RNA–Protein interactions for RNA: ENST00000566200.1

ABCA3-204, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 3

Gene ABCA3, Length 1,232 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-204ENST00000566200 RIMS1Q86UR5 1692 aaKnown RBP31.06■■■□□ 2.56
ABCA3-204ENST00000566200 POGZQ7Z3K3 1410 aa31.06■■■□□ 2.56
ABCA3-204ENST00000566200 SCAPERQ9BY12 1400 aa31.06■■■□□ 2.56
ABCA3-204ENST00000566200 MAGI2Q86UL8 1455 aa31.04■■■□□ 2.56
ABCA3-204ENST00000566200 TROQ12816 1431 aaPredicted RBP31.02■■■□□ 2.56
ABCA3-204ENST00000566200 CDK11AQ9UQ88 783 aaPredicted RBP30.99■■■□□ 2.55
ABCA3-204ENST00000566200 PCF11O94913 1555 aaKnown RBP30.96■■■□□ 2.55
ABCA3-204ENST00000566200 EFCAB2Q5VUJ9 269 aa30.96■■■□□ 2.55
ABCA3-204ENST00000566200 LMTK3Q96Q04 1460 aa30.95■■■□□ 2.54
ABCA3-204ENST00000566200 CLIP1P30622 1438 aa30.92■■■□□ 2.54
ABCA3-204ENST00000566200 ARHGAP5Q13017 1502 aa30.92■■■□□ 2.54
ABCA3-204ENST00000566200 CASKIN1Q8WXD9 1431 aa30.91■■■□□ 2.54
ABCA3-204ENST00000566200 CDC42BPBQ9Y5S2 1711 aa30.91■■■□□ 2.54
ABCA3-204ENST00000566200 FER1L4A9Z1Z3 1794 aa30.88■■■□□ 2.53
ABCA3-204ENST00000566200 ATP10AO60312 1499 aa30.88■■■□□ 2.53
ABCA3-204ENST00000566200 KDM5CP41229 1560 aa30.88■■■□□ 2.53
ABCA3-204ENST00000566200 CCDC18Q5T9S5 1454 aa30.86■■■□□ 2.53
ABCA3-204ENST00000566200 ZNF518AQ6AHZ1 1483 aa30.86■■■□□ 2.53
ABCA3-204ENST00000566200 PREX2Q70Z35 1606 aa30.84■■■□□ 2.53
ABCA3-204ENST00000566200 C9orf84Q5VXU9 1444 aa30.84■■■□□ 2.53
ABCA3-204ENST00000566200 MLECQ14165 292 aa30.83■■■□□ 2.53
ABCA3-204ENST00000566200 ARHGEF12Q9NZN5 1544 aa30.83■■■□□ 2.53
ABCA3-204ENST00000566200 AFAP1Q8N556 730 aa30.81■■■□□ 2.52
ABCA3-204ENST00000566200 FYCO1Q9BQS8 1478 aa30.79■■■□□ 2.52
ABCA3-204ENST00000566200 PLPPR3Q6T4P5 718 aa30.78■■■□□ 2.52
ABCA3-204ENST00000566200 DIP2CQ9Y2E4 1556 aa30.78■■■□□ 2.52
ABCA3-204ENST00000566200 CDC42BPAQ5VT25 1732 aa30.77■■■□□ 2.52
ABCA3-204ENST00000566200 ABCC1P33527 1531 aa30.77■■■□□ 2.52
ABCA3-204ENST00000566200 ITSN2Q9NZM3 1697 aa30.74■■■□□ 2.51
ABCA3-204ENST00000566200 ABCA6Q8N139 1617 aa30.74■■■□□ 2.51
ABCA3-204ENST00000566200 TRAPPC8Q9Y2L5 1435 aa30.73■■■□□ 2.51
ABCA3-204ENST00000566200 HSPA2P54652 639 aa30.72■■■□□ 2.51
ABCA3-204ENST00000566200 REREQ9P2R6 1566 aa30.71■■■□□ 2.51
ABCA3-204ENST00000566200 MLH3Q9UHC1 1453 aa30.71■■■□□ 2.51
ABCA3-204ENST00000566200 KIDINS220Q9ULH0 1771 aa30.64■■■□□ 2.5
ABCA3-204ENST00000566200 SAMD9LQ8IVG5 1584 aa30.63■■■□□ 2.49
ABCA3-204ENST00000566200 PREX1Q8TCU6 1659 aa30.62■■■□□ 2.49
ABCA3-204ENST00000566200 CEBPAP49715 358 aaPredicted RBP30.62■■■□□ 2.49
ABCA3-204ENST00000566200 MYT1LQ9UL68 1186 aa30.62■■■□□ 2.49
ABCA3-204ENST00000566200 FBXO41Q8TF61 875 aa30.61■■■□□ 2.49
ABCA3-204ENST00000566200 GPATCH8Q9UKJ3 1502 aaKnown RBP30.61■■■□□ 2.49
ABCA3-204ENST00000566200 AGLP35573 1532 aa30.6■■■□□ 2.49
ABCA3-204ENST00000566200 SYCP2Q9BX26 1530 aa30.56■■■□□ 2.48
ABCA3-204ENST00000566200 C3P01024 1663 aa30.54■■■□□ 2.48
ABCA3-204ENST00000566200 ZNF777Q9ULD5 760 aaPredicted RBP30.52■■■□□ 2.48
ABCA3-204ENST00000566200 HNRNPMP52272 730 aaKnown RBP eCLIP30.47■■■□□ 2.47
ABCA3-204ENST00000566200 STRCQ7RTU9 1775 aa30.46■■■□□ 2.47
ABCA3-204ENST00000566200 SETD1BQ9UPS6 1966 aaKnown RBP30.45■■■□□ 2.46
ABCA3-204ENST00000566200 MTUS2Q5JR59 1369 aa30.44■■■□□ 2.46
ABCA3-204ENST00000566200 KIAA1107Q9UPP5 1409 aa30.44■■■□□ 2.46
ABCA3-204ENST00000566200 INO80Q9ULG1 1556 aaPredicted RBP30.44■■■□□ 2.46
ABCA3-204ENST00000566200 CCNB3Q8WWL7 1395 aa30.43■■■□□ 2.46
ABCA3-204ENST00000566200 UHRF1BP1Q6BDS2 1440 aa30.43■■■□□ 2.46
ABCA3-204ENST00000566200 ATP7AQ04656 1500 aa30.42■■■□□ 2.46
ABCA3-204ENST00000566200 TIAM1Q13009 1591 aa30.42■■■□□ 2.46
ABCA3-204ENST00000566200 CFDP1Q9UEE9 299 aaPredicted RBP30.42■■■□□ 2.46
ABCA3-204ENST00000566200 SPAG9O60271 1321 aaKnown RBP30.42■■■□□ 2.46
ABCA3-204ENST00000566200 PLEKHH2Q8IVE3 1493 aa30.41■■■□□ 2.46
ABCA3-204ENST00000566200 CEP162Q5TB80 1403 aa30.4■■■□□ 2.46
ABCA3-204ENST00000566200 SUPT6HQ7KZ85 1726 aaKnown RBP30.4■■■□□ 2.46
ABCA3-204ENST00000566200 EHBP1L1Q8N3D4 1523 aa30.39■■■□□ 2.46
ABCA3-204ENST00000566200 PLXNC1O60486 1568 aa30.38■■■□□ 2.45
ABCA3-204ENST00000566200 CNTLNQ9NXG0 1405 aa30.37■■■□□ 2.45
ABCA3-204ENST00000566200 MROH2AA6NES4 1674 aa30.36■■■□□ 2.45
ABCA3-204ENST00000566200 ESF1Q9H501 851 aaKnown RBP30.34■■■□□ 2.45
ABCA3-204ENST00000566200 ZNF644Q9H582 1327 aaPredicted RBP30.33■■■□□ 2.45
ABCA3-204ENST00000566200 CERKQ8TCT0 537 aa30.32■■■□□ 2.44
ABCA3-204ENST00000566200 A2MP01023 1474 aa30.31■■■□□ 2.44
ABCA3-204ENST00000566200 MBD5Q9P267 1494 aa30.31■■■□□ 2.44
ABCA3-204ENST00000566200 CLTCQ00610 1675 aaKnown RBP30.28■■■□□ 2.44
ABCA3-204ENST00000566200 ADGBQ8N7X0 1667 aa30.27■■■□□ 2.44
ABCA3-204ENST00000566200 NPATQ14207 1427 aa30.25■■■□□ 2.43
ABCA3-204ENST00000566200 ZMYM3Q14202 1370 aa30.25■■■□□ 2.43
ABCA3-204ENST00000566200 DMRT2Q9Y5R5 561 aa30.23■■■□□ 2.43
ABCA3-204ENST00000566200 NCOA2Q15596 1464 aa30.21■■■□□ 2.43
ABCA3-204ENST00000566200 PTPRTO14522 1441 aa30.2■■■□□ 2.42
ABCA3-204ENST00000566200 NCOA1Q15788 1441 aa30.19■■■□□ 2.42
ABCA3-204ENST00000566200 RTEL1-TNFRSF6BF6WH68 1400 aa30.18■■■□□ 2.42
ABCA3-204ENST00000566200 GGT6Q6P531 493 aa30.16■■■□□ 2.42
ABCA3-204ENST00000566200 MYO3AQ8NEV4 1616 aa30.15■■■□□ 2.42
ABCA3-204ENST00000566200 CAMSAP2Q08AD1 1489 aa30.15■■■□□ 2.42
ABCA3-204ENST00000566200 CAMSAP1Q5T5Y3 1602 aa30.14■■■□□ 2.42
ABCA3-204ENST00000566200 PTPRKQ15262 1439 aa30.14■■■□□ 2.42
ABCA3-204ENST00000566200 ZNF142P52746 1687 aaPredicted RBP30.14■■■□□ 2.41
ABCA3-204ENST00000566200 CCDC141Q6ZP82 1450 aa30.12■■■□□ 2.41
ABCA3-204ENST00000566200 LOC105371045A0A1W2PR82 267 aa30.1■■■□□ 2.41
ABCA3-204ENST00000566200 DHX29Q7Z478 1369 aaKnown RBP30.1■■■□□ 2.41
ABCA3-204ENST00000566200 LTBP4Q8N2S1 1624 aa30.09■■■□□ 2.41
ABCA3-204ENST00000566200 VPS8Q8N3P4 1428 aa30.09■■■□□ 2.41
ABCA3-204ENST00000566200 PPP6R1Q9UPN7 881 aa30.07■■■□□ 2.4
ABCA3-204ENST00000566200 CEP170BQ9Y4F5 1589 aaPredicted RBP30.07■■■□□ 2.4
ABCA3-204ENST00000566200 LRRC9Q6ZRR7 1453 aa30.05■■■□□ 2.4
ABCA3-204ENST00000566200 ARHGEF5Q12774 1597 aa30.04■■■□□ 2.4
ABCA3-204ENST00000566200 PLA2R1Q13018 1463 aa30■■■□□ 2.39
ABCA3-204ENST00000566200 NCKAP5LQ9HCH0 1330 aa30■■■□□ 2.39
ABCA3-204ENST00000566200 RSPH4AQ5TD94 716 aa29.99■■■□□ 2.39
ABCA3-204ENST00000566200 KIF3BO15066 747 aa29.98■■■□□ 2.39
ABCA3-204ENST00000566200 TCOF1Q13428 1488 aaKnown RBP29.98■■■□□ 2.39
ABCA3-204ENST00000566200 KDM5DQ9BY66 1539 aa29.96■■■□□ 2.39
ABCA3-204ENST00000566200 MAP3K1Q13233 1512 aa29.96■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms