RNA–Protein interactions for RNA: ENST00000566200.1

ABCA3-204, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 3

Gene ABCA3, Length 1,232 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-204ENST00000566200 NISCHQ9Y2I1 1504 aa47.45■■■■■ 5.19
ABCA3-204ENST00000566200 CCDC180Q9P1Z9 1646 aa42.59■■■■■ 4.41
ABCA3-204ENST00000566200 ABCC9O60706 1549 aa42.53■■■■■ 4.4
ABCA3-204ENST00000566200 RB1CC1Q8TDY2 1594 aa40.48■■■■■ 4.07
ABCA3-204ENST00000566200 NACADO15069 1562 aa40.22■■■■■ 4.03
ABCA3-204ENST00000566200 DNAJC5BQ9UF47 199 aa39.92■■■■□ 3.98
ABCA3-204ENST00000566200 DCAF8L2P0C7V8 631 aa39.91■■■■□ 3.98
ABCA3-204ENST00000566200 UNC13AQ9UPW8 1703 aa39.69■■■■□ 3.94
ABCA3-204ENST00000566200 MYO15BQ96JP2 1530 aa39.68■■■■□ 3.94
ABCA3-204ENST00000566200 PABPN1Q86U42 306 aaKnown RBP eCLIP39.58■■■■□ 3.93
ABCA3-204ENST00000566200 BICRAQ9NZM4 1560 aa39.4■■■■□ 3.9
ABCA3-204ENST00000566200 ZCCHC6Q5VYS8 1495 aaKnown RBP39.34■■■■□ 3.89
ABCA3-204ENST00000566200 DCAF1Q9Y4B6 1507 aa39.19■■■■□ 3.86
ABCA3-204ENST00000566200 SCRIBQ14160 1630 aa38.8■■■■□ 3.8
ABCA3-204ENST00000566200 SHROOM4Q9ULL8 1493 aa38.77■■■■□ 3.8
ABCA3-204ENST00000566200 CC2D2AQ9P2K1 1620 aa38.45■■■■□ 3.75
ABCA3-204ENST00000566200 EIF4G1Q04637 1599 aaKnown RBP38.37■■■■□ 3.73
ABCA3-204ENST00000566200 CECR2Q9BXF3 1484 aa38.29■■■■□ 3.72
ABCA3-204ENST00000566200 NCAPD3P42695 1498 aa37.13■■■■□ 3.54
ABCA3-204ENST00000566200 ATAD2BQ9ULI0 1458 aa37.03■■■■□ 3.52
ABCA3-204ENST00000566200 SMARCA4P51532 1647 aa37.03■■■■□ 3.52
ABCA3-204ENST00000566200 SMARCA2P51531 1590 aa36.9■■■■□ 3.5
ABCA3-204ENST00000566200 HMGXB3Q12766 1538 aa36.87■■■■□ 3.49
ABCA3-204ENST00000566200 BAZ1AQ9NRL2 1556 aaPredicted RBP36.81■■■■□ 3.48
ABCA3-204ENST00000566200 PEG3Q9GZU2 1588 aa36.67■■■■□ 3.46
ABCA3-204ENST00000566200 ERCC6Q03468 1493 aa36.66■■■■□ 3.46
ABCA3-204ENST00000566200 BAZ1BQ9UIG0 1483 aaKnown RBP36.64■■■■□ 3.46
ABCA3-204ENST00000566200 CUX2O14529 1486 aa36.62■■■■□ 3.45
ABCA3-204ENST00000566200 MROH2BQ7Z745 1585 aa36.59■■■■□ 3.45
ABCA3-204ENST00000566200 NESP48681 1621 aa36.59■■■■□ 3.45
ABCA3-204ENST00000566200 DNAJC5Q9H3Z4 198 aa36.57■■■■□ 3.44
ABCA3-204ENST00000566200 LAMC3Q9Y6N6 1575 aa36.29■■■■□ 3.4
ABCA3-204ENST00000566200 THOC2Q8NI27 1593 aaKnown RBP36.23■■■■□ 3.39
ABCA3-204ENST00000566200 WIZO95785 1651 aa36.16■■■■□ 3.38
ABCA3-204ENST00000566200 KIF21AQ7Z4S6 1674 aa36.13■■■■□ 3.37
ABCA3-204ENST00000566200 PDS5BQ9NTI5 1447 aa36.02■■■■□ 3.36
ABCA3-204ENST00000566200 CADPSQ9ULU8 1353 aa35.98■■■■□ 3.35
ABCA3-204ENST00000566200 RSF1Q96T23 1441 aaPredicted RBP35.81■■■■□ 3.32
ABCA3-204ENST00000566200 MRC2Q9UBG0 1479 aa35.76■■■■□ 3.32
ABCA3-204ENST00000566200 WDR62O43379 1518 aa35.71■■■■□ 3.31
ABCA3-204ENST00000566200 TOP2AP11388 1531 aaKnown RBP35.67■■■■□ 3.3
ABCA3-204ENST00000566200 CEP164Q9UPV0 1460 aa35.61■■■■□ 3.29
ABCA3-204ENST00000566200 CFTRP13569 1480 aa35.6■■■■□ 3.29
ABCA3-204ENST00000566200 FANCD2Q9BXW9 1451 aa35.59■■■■□ 3.29
ABCA3-204ENST00000566200 URB2Q14146 1524 aaKnown RBP35.34■■■■□ 3.25
ABCA3-204ENST00000566200 PRDM2Q13029 1718 aa35.31■■■■□ 3.24
ABCA3-204ENST00000566200 CCDC88BA6NC98 1476 aa35.27■■■■□ 3.24
ABCA3-204ENST00000566200 TRIM41Q8WV44 630 aa34.94■■■■□ 3.18
ABCA3-204ENST00000566200 TOPBP1Q92547 1522 aa34.94■■■■□ 3.18
ABCA3-204ENST00000566200 OSCARQ8IYS5 282 aa34.9■■■■□ 3.18
ABCA3-204ENST00000566200 ZNF608Q9ULD9 1512 aaPredicted RBP34.9■■■■□ 3.18
ABCA3-204ENST00000566200 IFT140Q96RY7 1462 aa34.9■■■■□ 3.18
ABCA3-204ENST00000566200 DNMBPQ6XZF7 1577 aa34.81■■■■□ 3.16
ABCA3-204ENST00000566200 ABCC8Q09428 1581 aa34.79■■■■□ 3.16
ABCA3-204ENST00000566200 EIF4G3O43432 1585 aaKnown RBP34.71■■■■□ 3.15
ABCA3-204ENST00000566200 TARBP1Q13395 1621 aaKnown RBP34.67■■■■□ 3.14
ABCA3-204ENST00000566200 POLA1P09884 1462 aaPredicted RBP34.58■■■■□ 3.13
ABCA3-204ENST00000566200 RIMBP3CA6NJZ7 1639 aa34.55■■■■□ 3.12
ABCA3-204ENST00000566200 RIMBP3BA6NNM3 1639 aa34.55■■■■□ 3.12
ABCA3-204ENST00000566200 RIMBP3Q9UFD9 1639 aa34.55■■■■□ 3.12
ABCA3-204ENST00000566200 AQRO60306 1485 aaKnown RBP eCLIP34.55■■■■□ 3.12
ABCA3-204ENST00000566200 CHD1O14646 1710 aa34.47■■■■□ 3.11
ABCA3-204ENST00000566200 RAD54L2Q9Y4B4 1467 aa34.46■■■■□ 3.11
ABCA3-204ENST00000566200 ARHGEF11O15085 1522 aa34.43■■■■□ 3.1
ABCA3-204ENST00000566200 SOGA1O94964 1423 aa34.38■■■■□ 3.09
ABCA3-204ENST00000566200 CUX1P39880 1505 aa34.37■■■■□ 3.09
ABCA3-204ENST00000566200 FGD5Q6ZNL6 1462 aa34.37■■■■□ 3.09
ABCA3-204ENST00000566200 TDRD9Q8NDG6 1382 aaKnown RBP34.33■■■■□ 3.09
ABCA3-204ENST00000566200 WDR97A6NE52 1622 aa34.26■■■■□ 3.07
ABCA3-204ENST00000566200 FBLN2P98095 1184 aa34.23■■■■□ 3.07
ABCA3-204ENST00000566200 SNAPC4Q5SXM2 1469 aa34.2■■■■□ 3.07
ABCA3-204ENST00000566200 SUPT5HO00267 1087 aaKnown RBP34.15■■■■□ 3.06
ABCA3-204ENST00000566200 ARAP1Q96P48 1450 aa34.11■■■■□ 3.05
ABCA3-204ENST00000566200 CYB5RLQ6IPT4 315 aa34.1■■■■□ 3.05
ABCA3-204ENST00000566200 GRIN2BQ13224 1484 aa34.09■■■■□ 3.05
ABCA3-204ENST00000566200 MAGI1Q96QZ7 1491 aaPredicted RBP34.09■■■■□ 3.05
ABCA3-204ENST00000566200 CLASP1Q7Z460 1538 aa34.06■■■■□ 3.04
ABCA3-204ENST00000566200 PBRM1Q86U86 1689 aa34.03■■■■□ 3.04
ABCA3-204ENST00000566200 CHMP7Q8WUX9 453 aaPredicted RBP33.98■■■■□ 3.03
ABCA3-204ENST00000566200 SYNJ2O15056 1496 aa33.98■■■■□ 3.03
ABCA3-204ENST00000566200 GAPVD1Q14C86 1478 aa33.98■■■■□ 3.03
ABCA3-204ENST00000566200 SYNJ1O43426 1573 aa33.98■■■■□ 3.03
ABCA3-204ENST00000566200 ABCA5Q8WWZ7 1642 aa33.97■■■■□ 3.03
ABCA3-204ENST00000566200 ABCA10Q8WWZ4 1543 aa33.97■■■■□ 3.03
ABCA3-204ENST00000566200 BIVM-ERCC5R4GMW8 1640 aa33.84■■■■□ 3.01
ABCA3-204ENST00000566200 TOP2BQ02880 1626 aa33.81■■■■□ 3
ABCA3-204ENST00000566200 WRNQ14191 1432 aaPredicted RBP eCLIP33.79■■■■□ 3
ABCA3-204ENST00000566200 ADAMTS12P58397 1594 aa33.69■■■□□ 2.98
ABCA3-204ENST00000566200 GRIN2AQ12879 1464 aa33.68■■■□□ 2.98
ABCA3-204ENST00000566200 TRHP20396 242 aaPredicted RBP33.67■■■□□ 2.98
ABCA3-204ENST00000566200 CEP170Q5SW79 1584 aa33.6■■■□□ 2.97
ABCA3-204ENST00000566200 NUP160Q12769 1436 aa33.57■■■□□ 2.96
ABCA3-204ENST00000566200 ERCC6L2Q5T890 1561 aa33.56■■■□□ 2.96
ABCA3-204ENST00000566200 FHAD1B1AJZ9 1412 aa33.53■■■□□ 2.96
ABCA3-204ENST00000566200 ERICH3Q5RHP9 1530 aa33.53■■■□□ 2.96
ABCA3-204ENST00000566200 SHROOM2Q13796 1616 aa33.46■■■□□ 2.95
ABCA3-204ENST00000566200 RUSC2Q8N2Y8 1516 aa33.23■■■□□ 2.91
ABCA3-204ENST00000566200 PRG4Q92954 1404 aaPredicted RBP33.21■■■□□ 2.91
ABCA3-204ENST00000566200 JPH4Q96JJ6 628 aa33.16■■■□□ 2.9
ABCA3-204ENST00000566200 IGF1RP08069 1367 aa33.11■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms