14646 1710 aa35.71■■■■□ 3.31
HCFC1R1-208ENST00000575214 CHMP7Q8WUX9 453 aaPredicted RBP35.64■■■■□ 3.3
HCFC1R1-208ENST00000575214 SYNJ2O15056 1496 aa35.6■■■■□ 3.29
HCFC1R1-208ENST00000575214 ERICH3Q5RHP9 1530 aa35.5■■■■□ 3.27
HCFC1R1-208ENST00000575214 ADAMTS12P58397 1594 aa35.46■■■■□ 3.27
HCFC1R1-208ENST00000575214 FHAD1B1AJZ9 1412 aa35.42■■■■□ 3.26
HCFC1R1-208ENST00000575214 KIF27Q86VH2 1401 aa35.42■■■■□ 3.26
HCFC1R1-208ENST00000575214 GRIN2AQ12879 1464 aa35.37■■■■□ 3.25
HCFC1R1-208ENST00000575214 TRIM41Q8WV44 630 aa35.36■■■■□ 3.25
HCFC1R1-208ENST00000575214 ARHGEF11O15085 1522 aa35.34■■■■□ 3.25
HCFC1R1-208ENST00000575214 CLASP1Q7Z460 1538 aa35.34■■■■□ 3.25
HCFC1R1-208ENST00000575214 RIMBP3CA6NJZ7 1639 aa35.33■■■■□ 3.25
HCFC1R1-208ENST00000575214 RIMBP3BA6NNM3 1639 aa35.33■■■■□ 3.25
HCFC1R1-208ENST00000575214 RIMBP3Q9UFD9 1639 aa35.33■■■■□ 3.25
HCFC1R1-208ENST00000575214 IGF1RP08069 1367 aa35.26■■■■□ 3.24
HCFC1R1-208ENST00000575214 NUP160Q12769 1436 aa35.2■■■■□ 3.23
HCFC1R1-208ENST00000575214 CEP170Q5SW79 1584 aa35.18■■■■□ 3.22
HCFC1R1-208ENST00000575214 CUL7Q14999 1698 aa35.15■■■■□ 3.22
HCFC1R1-208ENST00000575214 CARMIL1Q5VZK9 1371 aa35.07■■■■□ 3.21
HCFC1R1-208ENST00000575214 RUSC2Q8N2Y8 1516 aa35.06■■■■□ 3.2
HCFC1R1-208ENST00000575214 ARAP1Q96P48 1450 aa35.05■■■■□ 3.2
HCFC1R1-208ENST00000575214 CYB5RLQ6IPT4 315 aa35.05■■■■□ 3.2
HCFC1R1-208ENST00000575214 SHROOM2Q13796 1616 aa34.91■■■■□ 3.18
HCFC1R1-208ENST00000575214 JPH4Q96JJ6 628 aa34.87■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms