RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 PTPRMP28827 1452 aa25.4■■□□□ 1.66
USB1-208ENST00000563207 ZMYM4Q5VZL5 1548 aa25.39■■□□□ 1.66
USB1-208ENST00000563207 CASKIN1Q8WXD9 1431 aa25.38■■□□□ 1.65
USB1-208ENST00000563207 ZFYVE16Q7Z3T8 1539 aa25.36■■□□□ 1.65
USB1-208ENST00000563207 POGZQ7Z3K3 1410 aa25.36■■□□□ 1.65
USB1-208ENST00000563207 EFCAB2Q5VUJ9 269 aa25.35■■□□□ 1.65
USB1-208ENST00000563207 CDC42BPBQ9Y5S2 1711 aa25.34■■□□□ 1.65
USB1-208ENST00000563207 CLIP1P30622 1438 aa25.33■■□□□ 1.65
USB1-208ENST00000563207 ARHGAP5Q13017 1502 aa25.32■■□□□ 1.64
USB1-208ENST00000563207 RIMS1Q86UR5 1692 aaKnown RBP25.32■■□□□ 1.64
USB1-208ENST00000563207 MLECQ14165 292 aa25.28■■□□□ 1.64
USB1-208ENST00000563207 AFAP1Q8N556 730 aa25.28■■□□□ 1.64
USB1-208ENST00000563207 CCDC18Q5T9S5 1454 aa25.28■■□□□ 1.64
USB1-208ENST00000563207 MAGI2Q86UL8 1455 aa25.28■■□□□ 1.64
USB1-208ENST00000563207 PLPPR3Q6T4P5 718 aa25.27■■□□□ 1.64
USB1-208ENST00000563207 FYCO1Q9BQS8 1478 aa25.26■■□□□ 1.63
USB1-208ENST00000563207 PREX2Q70Z35 1606 aa25.24■■□□□ 1.63
USB1-208ENST00000563207 CDC42BPAQ5VT25 1732 aa25.23■■□□□ 1.63
USB1-208ENST00000563207 ARHGEF12Q9NZN5 1544 aa25.23■■□□□ 1.63
USB1-208ENST00000563207 ATP10AO60312 1499 aa25.21■■□□□ 1.63
USB1-208ENST00000563207 KDM5CP41229 1560 aa25.2■■□□□ 1.62
USB1-208ENST00000563207 ILDR1Q86SU0 546 aaPredicted RBP25.2■■□□□ 1.62
USB1-208ENST00000563207 ZNF518AQ6AHZ1 1483 aa25.2■■□□□ 1.62
USB1-208ENST00000563207 TRAPPC8Q9Y2L5 1435 aa25.19■■□□□ 1.62
USB1-208ENST00000563207 FER1L4A9Z1Z3 1794 aa25.17■■□□□ 1.62
USB1-208ENST00000563207 C9orf84Q5VXU9 1444 aa25.17■■□□□ 1.62
USB1-208ENST00000563207 ABCC1P33527 1531 aa25.17■■□□□ 1.62
USB1-208ENST00000563207 ITSN2Q9NZM3 1697 aa25.16■■□□□ 1.62
USB1-208ENST00000563207 LMTK3Q96Q04 1460 aa25.15■■□□□ 1.62
USB1-208ENST00000563207 DIP2CQ9Y2E4 1556 aa25.14■■□□□ 1.62
USB1-208ENST00000563207 MYT1LQ9UL68 1186 aa25.14■■□□□ 1.62
USB1-208ENST00000563207 ABCA6Q8N139 1617 aa25.14■■□□□ 1.61
USB1-208ENST00000563207 ZNF777Q9ULD5 760 aaPredicted RBP25.12■■□□□ 1.61
USB1-208ENST00000563207 GPATCH8Q9UKJ3 1502 aaKnown RBP25.12■■□□□ 1.61
USB1-208ENST00000563207 SAMD9LQ8IVG5 1584 aa25.11■■□□□ 1.61
USB1-208ENST00000563207 HSPA2P54652 639 aa25.1■■□□□ 1.61
USB1-208ENST00000563207 CEP162Q5TB80 1403 aa25.1■■□□□ 1.61
USB1-208ENST00000563207 CEBPAP49715 358 aaPredicted RBP25.09■■□□□ 1.61
USB1-208ENST00000563207 MLH3Q9UHC1 1453 aa25.08■■□□□ 1.6
USB1-208ENST00000563207 KIDINS220Q9ULH0 1771 aa25.08■■□□□ 1.6
USB1-208ENST00000563207 LOC105371045A0A1W2PR82 267 aa25.07■■□□□ 1.6
USB1-208ENST00000563207 HNRNPMP52272 730 aaKnown RBP eCLIP25.06■■□□□ 1.6
USB1-208ENST00000563207 SYCP2Q9BX26 1530 aa25.05■■□□□ 1.6
USB1-208ENST00000563207 MTUS2Q5JR59 1369 aa25.02■■□□□ 1.6
USB1-208ENST00000563207 REREQ9P2R6 1566 aa25.01■■□□□ 1.59
USB1-208ENST00000563207 CCNB3Q8WWL7 1395 aa24.99■■□□□ 1.59
USB1-208ENST00000563207 ZNF644Q9H582 1327 aaPredicted RBP24.99■■□□□ 1.59
USB1-208ENST00000563207 CFDP1Q9UEE9 299 aaPredicted RBP24.99■■□□□ 1.59
USB1-208ENST00000563207 TIAM1Q13009 1591 aa24.97■■□□□ 1.59
USB1-208ENST00000563207 AGLP35573 1532 aa24.94■■□□□ 1.58
USB1-208ENST00000563207 SPAG9O60271 1321 aaKnown RBP24.93■■□□□ 1.58
USB1-208ENST00000563207 EHBP1L1Q8N3D4 1523 aa24.93■■□□□ 1.58
USB1-208ENST00000563207 C3P01024 1663 aa24.92■■□□□ 1.58
USB1-208ENST00000563207 SUPT6HQ7KZ85 1726 aaKnown RBP24.92■■□□□ 1.58
USB1-208ENST00000563207 PREX1Q8TCU6 1659 aa24.91■■□□□ 1.58
USB1-208ENST00000563207 KIAA1107Q9UPP5 1409 aa24.9■■□□□ 1.58
USB1-208ENST00000563207 ATP7AQ04656 1500 aa24.9■■□□□ 1.58
USB1-208ENST00000563207 INO80Q9ULG1 1556 aaPredicted RBP24.89■■□□□ 1.58
USB1-208ENST00000563207 PLEKHH2Q8IVE3 1493 aa24.86■■□□□ 1.57
USB1-208ENST00000563207 MBD5Q9P267 1494 aa24.85■■□□□ 1.57
USB1-208ENST00000563207 NCOA2Q15596 1464 aa24.84■■□□□ 1.57
USB1-208ENST00000563207 ESF1Q9H501 851 aaKnown RBP24.81■■□□□ 1.56
USB1-208ENST00000563207 PLXNC1O60486 1568 aa24.8■■□□□ 1.56
USB1-208ENST00000563207 STRCQ7RTU9 1775 aa24.8■■□□□ 1.56
USB1-208ENST00000563207 A2MP01023 1474 aa24.8■■□□□ 1.56
USB1-208ENST00000563207 VPS8Q8N3P4 1428 aa24.79■■□□□ 1.56
USB1-208ENST00000563207 SETD1BQ9UPS6 1966 aaKnown RBP24.78■■□□□ 1.56
USB1-208ENST00000563207 UHRF1BP1Q6BDS2 1440 aa24.78■■□□□ 1.56
USB1-208ENST00000563207 KANK4Q5T7N3 995 aaPredicted RBP24.77■■□□□ 1.56
USB1-208ENST00000563207 CLTCQ00610 1675 aaKnown RBP24.77■■□□□ 1.56
USB1-208ENST00000563207 FBXO41Q8TF61 875 aa24.76■■□□□ 1.55
USB1-208ENST00000563207 CAMSAP2Q08AD1 1489 aa24.75■■□□□ 1.55
USB1-208ENST00000563207 ADGBQ8N7X0 1667 aa24.75■■□□□ 1.55
USB1-208ENST00000563207 GGT6Q6P531 493 aa24.74■■□□□ 1.55
USB1-208ENST00000563207 LRRC9Q6ZRR7 1453 aa24.74■■□□□ 1.55
USB1-208ENST00000563207 CNTLNQ9NXG0 1405 aa24.73■■□□□ 1.55
USB1-208ENST00000563207 ZMYM3Q14202 1370 aa24.73■■□□□ 1.55
USB1-208ENST00000563207 MROH2AA6NES4 1674 aa24.72■■□□□ 1.55
USB1-208ENST00000563207 CCDC141Q6ZP82 1450 aa24.68■■□□□ 1.54
USB1-208ENST00000563207 RTEL1-TNFRSF6BF6WH68 1400 aa24.68■■□□□ 1.54
USB1-208ENST00000563207 DHX29Q7Z478 1369 aaKnown RBP24.65■■□□□ 1.54
USB1-208ENST00000563207 CERKQ8TCT0 537 aa24.64■■□□□ 1.54
USB1-208ENST00000563207 NPATQ14207 1427 aa24.62■■□□□ 1.53
USB1-208ENST00000563207 PTPRKQ15262 1439 aa24.62■■□□□ 1.53
USB1-208ENST00000563207 KIF3BO15066 747 aa24.61■■□□□ 1.53
USB1-208ENST00000563207 ARHGEF5Q12774 1597 aa24.61■■□□□ 1.53
USB1-208ENST00000563207 MAP3K1Q13233 1512 aa24.6■■□□□ 1.53
USB1-208ENST00000563207 CAMSAP1Q5T5Y3 1602 aa24.58■■□□□ 1.53
USB1-208ENST00000563207 MYO3AQ8NEV4 1616 aa24.58■■□□□ 1.53
USB1-208ENST00000563207 NCOA1Q15788 1441 aa24.57■■□□□ 1.52
USB1-208ENST00000563207 RSPH4AQ5TD94 716 aa24.56■■□□□ 1.52
USB1-208ENST00000563207 DMRT2Q9Y5R5 561 aa24.56■■□□□ 1.52
USB1-208ENST00000563207 FBXO31Q5XUX0 539 aaPredicted RBP24.55■■□□□ 1.52
USB1-208ENST00000563207 NCKAP5LQ9HCH0 1330 aa24.55■■□□□ 1.52
USB1-208ENST00000563207 MYOM3Q5VTT5 1437 aa24.54■■□□□ 1.52
USB1-208ENST00000563207 PTPRTO14522 1441 aa24.53■■□□□ 1.52
USB1-208ENST00000563207 TSPY4P0CV99 314 aa24.53■■□□□ 1.52
USB1-208ENST00000563207 TSPY10P0CW01 314 aa24.53■■□□□ 1.52
USB1-208ENST00000563207 PPP6R1Q9UPN7 881 aa24.53■■□□□ 1.52
USB1-208ENST00000563207 ZNF142P52746 1687 aaPredicted RBP24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms