RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 NISCHQ9Y2I1 1504 aa38.83■■■■□ 3.81
USB1-208ENST00000563207 CCDC180Q9P1Z9 1646 aa34.7■■■■□ 3.15
USB1-208ENST00000563207 ABCC9O60706 1549 aa34.7■■■■□ 3.14
USB1-208ENST00000563207 RB1CC1Q8TDY2 1594 aa32.96■■■□□ 2.87
USB1-208ENST00000563207 DCAF8L2P0C7V8 631 aa32.8■■■□□ 2.84
USB1-208ENST00000563207 NACADO15069 1562 aa32.75■■■□□ 2.83
USB1-208ENST00000563207 DNAJC5BQ9UF47 199 aa32.5■■■□□ 2.79
USB1-208ENST00000563207 UNC13AQ9UPW8 1703 aa32.38■■■□□ 2.77
USB1-208ENST00000563207 PABPN1Q86U42 306 aaKnown RBP eCLIP32.38■■■□□ 2.77
USB1-208ENST00000563207 MYO15BQ96JP2 1530 aa32.3■■■□□ 2.76
USB1-208ENST00000563207 ZCCHC6Q5VYS8 1495 aaKnown RBP32.21■■■□□ 2.75
USB1-208ENST00000563207 BICRAQ9NZM4 1560 aa32.12■■■□□ 2.73
USB1-208ENST00000563207 DCAF1Q9Y4B6 1507 aa31.98■■■□□ 2.71
USB1-208ENST00000563207 SCRIBQ14160 1630 aa31.77■■■□□ 2.68
USB1-208ENST00000563207 SHROOM4Q9ULL8 1493 aa31.44■■■□□ 2.62
USB1-208ENST00000563207 CC2D2AQ9P2K1 1620 aa31.32■■■□□ 2.6
USB1-208ENST00000563207 EIF4G1Q04637 1599 aaKnown RBP31.26■■■□□ 2.6
USB1-208ENST00000563207 CECR2Q9BXF3 1484 aa31.16■■■□□ 2.58
USB1-208ENST00000563207 NCAPD3P42695 1498 aa30.27■■■□□ 2.44
USB1-208ENST00000563207 SMARCA4P51532 1647 aa30.27■■■□□ 2.44
USB1-208ENST00000563207 ATAD2BQ9ULI0 1458 aa30.25■■■□□ 2.43
USB1-208ENST00000563207 SMARCA2P51531 1590 aa30.09■■■□□ 2.41
USB1-208ENST00000563207 BAZ1AQ9NRL2 1556 aaPredicted RBP30.07■■■□□ 2.4
USB1-208ENST00000563207 HMGXB3Q12766 1538 aa30.04■■■□□ 2.4
USB1-208ENST00000563207 MROH2BQ7Z745 1585 aa30■■■□□ 2.39
USB1-208ENST00000563207 BAZ1BQ9UIG0 1483 aaKnown RBP29.93■■■□□ 2.38
USB1-208ENST00000563207 PEG3Q9GZU2 1588 aa29.91■■■□□ 2.38
USB1-208ENST00000563207 NESP48681 1621 aa29.89■■■□□ 2.38
USB1-208ENST00000563207 ERCC6Q03468 1493 aa29.84■■■□□ 2.37
USB1-208ENST00000563207 CUX2O14529 1486 aa29.68■■■□□ 2.34
USB1-208ENST00000563207 WIZO95785 1651 aa29.67■■■□□ 2.34
USB1-208ENST00000563207 DNAJC5Q9H3Z4 198 aa29.56■■■□□ 2.32
USB1-208ENST00000563207 LAMC3Q9Y6N6 1575 aa29.55■■■□□ 2.32
USB1-208ENST00000563207 KIF21AQ7Z4S6 1674 aa29.48■■■□□ 2.31
USB1-208ENST00000563207 THOC2Q8NI27 1593 aaKnown RBP29.47■■■□□ 2.31
USB1-208ENST00000563207 RSF1Q96T23 1441 aaPredicted RBP29.4■■■□□ 2.3
USB1-208ENST00000563207 CADPSQ9ULU8 1353 aa29.37■■■□□ 2.29
USB1-208ENST00000563207 PDS5BQ9NTI5 1447 aa29.35■■■□□ 2.29
USB1-208ENST00000563207 TOP2AP11388 1531 aaKnown RBP29.2■■■□□ 2.26
USB1-208ENST00000563207 MRC2Q9UBG0 1479 aa29.13■■■□□ 2.25
USB1-208ENST00000563207 CFTRP13569 1480 aa29.07■■■□□ 2.24
USB1-208ENST00000563207 FANCD2Q9BXW9 1451 aa29.07■■■□□ 2.24
USB1-208ENST00000563207 WDR62O43379 1518 aa29.06■■■□□ 2.24
USB1-208ENST00000563207 CEP164Q9UPV0 1460 aa29.04■■■□□ 2.24
USB1-208ENST00000563207 CCDC88BA6NC98 1476 aa28.93■■■□□ 2.22
USB1-208ENST00000563207 URB2Q14146 1524 aaKnown RBP28.87■■■□□ 2.21
USB1-208ENST00000563207 PRDM2Q13029 1718 aa28.81■■■□□ 2.2
USB1-208ENST00000563207 TOPBP1Q92547 1522 aa28.55■■■□□ 2.16
USB1-208ENST00000563207 ZNF608Q9ULD9 1512 aaPredicted RBP28.52■■■□□ 2.16
USB1-208ENST00000563207 IFT140Q96RY7 1462 aa28.43■■■□□ 2.14
USB1-208ENST00000563207 DNMBPQ6XZF7 1577 aa28.42■■■□□ 2.14
USB1-208ENST00000563207 TRIM41Q8WV44 630 aa28.42■■■□□ 2.14
USB1-208ENST00000563207 OSCARQ8IYS5 282 aa28.4■■■□□ 2.14
USB1-208ENST00000563207 ABCC8Q09428 1581 aa28.36■■■□□ 2.13
USB1-208ENST00000563207 EIF4G3O43432 1585 aaKnown RBP28.31■■■□□ 2.12
USB1-208ENST00000563207 TARBP1Q13395 1621 aaKnown RBP28.31■■■□□ 2.12
USB1-208ENST00000563207 SUPT5HO00267 1087 aaKnown RBP28.29■■■□□ 2.12
USB1-208ENST00000563207 AQRO60306 1485 aaKnown RBP eCLIP28.27■■■□□ 2.12
USB1-208ENST00000563207 POLA1P09884 1462 aaPredicted RBP28.27■■■□□ 2.12
USB1-208ENST00000563207 RAD54L2Q9Y4B4 1467 aa28.23■■■□□ 2.11
USB1-208ENST00000563207 CUX1P39880 1505 aa28.16■■■□□ 2.1
USB1-208ENST00000563207 SOGA1O94964 1423 aa28.13■■■□□ 2.09
USB1-208ENST00000563207 FGD5Q6ZNL6 1462 aa28.13■■■□□ 2.09
USB1-208ENST00000563207 TDRD9Q8NDG6 1382 aaKnown RBP28.11■■■□□ 2.09
USB1-208ENST00000563207 CHD1O14646 1710 aa28.11■■■□□ 2.09
USB1-208ENST00000563207 RIMBP3CA6NJZ7 1639 aa28.09■■■□□ 2.09
USB1-208ENST00000563207 RIMBP3BA6NNM3 1639 aa28.09■■■□□ 2.09
USB1-208ENST00000563207 RIMBP3Q9UFD9 1639 aa28.09■■■□□ 2.09
USB1-208ENST00000563207 FBLN2P98095 1184 aa28.02■■■□□ 2.08
USB1-208ENST00000563207 ARHGEF11O15085 1522 aa27.98■■■□□ 2.07
USB1-208ENST00000563207 SNAPC4Q5SXM2 1469 aa27.93■■■□□ 2.06
USB1-208ENST00000563207 WDR97A6NE52 1622 aa27.92■■■□□ 2.06
USB1-208ENST00000563207 GRIN2BQ13224 1484 aa27.82■■■□□ 2.04
USB1-208ENST00000563207 CYB5RLQ6IPT4 315 aa27.81■■■□□ 2.04
USB1-208ENST00000563207 PBRM1Q86U86 1689 aa27.81■■■□□ 2.04
USB1-208ENST00000563207 GAPVD1Q14C86 1478 aa27.78■■■□□ 2.04
USB1-208ENST00000563207 CHMP7Q8WUX9 453 aaPredicted RBP27.78■■■□□ 2.04
USB1-208ENST00000563207 MAGI1Q96QZ7 1491 aaPredicted RBP27.77■■■□□ 2.04
USB1-208ENST00000563207 ABCA10Q8WWZ4 1543 aa27.76■■■□□ 2.03
USB1-208ENST00000563207 SYNJ1O43426 1573 aa27.75■■■□□ 2.03
USB1-208ENST00000563207 ARAP1Q96P48 1450 aa27.75■■■□□ 2.03
USB1-208ENST00000563207 ABCA5Q8WWZ7 1642 aa27.74■■■□□ 2.03
USB1-208ENST00000563207 CLASP1Q7Z460 1538 aa27.74■■■□□ 2.03
USB1-208ENST00000563207 SYNJ2O15056 1496 aa27.71■■■□□ 2.03
USB1-208ENST00000563207 BIVM-ERCC5R4GMW8 1640 aa27.7■■■□□ 2.03
USB1-208ENST00000563207 TOP2BQ02880 1626 aa27.69■■■□□ 2.02
USB1-208ENST00000563207 WRNQ14191 1432 aaPredicted RBP eCLIP27.68■■■□□ 2.02
USB1-208ENST00000563207 ADAMTS12P58397 1594 aa27.52■■■□□ 2
USB1-208ENST00000563207 GRIN2AQ12879 1464 aa27.5■■□□□ 1.99
USB1-208ENST00000563207 CEP170Q5SW79 1584 aa27.45■■□□□ 1.99
USB1-208ENST00000563207 ERCC6L2Q5T890 1561 aa27.44■■□□□ 1.98
USB1-208ENST00000563207 TRHP20396 242 aaPredicted RBP27.42■■□□□ 1.98
USB1-208ENST00000563207 FHAD1B1AJZ9 1412 aa27.4■■□□□ 1.98
USB1-208ENST00000563207 ERICH3Q5RHP9 1530 aa27.39■■□□□ 1.98
USB1-208ENST00000563207 NUP160Q12769 1436 aa27.39■■□□□ 1.97
USB1-208ENST00000563207 SHROOM2Q13796 1616 aa27.27■■□□□ 1.96
USB1-208ENST00000563207 IGF1RP08069 1367 aa27.16■■□□□ 1.94
USB1-208ENST00000563207 PRG4Q92954 1404 aaPredicted RBP27.15■■□□□ 1.94
USB1-208ENST00000563207 RUSC2Q8N2Y8 1516 aa27.13■■□□□ 1.93
USB1-208ENST00000563207 JPH4Q96JJ6 628 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms