RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 NISCHQ9Y2I1 1504 aa43.45■■■■■ 4.55
CLK3-217ENST00000566126 ABCC9O60706 1549 aa40.62■■■■■ 4.09
CLK3-217ENST00000566126 CCDC180Q9P1Z9 1646 aa39.49■■■■□ 3.91
CLK3-217ENST00000566126 DNAJC5BQ9UF47 199 aa39.19■■■■□ 3.86
CLK3-217ENST00000566126 RB1CC1Q8TDY2 1594 aa38.12■■■■□ 3.69
CLK3-217ENST00000566126 PABPN1Q86U42 306 aaKnown RBP eCLIP37.62■■■■□ 3.61
CLK3-217ENST00000566126 NACADO15069 1562 aa37.59■■■■□ 3.61
CLK3-217ENST00000566126 UNC13AQ9UPW8 1703 aa37.37■■■■□ 3.57
CLK3-217ENST00000566126 BICRAQ9NZM4 1560 aa37.14■■■■□ 3.54
CLK3-217ENST00000566126 DCAF8L2P0C7V8 631 aa37.09■■■■□ 3.53
CLK3-217ENST00000566126 DNAJC5Q9H3Z4 198 aa36.77■■■■□ 3.48
CLK3-217ENST00000566126 MYO15BQ96JP2 1530 aa36.69■■■■□ 3.46
CLK3-217ENST00000566126 CECR2Q9BXF3 1484 aa36.69■■■■□ 3.46
CLK3-217ENST00000566126 CC2D2AQ9P2K1 1620 aa36.65■■■■□ 3.46
CLK3-217ENST00000566126 SHROOM4Q9ULL8 1493 aa36.43■■■■□ 3.42
CLK3-217ENST00000566126 EIF4G1Q04637 1599 aaKnown RBP36.28■■■■□ 3.4
CLK3-217ENST00000566126 SCRIBQ14160 1630 aa35.92■■■■□ 3.34
CLK3-217ENST00000566126 DCAF1Q9Y4B6 1507 aa35.81■■■■□ 3.32
CLK3-217ENST00000566126 ZCCHC6Q5VYS8 1495 aaKnown RBP35.77■■■■□ 3.32
CLK3-217ENST00000566126 CUX2O14529 1486 aa35.45■■■■□ 3.27
CLK3-217ENST00000566126 ERCC6Q03468 1493 aa35.09■■■■□ 3.21
CLK3-217ENST00000566126 NCAPD3P42695 1498 aa34.73■■■■□ 3.15
CLK3-217ENST00000566126 TRIM41Q8WV44 630 aa34.64■■■■□ 3.14
CLK3-217ENST00000566126 NESP48681 1621 aa34.59■■■■□ 3.13
CLK3-217ENST00000566126 THOC2Q8NI27 1593 aaKnown RBP34.48■■■■□ 3.11
CLK3-217ENST00000566126 ATAD2BQ9ULI0 1458 aa34.47■■■■□ 3.11
CLK3-217ENST00000566126 HMGXB3Q12766 1538 aa34.36■■■■□ 3.09
CLK3-217ENST00000566126 SMARCA2P51531 1590 aa34.27■■■■□ 3.08
CLK3-217ENST00000566126 SMARCA4P51532 1647 aa34.15■■■■□ 3.06
CLK3-217ENST00000566126 LAMC3Q9Y6N6 1575 aa34.12■■■■□ 3.05
CLK3-217ENST00000566126 KIF21AQ7Z4S6 1674 aa34.12■■■■□ 3.05
CLK3-217ENST00000566126 BAZ1BQ9UIG0 1483 aaKnown RBP34.04■■■■□ 3.04
CLK3-217ENST00000566126 PDS5BQ9NTI5 1447 aa33.92■■■■□ 3.02
CLK3-217ENST00000566126 PEG3Q9GZU2 1588 aa33.83■■■■□ 3.01
CLK3-217ENST00000566126 BAZ1AQ9NRL2 1556 aaPredicted RBP33.78■■■■□ 3
CLK3-217ENST00000566126 MRC2Q9UBG0 1479 aa33.74■■■□□ 2.99
CLK3-217ENST00000566126 WDR62O43379 1518 aa33.72■■■□□ 2.99
CLK3-217ENST00000566126 OSCARQ8IYS5 282 aa33.61■■■□□ 2.97
CLK3-217ENST00000566126 CADPSQ9ULU8 1353 aa33.6■■■□□ 2.97
CLK3-217ENST00000566126 MROH2BQ7Z745 1585 aa33.49■■■□□ 2.95
CLK3-217ENST00000566126 RIMBP3CA6NJZ7 1639 aa33.39■■■□□ 2.93
CLK3-217ENST00000566126 RIMBP3BA6NNM3 1639 aa33.39■■■□□ 2.93
CLK3-217ENST00000566126 RIMBP3Q9UFD9 1639 aa33.39■■■□□ 2.93
CLK3-217ENST00000566126 CEP164Q9UPV0 1460 aa33.35■■■□□ 2.93
CLK3-217ENST00000566126 FANCD2Q9BXW9 1451 aa33.23■■■□□ 2.91
CLK3-217ENST00000566126 ARHGEF11O15085 1522 aa33.13■■■□□ 2.89
CLK3-217ENST00000566126 URB2Q14146 1524 aaKnown RBP33.07■■■□□ 2.89
CLK3-217ENST00000566126 WIZO95785 1651 aa33.04■■■□□ 2.88
CLK3-217ENST00000566126 CFTRP13569 1480 aa32.99■■■□□ 2.87
CLK3-217ENST00000566126 CYB5RLQ6IPT4 315 aa32.92■■■□□ 2.86
CLK3-217ENST00000566126 TRHP20396 242 aaPredicted RBP32.89■■■□□ 2.86
CLK3-217ENST00000566126 ZNF608Q9ULD9 1512 aaPredicted RBP32.86■■■□□ 2.85
CLK3-217ENST00000566126 AEBP2Q6ZN18 517 aaPredicted RBP32.76■■■□□ 2.83
CLK3-217ENST00000566126 ARAP1Q96P48 1450 aa32.75■■■□□ 2.83
CLK3-217ENST00000566126 IFT140Q96RY7 1462 aa32.74■■■□□ 2.83
CLK3-217ENST00000566126 EIF4G3O43432 1585 aaKnown RBP32.6■■■□□ 2.81
CLK3-217ENST00000566126 CHD1O14646 1710 aa32.6■■■□□ 2.81
CLK3-217ENST00000566126 PRDM2Q13029 1718 aa32.6■■■□□ 2.81
CLK3-217ENST00000566126 RSF1Q96T23 1441 aaPredicted RBP32.51■■■□□ 2.8
CLK3-217ENST00000566126 TOP2AP11388 1531 aaKnown RBP32.51■■■□□ 2.79
CLK3-217ENST00000566126 TOPBP1Q92547 1522 aa32.49■■■□□ 2.79
CLK3-217ENST00000566126 AQRO60306 1485 aaKnown RBP eCLIP32.39■■■□□ 2.789e-8■■■■■ 31.4
CLK3-217ENST00000566126 FBLN2P98095 1184 aa32.33■■■□□ 2.77
CLK3-217ENST00000566126 TARBP1Q13395 1621 aaKnown RBP32.32■■■□□ 2.76
CLK3-217ENST00000566126 ABCC8Q09428 1581 aa32.28■■■□□ 2.76
CLK3-217ENST00000566126 DNMBPQ6XZF7 1577 aa32.26■■■□□ 2.75
CLK3-217ENST00000566126 CLASP1Q7Z460 1538 aa32.19■■■□□ 2.74
CLK3-217ENST00000566126 CCDC88BA6NC98 1476 aa32.16■■■□□ 2.74
CLK3-217ENST00000566126 POLA1P09884 1462 aaPredicted RBP32.09■■■□□ 2.73
CLK3-217ENST00000566126 SNAPC4Q5SXM2 1469 aa32.01■■■□□ 2.71
CLK3-217ENST00000566126 SYNJ1O43426 1573 aa32.01■■■□□ 2.71
CLK3-217ENST00000566126 RAD54L2Q9Y4B4 1467 aa32■■■□□ 2.71
CLK3-217ENST00000566126 TDRD9Q8NDG6 1382 aaKnown RBP32■■■□□ 2.71
CLK3-217ENST00000566126 CHMP7Q8WUX9 453 aaPredicted RBP31.91■■■□□ 2.7
CLK3-217ENST00000566126 GAPVD1Q14C86 1478 aa31.9■■■□□ 2.7
CLK3-217ENST00000566126 SOGA1O94964 1423 aa31.88■■■□□ 2.69
CLK3-217ENST00000566126 MAGI1Q96QZ7 1491 aaPredicted RBP31.85■■■□□ 2.69
CLK3-217ENST00000566126 WDR97A6NE52 1622 aa31.85■■■□□ 2.69
CLK3-217ENST00000566126 SYNJ2O15056 1496 aa31.78■■■□□ 2.68
CLK3-217ENST00000566126 GRIN2BQ13224 1484 aa31.74■■■□□ 2.67
CLK3-217ENST00000566126 FGD5Q6ZNL6 1462 aa31.72■■■□□ 2.67
CLK3-217ENST00000566126 ERCC6L2Q5T890 1561 aa31.64■■■□□ 2.65
CLK3-217ENST00000566126 KIF13AQ9H1H9 1805 aa31.59■■■□□ 2.65
CLK3-217ENST00000566126 PBRM1Q86U86 1689 aa31.58■■■□□ 2.65
CLK3-217ENST00000566126 ILDR1Q86SU0 546 aaPredicted RBP31.58■■■□□ 2.65
CLK3-217ENST00000566126 CUX1P39880 1505 aa31.52■■■□□ 2.64
CLK3-217ENST00000566126 CEP170Q5SW79 1584 aa31.43■■■□□ 2.62
CLK3-217ENST00000566126 KDM4FA0A1W2PPD8 638 aa31.37■■■□□ 2.61
CLK3-217ENST00000566126 ABCA5Q8WWZ7 1642 aa31.37■■■□□ 2.61
CLK3-217ENST00000566126 GRIN2AQ12879 1464 aa31.35■■■□□ 2.61
CLK3-217ENST00000566126 SHROOM2Q13796 1616 aa31.32■■■□□ 2.6
CLK3-217ENST00000566126 NUP160Q12769 1436 aa31.31■■■□□ 2.6
CLK3-217ENST00000566126 ABCA10Q8WWZ4 1543 aa31.29■■■□□ 2.6
CLK3-217ENST00000566126 ADAMTS12P58397 1594 aa31.21■■■□□ 2.59
CLK3-217ENST00000566126 ABCC10Q5T3U5 1492 aa31.21■■■□□ 2.59
CLK3-217ENST00000566126 FAM69CQ0P6D2 419 aa31.2■■■□□ 2.59
CLK3-217ENST00000566126 DIP2BQ9P265 1576 aa31.12■■■□□ 2.57
CLK3-217ENST00000566126 KDM6BO15054 1643 aa31.12■■■□□ 2.57
CLK3-217ENST00000566126 MAPKBP1O60336 1514 aa31.07■■■□□ 2.56
CLK3-217ENST00000566126 PRG4Q92954 1404 aaPredicted RBP31.07■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms