RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 HECW1Q76N89 1606 aa28.96■■■□□ 2.23
CLK3-217ENST00000566126 CEBPAP49715 358 aaPredicted RBP28.96■■■□□ 2.23
CLK3-217ENST00000566126 NUP153P49790 1475 aaKnown RBP28.94■■■□□ 2.22
CLK3-217ENST00000566126 LTBP4Q8N2S1 1624 aa28.93■■■□□ 2.22
CLK3-217ENST00000566126 SAMD9Q5K651 1589 aa28.92■■■□□ 2.22
CLK3-217ENST00000566126 PTPRTO14522 1441 aa28.91■■■□□ 2.22
CLK3-217ENST00000566126 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.9■■■□□ 2.223e-12■□□□□ 9.1
CLK3-217ENST00000566126 UHRF1BP1Q6BDS2 1440 aa28.88■■■□□ 2.21
CLK3-217ENST00000566126 SETD1BQ9UPS6 1966 aaKnown RBP28.88■■■□□ 2.21
CLK3-217ENST00000566126 IQSEC2Q5JU85 1478 aa28.87■■■□□ 2.21
CLK3-217ENST00000566126 ATP10AO60312 1499 aa28.84■■■□□ 2.21
CLK3-217ENST00000566126 PLEKHD1A6NEE1 506 aa28.82■■■□□ 2.2
CLK3-217ENST00000566126 C9orf84Q5VXU9 1444 aa28.82■■■□□ 2.2
CLK3-217ENST00000566126 SCAPERQ9BY12 1400 aa28.78■■■□□ 2.2
CLK3-217ENST00000566126 C3P01024 1663 aa28.7■■■□□ 2.19
CLK3-217ENST00000566126 PLCH2O75038 1416 aa28.68■■■□□ 2.18
CLK3-217ENST00000566126 NCOA1Q15788 1441 aa28.67■■■□□ 2.18
CLK3-217ENST00000566126 UBAP1LF5GYI3 381 aa28.61■■■□□ 2.17
CLK3-217ENST00000566126 TRAPPC8Q9Y2L5 1435 aa28.59■■■□□ 2.17
CLK3-217ENST00000566126 DIP2CQ9Y2E4 1556 aa28.56■■■□□ 2.16
CLK3-217ENST00000566126 KDM5CP41229 1560 aa28.55■■■□□ 2.16
CLK3-217ENST00000566126 MED1Q15648 1581 aaPredicted RBP28.55■■■□□ 2.16
CLK3-217ENST00000566126 REREQ9P2R6 1566 aa28.55■■■□□ 2.16
CLK3-217ENST00000566126 CDK13Q14004 1512 aaKnown RBP28.54■■■□□ 2.16
CLK3-217ENST00000566126 ZNF518AQ6AHZ1 1483 aa28.54■■■□□ 2.16
CLK3-217ENST00000566126 ZNF335Q9H4Z2 1342 aaPredicted RBP28.54■■■□□ 2.16
CLK3-217ENST00000566126 MYO5CQ9NQX4 1742 aa28.54■■■□□ 2.16
CLK3-217ENST00000566126 CAMSAP1Q5T5Y3 1602 aa28.54■■■□□ 2.16
CLK3-217ENST00000566126 RANGAP1P46060 587 aaPredicted RBP28.52■■■□□ 2.16
CLK3-217ENST00000566126 EFCAB2Q5VUJ9 269 aa28.52■■■□□ 2.16
CLK3-217ENST00000566126 AFAP1Q8N556 730 aa28.51■■■□□ 2.15
CLK3-217ENST00000566126 ABCA6Q8N139 1617 aa28.49■■■□□ 2.15
CLK3-217ENST00000566126 AGLP35573 1532 aa28.46■■■□□ 2.15
CLK3-217ENST00000566126 NCKAP5LQ9HCH0 1330 aa28.45■■■□□ 2.15
CLK3-217ENST00000566126 ESF1Q9H501 851 aaKnown RBP28.42■■■□□ 2.14
CLK3-217ENST00000566126 HSPA1LP34931 641 aa28.41■■■□□ 2.14
CLK3-217ENST00000566126 MYT1LQ9UL68 1186 aa28.4■■■□□ 2.14
CLK3-217ENST00000566126 MLH3Q9UHC1 1453 aa28.4■■■□□ 2.14
CLK3-217ENST00000566126 CSRNP3Q8WYN3 585 aa28.39■■■□□ 2.14
CLK3-217ENST00000566126 KIF14Q15058 1648 aa28.39■■■□□ 2.13
CLK3-217ENST00000566126 CNTLNQ9NXG0 1405 aa28.38■■■□□ 2.13
CLK3-217ENST00000566126 NPATQ14207 1427 aa28.37■■■□□ 2.13
CLK3-217ENST00000566126 ARHGAP5Q13017 1502 aa28.36■■■□□ 2.13
CLK3-217ENST00000566126 MROH2AA6NES4 1674 aa28.34■■■□□ 2.13
CLK3-217ENST00000566126 PLA2R1Q13018 1463 aa28.32■■■□□ 2.12
CLK3-217ENST00000566126 TCOF1Q13428 1488 aaKnown RBP28.31■■■□□ 2.12
CLK3-217ENST00000566126 ZNF142P52746 1687 aaPredicted RBP28.3■■■□□ 2.12
CLK3-217ENST00000566126 PKD2Q13563 968 aa28.29■■■□□ 2.12
CLK3-217ENST00000566126 SUPT6HQ7KZ85 1726 aaKnown RBP28.29■■■□□ 2.12
CLK3-217ENST00000566126 SCAF1Q9H7N4 1312 aaKnown RBP28.28■■■□□ 2.12
CLK3-217ENST00000566126 PIP4K2BP78356 416 aa28.28■■■□□ 2.12
CLK3-217ENST00000566126 CDC42BPBQ9Y5S2 1711 aa28.28■■■□□ 2.12
CLK3-217ENST00000566126 KIDINS220Q9ULH0 1771 aa28.27■■■□□ 2.12
CLK3-217ENST00000566126 MYO3AQ8NEV4 1616 aa28.27■■■□□ 2.12
CLK3-217ENST00000566126 ZMYM3Q14202 1370 aa28.26■■■□□ 2.12
CLK3-217ENST00000566126 PHF23Q9BUL5 403 aaPredicted RBP28.23■■■□□ 2.11
CLK3-217ENST00000566126 CEP170BQ9Y4F5 1589 aaPredicted RBP28.23■■■□□ 2.11
CLK3-217ENST00000566126 PPP6R1Q9UPN7 881 aa28.22■■■□□ 2.11
CLK3-217ENST00000566126 ITSN2Q9NZM3 1697 aa28.22■■■□□ 2.11
CLK3-217ENST00000566126 ABCC1P33527 1531 aa28.22■■■□□ 2.11
CLK3-217ENST00000566126 TROQ12816 1431 aaPredicted RBP28.21■■■□□ 2.11
CLK3-217ENST00000566126 TOM1O60784 492 aa28.19■■■□□ 2.1
CLK3-217ENST00000566126 CDK11AQ9UQ88 783 aaPredicted RBP28.19■■■□□ 2.1
CLK3-217ENST00000566126 ATP1B4Q9UN42 357 aaPredicted RBP28.17■■■□□ 2.1
CLK3-217ENST00000566126 CLTCQ00610 1675 aaKnown RBP28.16■■■□□ 2.1
CLK3-217ENST00000566126 PTPRKQ15262 1439 aa28.15■■■□□ 2.1
CLK3-217ENST00000566126 PREX2Q70Z35 1606 aa28.14■■■□□ 2.1
CLK3-217ENST00000566126 CPS1P31327 1500 aa28.13■■■□□ 2.09
CLK3-217ENST00000566126 ALKQ9UM73 1620 aa28.13■■■□□ 2.09
CLK3-217ENST00000566126 CLIP1P30622 1438 aa28.1■■■□□ 2.09
CLK3-217ENST00000566126 LRRIQ1Q96JM4 1722 aa28.09■■■□□ 2.09
CLK3-217ENST00000566126 FMN1Q68DA7 1419 aa28.09■■■□□ 2.09
CLK3-217ENST00000566126 SHANK2Q9UPX8 1470 aa28.08■■■□□ 2.09
CLK3-217ENST00000566126 SAMD9LQ8IVG5 1584 aa28.07■■■□□ 2.08
CLK3-217ENST00000566126 NEURL4Q96JN8 1562 aa28.06■■■□□ 2.08
CLK3-217ENST00000566126 DNMT1P26358 1616 aaKnown RBP28.06■■■□□ 2.08
CLK3-217ENST00000566126 POLR1AO95602 1720 aaPredicted RBP28.06■■■□□ 2.08
CLK3-217ENST00000566126 A2ML1A8K2U0 1454 aa28.02■■■□□ 2.08
CLK3-217ENST00000566126 EEA1Q15075 1411 aa28.02■■■□□ 2.08
CLK3-217ENST00000566126 RGS17Q9UGC6 210 aaPredicted RBP28.01■■■□□ 2.07
CLK3-217ENST00000566126 PLXNC1O60486 1568 aa28■■■□□ 2.07
CLK3-217ENST00000566126 CDC42BPAQ5VT25 1732 aa28■■■□□ 2.07
CLK3-217ENST00000566126 VWDEQ8N2E2 1590 aa27.99■■■□□ 2.07
CLK3-217ENST00000566126 ARHGAP35Q9NRY4 1499 aa27.96■■■□□ 2.07
CLK3-217ENST00000566126 SPAG9O60271 1321 aaKnown RBP27.93■■■□□ 2.06
CLK3-217ENST00000566126 SENP3Q9H4L4 574 aaPredicted RBP27.93■■■□□ 2.06
CLK3-217ENST00000566126 SYCP2Q9BX26 1530 aa27.92■■■□□ 2.06
CLK3-217ENST00000566126 GGT6Q6P531 493 aa27.92■■■□□ 2.06
CLK3-217ENST00000566126 ATP7AQ04656 1500 aa27.92■■■□□ 2.06
CLK3-217ENST00000566126 A2MP01023 1474 aa27.91■■■□□ 2.06
CLK3-217ENST00000566126 INO80Q9ULG1 1556 aaPredicted RBP27.9■■■□□ 2.06
CLK3-217ENST00000566126 HNRNPMP52272 730 aaKnown RBP eCLIP27.85■■■□□ 2.054e-10■■■■■ 38
CLK3-217ENST00000566126 ZNF777Q9ULD5 760 aaPredicted RBP27.85■■■□□ 2.05
CLK3-217ENST00000566126 STRCP1A6NGW2 1772 aa27.85■■■□□ 2.05
CLK3-217ENST00000566126 RNF17Q9BXT8 1623 aaKnown RBP27.81■■■□□ 2.04
CLK3-217ENST00000566126 ANKLE2Q86XL3 938 aa27.8■■■□□ 2.04
CLK3-217ENST00000566126 TNRQ92752 1358 aa27.8■■■□□ 2.04
CLK3-217ENST00000566126 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.8■■■□□ 2.04
CLK3-217ENST00000566126 MED14O60244 1454 aa27.8■■■□□ 2.04
CLK3-217ENST00000566126 LRRC7Q96NW7 1537 aa27.8■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms