RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PREX2Q70Z35 1606 aa14.7□□□□□ -0.06
VPS35-206ENST00000565228 AKNAQ7Z591 1439 aa14.69□□□□□ -0.06
VPS35-206ENST00000565228 RAPGEF3O95398 923 aa14.69□□□□□ -0.06
VPS35-206ENST00000565228 EHBP1L1Q8N3D4 1523 aa14.68□□□□□ -0.06
VPS35-206ENST00000565228 ARHGEF12Q9NZN5 1544 aa14.68□□□□□ -0.06
VPS35-206ENST00000565228 RICTORQ6R327 1708 aa14.68□□□□□ -0.06
VPS35-206ENST00000565228 LRRC9Q6ZRR7 1453 aa14.68□□□□□ -0.06
VPS35-206ENST00000565228 MTUS2Q5JR59 1369 aa14.67□□□□□ -0.06
VPS35-206ENST00000565228 MAP3K1Q13233 1512 aa14.66□□□□□ -0.06
VPS35-206ENST00000565228 ARHGAP5Q13017 1502 aa14.65□□□□□ -0.06
VPS35-206ENST00000565228 SAMD9LQ8IVG5 1584 aa14.64□□□□□ -0.07
VPS35-206ENST00000565228 NCOA2Q15596 1464 aa14.64□□□□□ -0.07
VPS35-206ENST00000565228 ADGRL1O94910 1474 aa14.63□□□□□ -0.07
VPS35-206ENST00000565228 SCAPERQ9BY12 1400 aa14.62□□□□□ -0.07
VPS35-206ENST00000565228 SIGLEC1Q9BZZ2 1709 aa14.62□□□□□ -0.07
VPS35-206ENST00000565228 CFAP74Q9C0B2 1584 aa14.62□□□□□ -0.07
VPS35-206ENST00000565228 ZNF644Q9H582 1327 aaPredicted RBP14.62□□□□□ -0.07
VPS35-206ENST00000565228 ABCC1P33527 1531 aa14.61□□□□□ -0.07
VPS35-206ENST00000565228 PHLDB1Q86UU1 1377 aa14.61□□□□□ -0.07
VPS35-206ENST00000565228 TRAPPC8Q9Y2L5 1435 aa14.61□□□□□ -0.07
VPS35-206ENST00000565228 DENND4BO75064 1496 aaPredicted RBP14.61□□□□□ -0.07
VPS35-206ENST00000565228 SUPT6HQ7KZ85 1726 aaKnown RBP14.61□□□□□ -0.07
VPS35-206ENST00000565228 EFCAB2Q5VUJ9 269 aa14.6□□□□□ -0.07
VPS35-206ENST00000565228 ITSN2Q9NZM3 1697 aa14.6□□□□□ -0.07
VPS35-206ENST00000565228 POGZQ7Z3K3 1410 aa14.59□□□□□ -0.07
VPS35-206ENST00000565228 CCNB3Q8WWL7 1395 aa14.59□□□□□ -0.07
VPS35-206ENST00000565228 YEATS2Q9ULM3 1422 aa14.58□□□□□ -0.07
VPS35-206ENST00000565228 AFAP1Q8N556 730 aa14.58□□□□□ -0.08
VPS35-206ENST00000565228 ZMYM4Q5VZL5 1548 aa14.57□□□□□ -0.08
VPS35-206ENST00000565228 SYCP2Q9BX26 1530 aa14.56□□□□□ -0.08
VPS35-206ENST00000565228 KDM5CP41229 1560 aa14.56□□□□□ -0.08
VPS35-206ENST00000565228 ZNF777Q9ULD5 760 aaPredicted RBP14.55□□□□□ -0.08
VPS35-206ENST00000565228 MBD5Q9P267 1494 aa14.55□□□□□ -0.08
VPS35-206ENST00000565228 HNRNPMP52272 730 aaKnown RBP eCLIP14.54□□□□□ -0.08
VPS35-206ENST00000565228 PPARGC1BQ86YN6 1023 aaKnown RBP14.54□□□□□ -0.08
VPS35-206ENST00000565228 CFDP1Q9UEE9 299 aaPredicted RBP14.54□□□□□ -0.08
VPS35-206ENST00000565228 ARHGEF40Q8TER5 1519 aa14.52□□□□□ -0.08
VPS35-206ENST00000565228 KIDINS220Q9ULH0 1771 aa14.52□□□□□ -0.09
VPS35-206ENST00000565228 CAMSAP2Q08AD1 1489 aa14.51□□□□□ -0.09
VPS35-206ENST00000565228 ABCA6Q8N139 1617 aa14.51□□□□□ -0.09
VPS35-206ENST00000565228 HECW2Q9P2P5 1572 aa14.51□□□□□ -0.09
VPS35-206ENST00000565228 MYOM3Q5VTT5 1437 aa14.5□□□□□ -0.09
VPS35-206ENST00000565228 KIAA1107Q9UPP5 1409 aa14.5□□□□□ -0.09
VPS35-206ENST00000565228 ZFYVE16Q7Z3T8 1539 aa14.5□□□□□ -0.09
VPS35-206ENST00000565228 ZNF518AQ6AHZ1 1483 aa14.5□□□□□ -0.09
VPS35-206ENST00000565228 DIP2CQ9Y2E4 1556 aa14.49□□□□□ -0.09
VPS35-206ENST00000565228 MLH3Q9UHC1 1453 aa14.48□□□□□ -0.09
VPS35-206ENST00000565228 INO80Q9ULG1 1556 aaPredicted RBP14.47□□□□□ -0.09
VPS35-206ENST00000565228 MAGI2Q86UL8 1455 aa14.46□□□□□ -0.09
VPS35-206ENST00000565228 APLP2Q06481 763 aa14.45□□□□□ -0.1
VPS35-206ENST00000565228 MIA2Q96PC5 1412 aa14.44□□□□□ -0.1
VPS35-206ENST00000565228 PTPN23Q9H3S7 1636 aa14.44□□□□□ -0.1
VPS35-206ENST00000565228 ATP10AO60312 1499 aa14.44□□□□□ -0.1
VPS35-206ENST00000565228 PLEKHH2Q8IVE3 1493 aa14.44□□□□□ -0.1
VPS35-206ENST00000565228 ADAMTSL3P82987 1691 aa14.43□□□□□ -0.1
VPS35-206ENST00000565228 FGD6Q6ZV73 1430 aa14.43□□□□□ -0.1
VPS35-206ENST00000565228 BCORL1Q5H9F3 1711 aa14.43□□□□□ -0.1
VPS35-206ENST00000565228 TCOF1Q13428 1488 aaKnown RBP14.43□□□□□ -0.1
VPS35-206ENST00000565228 ARHGEF5Q12774 1597 aa14.43□□□□□ -0.1
VPS35-206ENST00000565228 ATP7AQ04656 1500 aa14.42□□□□□ -0.1
VPS35-206ENST00000565228 C9orf84Q5VXU9 1444 aa14.41□□□□□ -0.1
VPS35-206ENST00000565228 CCDC141Q6ZP82 1450 aa14.4□□□□□ -0.1
VPS35-206ENST00000565228 ABCC5O15440 1437 aa14.4□□□□□ -0.1
VPS35-206ENST00000565228 SPAG9O60271 1321 aaKnown RBP14.4□□□□□ -0.1
VPS35-206ENST00000565228 ADGBQ8N7X0 1667 aa14.39□□□□□ -0.11
VPS35-206ENST00000565228 REREQ9P2R6 1566 aa14.39□□□□□ -0.11
VPS35-206ENST00000565228 MADDQ8WXG6 1647 aa14.38□□□□□ -0.11
VPS35-206ENST00000565228 PLXNC1O60486 1568 aa14.38□□□□□ -0.11
VPS35-206ENST00000565228 CROCC2H7BZ55 1655 aa14.37□□□□□ -0.11
VPS35-206ENST00000565228 PTPRKQ15262 1439 aa14.37□□□□□ -0.11
VPS35-206ENST00000565228 MAST1Q9Y2H9 1570 aa14.36□□□□□ -0.11
VPS35-206ENST00000565228 DNMT1P26358 1616 aaKnown RBP14.36□□□□□ -0.11
VPS35-206ENST00000565228 RTEL1-TNFRSF6BF6WH68 1400 aa14.35□□□□□ -0.11
VPS35-206ENST00000565228 FBXO41Q8TF61 875 aa14.35□□□□□ -0.11
VPS35-206ENST00000565228 AGLP35573 1532 aa14.35□□□□□ -0.11
VPS35-206ENST00000565228 DAPK1P53355 1430 aa14.34□□□□□ -0.11
VPS35-206ENST00000565228 MLECQ14165 292 aa14.34□□□□□ -0.11
VPS35-206ENST00000565228 MYT1LQ9UL68 1186 aa14.34□□□□□ -0.11
VPS35-206ENST00000565228 ARID4BQ4LE39 1312 aaPredicted RBP14.34□□□□□ -0.11
VPS35-206ENST00000565228 A2MP01023 1474 aa14.33□□□□□ -0.12
VPS35-206ENST00000565228 RIMS1Q86UR5 1692 aaKnown RBP14.33□□□□□ -0.12
VPS35-206ENST00000565228 FER1L4A9Z1Z3 1794 aa14.3□□□□□ -0.12
VPS35-206ENST00000565228 RSPH4AQ5TD94 716 aa14.3□□□□□ -0.12
VPS35-206ENST00000565228 DHX29Q7Z478 1369 aaKnown RBP14.3□□□□□ -0.12
VPS35-206ENST00000565228 PTPRMP28827 1452 aa14.3□□□□□ -0.12
VPS35-206ENST00000565228 FAM50AQ14320 339 aaKnown RBP14.29□□□□□ -0.12
VPS35-206ENST00000565228 RRBP1Q9P2E9 1410 aaKnown RBP14.29□□□□□ -0.12
VPS35-206ENST00000565228 SHANK2Q9UPX8 1470 aa14.29□□□□□ -0.12
VPS35-206ENST00000565228 CHIC2Q9UKJ5 165 aa14.28□□□□□ -0.12
VPS35-206ENST00000565228 MROH1Q8NDA8 1641 aa14.26□□□□□ -0.13
VPS35-206ENST00000565228 TSPY4P0CV99 314 aa14.26□□□□□ -0.13
VPS35-206ENST00000565228 TSPY10P0CW01 314 aa14.26□□□□□ -0.13
VPS35-206ENST00000565228 NCOA1Q15788 1441 aa14.25□□□□□ -0.13
VPS35-206ENST00000565228 CEBPAP49715 358 aaPredicted RBP14.25□□□□□ -0.13
VPS35-206ENST00000565228 RRP7BPQ9NSQ0 103 aa14.25□□□□□ -0.13
VPS35-206ENST00000565228 ADGRL2O95490 1459 aa14.25□□□□□ -0.13
VPS35-206ENST00000565228 C3P01024 1663 aa14.23□□□□□ -0.13
VPS35-206ENST00000565228 CLTCQ00610 1675 aaKnown RBP14.23□□□□□ -0.13
VPS35-206ENST00000565228 KIF15Q9NS87 1388 aa14.22□□□□□ -0.13
VPS35-206ENST00000565228 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms