RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 UACAQ9BZF9 1416 aa13.93□□□□□ -0.18
RNF40-204ENST00000563683 ZBED9Q6R2W3 1325 aa13.92□□□□□ -0.18
RNF40-204ENST00000563683 CFAP43Q8NDM7 1665 aa13.91□□□□□ -0.18
RNF40-204ENST00000563683 NCOA2Q15596 1464 aa13.91□□□□□ -0.18
RNF40-204ENST00000563683 CC2D1BQ5T0F9 858 aaKnown RBP13.9□□□□□ -0.18
RNF40-204ENST00000563683 CARMIL2Q6F5E8 1435 aa13.9□□□□□ -0.18
RNF40-204ENST00000563683 WDR43Q15061 677 aaKnown RBP eCLIP13.9□□□□□ -0.18
RNF40-204ENST00000563683 ZBTB47Q9UFB7 747 aaPredicted RBP13.89□□□□□ -0.19
RNF40-204ENST00000563683 FYCO1Q9BQS8 1478 aa13.89□□□□□ -0.19
RNF40-204ENST00000563683 IPO9Q96P70 1041 aaKnown RBP13.89□□□□□ -0.19
RNF40-204ENST00000563683 WASHC2AQ641Q2 1341 aa13.88□□□□□ -0.19
RNF40-204ENST00000563683 ANKRD30AQ9BXX3 1397 aa13.88□□□□□ -0.19
RNF40-204ENST00000563683 CNTLNQ9NXG0 1405 aa13.87□□□□□ -0.19
RNF40-204ENST00000563683 HFM1A2PYH4 1435 aa13.87□□□□□ -0.19
RNF40-204ENST00000563683 PRKRIP1Q9H875 184 aaPredicted RBP13.86□□□□□ -0.19
RNF40-204ENST00000563683 PAK3O75914 559 aaPredicted RBP13.85□□□□□ -0.19
RNF40-204ENST00000563683 PCF11O94913 1555 aaKnown RBP13.85□□□□□ -0.19
RNF40-204ENST00000563683 KNSTRNQ9Y448 316 aa13.84□□□□□ -0.19
RNF40-204ENST00000563683 ST20-MTHFSA0A0A6YYL1 179 aa13.82□□□□□ -0.2
RNF40-204ENST00000563683 ABCA10Q8WWZ4 1543 aa13.82□□□□□ -0.2
RNF40-204ENST00000563683 DNMBPQ6XZF7 1577 aa13.82□□□□□ -0.2
RNF40-204ENST00000563683 PTPN23Q9H3S7 1636 aa13.8□□□□□ -0.2
RNF40-204ENST00000563683 EFCAB5A4FU69 1503 aa13.8□□□□□ -0.2
RNF40-204ENST00000563683 ROCK2O75116 1388 aaKnown RBP13.79□□□□□ -0.2
RNF40-204ENST00000563683 CCDC184Q52MB2 194 aa13.79□□□□□ -0.2
RNF40-204ENST00000563683 SMG6Q86US8 1419 aaKnown RBP13.78□□□□□ -0.2
RNF40-204ENST00000563683 STAG3Q9UJ98 1225 aa13.78□□□□□ -0.2
RNF40-204ENST00000563683 ANO8Q9HCE9 1232 aaPredicted RBP13.78□□□□□ -0.2
RNF40-204ENST00000563683 CCDC7Q96M83 1385 aa13.78□□□□□ -0.2
RNF40-204ENST00000563683 NAIPQ13075 1403 aa13.77□□□□□ -0.2
RNF40-204ENST00000563683 TMF1P82094 1093 aa13.77□□□□□ -0.2
RNF40-204ENST00000563683 NBPF8Q3BBV2 869 aa13.77□□□□□ -0.2
RNF40-204ENST00000563683 USP35Q9P2H5 1018 aa13.76□□□□□ -0.21
RNF40-204ENST00000563683 NUDCQ9Y266 331 aa13.76□□□□□ -0.21
RNF40-204ENST00000563683 KDM5BQ9UGL1 1544 aa13.76□□□□□ -0.21
RNF40-204ENST00000563683 KIF7Q2M1P5 1343 aa13.76□□□□□ -0.21
RNF40-204ENST00000563683 TNNT2P45379 298 aaPredicted RBP13.75□□□□□ -0.21
RNF40-204ENST00000563683 NEUROD2Q15784 382 aa13.75□□□□□ -0.21
RNF40-204ENST00000563683 NCOA1Q15788 1441 aa13.75□□□□□ -0.21
RNF40-204ENST00000563683 GRIN2BQ13224 1484 aa13.75□□□□□ -0.21
RNF40-204ENST00000563683 USP47Q96K76 1375 aa13.75□□□□□ -0.21
RNF40-204ENST00000563683 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.74□□□□□ -0.21
RNF40-204ENST00000563683 PRDM2Q13029 1718 aa13.73□□□□□ -0.21
RNF40-204ENST00000563683 CDCA8Q53HL2 280 aa13.73□□□□□ -0.21
RNF40-204ENST00000563683 EFCAB2Q5VUJ9 269 aa13.73□□□□□ -0.21
RNF40-204ENST00000563683 PTPRKQ15262 1439 aa13.73□□□□□ -0.21
RNF40-204ENST00000563683 PTPRGP23470 1445 aa13.72□□□□□ -0.21
RNF40-204ENST00000563683 RNF123Q5XPI4 1314 aa13.72□□□□□ -0.21
RNF40-204ENST00000563683 URB2Q14146 1524 aaKnown RBP13.72□□□□□ -0.21
RNF40-204ENST00000563683 NEFMP07197 916 aa13.72□□□□□ -0.21
RNF40-204ENST00000563683 CDK13Q14004 1512 aaKnown RBP13.72□□□□□ -0.21
RNF40-204ENST00000563683 PLPPR3Q6T4P5 718 aa13.71□□□□□ -0.21
RNF40-204ENST00000563683 PRG4Q92954 1404 aaPredicted RBP13.71□□□□□ -0.22
RNF40-204ENST00000563683 PPM1GO15355 546 aaPredicted RBP13.7□□□□□ -0.22
RNF40-204ENST00000563683 ESF1Q9H501 851 aaKnown RBP13.7□□□□□ -0.22
RNF40-204ENST00000563683 KTN1Q86UP2 1357 aaKnown RBP13.7□□□□□ -0.22
RNF40-204ENST00000563683 AKNAQ7Z591 1439 aa13.7□□□□□ -0.22
RNF40-204ENST00000563683 RALBP1Q15311 655 aa13.69□□□□□ -0.22
RNF40-204ENST00000563683 C11orf95C9JLR9 678 aaPredicted RBP13.69□□□□□ -0.22
RNF40-204ENST00000563683 TCERG1O14776 1098 aaKnown RBP13.69□□□□□ -0.22
RNF40-204ENST00000563683 RSPH4AQ5TD94 716 aa13.68□□□□□ -0.22
RNF40-204ENST00000563683 EHBP1L1Q8N3D4 1523 aa13.68□□□□□ -0.22
RNF40-204ENST00000563683 GGT6Q6P531 493 aa13.68□□□□□ -0.22
RNF40-204ENST00000563683 ANKRD50Q9ULJ7 1429 aa13.68□□□□□ -0.22
RNF40-204ENST00000563683 EPRSP07814 1512 aaKnown RBP13.67□□□□□ -0.22
RNF40-204ENST00000563683 KIF3BO15066 747 aa13.67□□□□□ -0.22
RNF40-204ENST00000563683 RCAN3Q9UKA8 241 aa13.67□□□□□ -0.22
RNF40-204ENST00000563683 IL27Q8NEV9 243 aa13.67□□□□□ -0.22
RNF40-204ENST00000563683 NLRP13Q86W25 1043 aa13.66□□□□□ -0.22
RNF40-204ENST00000563683 KIF15Q9NS87 1388 aa13.65□□□□□ -0.22
RNF40-204ENST00000563683 CCDC144AA2RUR9 1427 aa13.65□□□□□ -0.22
RNF40-204ENST00000563683 MIA2Q96PC5 1412 aa13.65□□□□□ -0.22
RNF40-204ENST00000563683 HECW1Q76N89 1606 aa13.65□□□□□ -0.22
RNF40-204ENST00000563683 PANK3Q9H999 370 aa13.65□□□□□ -0.22
RNF40-204ENST00000563683 MRC2Q9UBG0 1479 aa13.64□□□□□ -0.23
RNF40-204ENST00000563683 SAFB2Q14151 953 aaKnown RBP eCLIP13.64□□□□□ -0.23
RNF40-204ENST00000563683 SPAG9O60271 1321 aaKnown RBP13.64□□□□□ -0.23
RNF40-204ENST00000563683 RGS3P49796 1198 aa13.64□□□□□ -0.23
RNF40-204ENST00000563683 SLC24A1O60721 1099 aa13.64□□□□□ -0.23
RNF40-204ENST00000563683 SUPT6HQ7KZ85 1726 aaKnown RBP13.63□□□□□ -0.23
RNF40-204ENST00000563683 LAMC3Q9Y6N6 1575 aa13.63□□□□□ -0.23
RNF40-204ENST00000563683 SNAPC4Q5SXM2 1469 aa13.63□□□□□ -0.23
RNF40-204ENST00000563683 MS4A1P11836 297 aa13.62□□□□□ -0.23
RNF40-204ENST00000563683 RTN4Q9NQC3 1192 aaKnown RBP13.62□□□□□ -0.23
RNF40-204ENST00000563683 CUL7Q14999 1698 aa13.62□□□□□ -0.23
RNF40-204ENST00000563683 DDRGK1Q96HY6 314 aa13.62□□□□□ -0.23
RNF40-204ENST00000563683 DAPK1P53355 1430 aa13.62□□□□□ -0.23
RNF40-204ENST00000563683 MYBBP1AQ9BQG0 1328 aaKnown RBP13.62□□□□□ -0.23
RNF40-204ENST00000563683 FRAT1Q92837 279 aaPredicted RBP13.62□□□□□ -0.23
RNF40-204ENST00000563683 LAS1LQ9Y4W2 734 aaKnown RBP13.61□□□□□ -0.23
RNF40-204ENST00000563683 ABCA5Q8WWZ7 1642 aa13.61□□□□□ -0.23
RNF40-204ENST00000563683 KANK1Q14678 1352 aa13.61□□□□□ -0.23
RNF40-204ENST00000563683 WASHC2CQ9Y4E1 1318 aa13.6□□□□□ -0.23
RNF40-204ENST00000563683 PDE4AP27815 886 aa13.6□□□□□ -0.23
RNF40-204ENST00000563683 NBPF1Q3BBV0 1214 aa13.59□□□□□ -0.23
RNF40-204ENST00000563683 TROQ12816 1431 aaPredicted RBP13.59□□□□□ -0.23
RNF40-204ENST00000563683 IFT140Q96RY7 1462 aa13.59□□□□□ -0.23
RNF40-204ENST00000563683 GCC2Q8IWJ2 1684 aa13.59□□□□□ -0.23
RNF40-204ENST00000563683 THOC2Q8NI27 1593 aaKnown RBP13.59□□□□□ -0.23
RNF40-204ENST00000563683 PLIN1O60240 522 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 445 ms