RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ARHGAP5Q13017 1502 aa25.58■■□□□ 1.69
VPS4A-202ENST00000562754 TSPOAP1O95153 1857 aa25.57■■□□□ 1.68
VPS4A-202ENST00000562754 MIA2Q96PC5 1412 aa25.55■■□□□ 1.68
VPS4A-202ENST00000562754 PTPN23Q9H3S7 1636 aa25.55■■□□□ 1.68
VPS4A-202ENST00000562754 SAMD9LQ8IVG5 1584 aa25.54■■□□□ 1.68
VPS4A-202ENST00000562754 RRBP1Q9P2E9 1410 aaKnown RBP25.54■■□□□ 1.68
VPS4A-202ENST00000562754 CFDP1Q9UEE9 299 aaPredicted RBP25.52■■□□□ 1.68
VPS4A-202ENST00000562754 FANCAO15360 1455 aa25.52■■□□□ 1.68
VPS4A-202ENST00000562754 CAMSAP2Q08AD1 1489 aa25.51■■□□□ 1.67
VPS4A-202ENST00000562754 TCOF1Q13428 1488 aaKnown RBP25.51■■□□□ 1.67
VPS4A-202ENST00000562754 CFAP74Q9C0B2 1584 aa25.51■■□□□ 1.67
VPS4A-202ENST00000562754 TRHP20396 242 aaPredicted RBP25.5■■□□□ 1.67
VPS4A-202ENST00000562754 ZNF644Q9H582 1327 aaPredicted RBP25.47■■□□□ 1.67
VPS4A-202ENST00000562754 ABCC1P33527 1531 aa25.47■■□□□ 1.67
VPS4A-202ENST00000562754 EFCAB2Q5VUJ9 269 aa25.46■■□□□ 1.67
VPS4A-202ENST00000562754 TEX14Q8IWB6 1497 aa25.46■■□□□ 1.67
VPS4A-202ENST00000562754 NEO1Q92859 1461 aa25.46■■□□□ 1.67
VPS4A-202ENST00000562754 ZNF777Q9ULD5 760 aaPredicted RBP25.44■■□□□ 1.66
VPS4A-202ENST00000562754 SYCP2Q9BX26 1530 aa25.42■■□□□ 1.66
VPS4A-202ENST00000562754 AKNAQ7Z591 1439 aa25.42■■□□□ 1.66
VPS4A-202ENST00000562754 ARHGEF12Q9NZN5 1544 aa25.41■■□□□ 1.66
VPS4A-202ENST00000562754 PLEKHH2Q8IVE3 1493 aa25.4■■□□□ 1.66
VPS4A-202ENST00000562754 ADGRL1O94910 1474 aa25.4■■□□□ 1.66
VPS4A-202ENST00000562754 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.39■■□□□ 1.65
VPS4A-202ENST00000562754 FAM50AQ14320 339 aaKnown RBP25.38■■□□□ 1.65
VPS4A-202ENST00000562754 KIAA1107Q9UPP5 1409 aa25.37■■□□□ 1.65
VPS4A-202ENST00000562754 ARHGEF5Q12774 1597 aa25.37■■□□□ 1.65
VPS4A-202ENST00000562754 MBD5Q9P267 1494 aa25.37■■□□□ 1.65
VPS4A-202ENST00000562754 DNMT1P26358 1616 aaKnown RBP25.37■■□□□ 1.65
VPS4A-202ENST00000562754 CROCC2H7BZ55 1655 aa25.34■■□□□ 1.65
VPS4A-202ENST00000562754 SCAPERQ9BY12 1400 aa25.34■■□□□ 1.65
VPS4A-202ENST00000562754 TRAPPC8Q9Y2L5 1435 aa25.32■■□□□ 1.64
VPS4A-202ENST00000562754 HNRNPMP52272 730 aaKnown RBP eCLIP25.31■■□□□ 1.64
VPS4A-202ENST00000562754 FRMPD1Q5SYB0 1578 aa25.31■■□□□ 1.64
VPS4A-202ENST00000562754 ABCC5O15440 1437 aa25.3■■□□□ 1.64
VPS4A-202ENST00000562754 DAPK1P53355 1430 aa25.3■■□□□ 1.64
VPS4A-202ENST00000562754 CCDC141Q6ZP82 1450 aa25.3■■□□□ 1.64
VPS4A-202ENST00000562754 RICTORQ6R327 1708 aa25.3■■□□□ 1.64
VPS4A-202ENST00000562754 POGZQ7Z3K3 1410 aa25.29■■□□□ 1.64
VPS4A-202ENST00000562754 TRIM26Q12899 539 aaPredicted RBP25.28■■□□□ 1.64
VPS4A-202ENST00000562754 DENND4BO75064 1496 aaPredicted RBP25.28■■□□□ 1.64
VPS4A-202ENST00000562754 COL17A1Q9UMD9 1497 aaPredicted RBP25.28■■□□□ 1.64
VPS4A-202ENST00000562754 PTPRKQ15262 1439 aa25.27■■□□□ 1.64
VPS4A-202ENST00000562754 KDM5CP41229 1560 aa25.26■■□□□ 1.63
VPS4A-202ENST00000562754 ZNF518AQ6AHZ1 1483 aa25.24■■□□□ 1.63
VPS4A-202ENST00000562754 SHANK2Q9UPX8 1470 aa25.24■■□□□ 1.63
VPS4A-202ENST00000562754 MAST1Q9Y2H9 1570 aa25.22■■□□□ 1.63
VPS4A-202ENST00000562754 ITGAEP38570 1179 aa25.21■■□□□ 1.63
VPS4A-202ENST00000562754 KDM6BO15054 1643 aa25.21■■□□□ 1.63
VPS4A-202ENST00000562754 INO80Q9ULG1 1556 aaPredicted RBP25.21■■□□□ 1.63
VPS4A-202ENST00000562754 ADGBQ8N7X0 1667 aa25.2■■□□□ 1.63
VPS4A-202ENST00000562754 AFAP1Q8N556 730 aa25.2■■□□□ 1.62
VPS4A-202ENST00000562754 ZMYM4Q5VZL5 1548 aa25.2■■□□□ 1.62
VPS4A-202ENST00000562754 C9orf84Q5VXU9 1444 aa25.2■■□□□ 1.62
VPS4A-202ENST00000562754 ZFYVE16Q7Z3T8 1539 aa25.19■■□□□ 1.62
VPS4A-202ENST00000562754 RAPGEF3O95398 923 aa25.19■■□□□ 1.62
VPS4A-202ENST00000562754 RSPH4AQ5TD94 716 aa25.19■■□□□ 1.62
VPS4A-202ENST00000562754 HECW2Q9P2P5 1572 aa25.18■■□□□ 1.62
VPS4A-202ENST00000562754 KIDINS220Q9ULH0 1771 aa25.16■■□□□ 1.62
VPS4A-202ENST00000562754 ATP7AQ04656 1500 aa25.16■■□□□ 1.62
VPS4A-202ENST00000562754 ADGRL2O95490 1459 aa25.15■■□□□ 1.62
VPS4A-202ENST00000562754 PLXNC1O60486 1568 aa25.14■■□□□ 1.61
VPS4A-202ENST00000562754 CHIC2Q9UKJ5 165 aa25.13■■□□□ 1.61
VPS4A-202ENST00000562754 MLH3Q9UHC1 1453 aa25.13■■□□□ 1.61
VPS4A-202ENST00000562754 SPAG9O60271 1321 aaKnown RBP25.12■■□□□ 1.61
VPS4A-202ENST00000562754 RTEL1-TNFRSF6BF6WH68 1400 aa25.12■■□□□ 1.61
VPS4A-202ENST00000562754 TSPY4P0CV99 314 aa25.11■■□□□ 1.61
VPS4A-202ENST00000562754 TSPY10P0CW01 314 aa25.11■■□□□ 1.61
VPS4A-202ENST00000562754 ABCA6Q8N139 1617 aa25.1■■□□□ 1.61
VPS4A-202ENST00000562754 ROCK1Q13464 1354 aa25.09■■□□□ 1.61
VPS4A-202ENST00000562754 NCOA1Q15788 1441 aa25.08■■□□□ 1.61
VPS4A-202ENST00000562754 GCC2Q8IWJ2 1684 aa25.07■■□□□ 1.6
VPS4A-202ENST00000562754 DIP2CQ9Y2E4 1556 aa25.07■■□□□ 1.6
VPS4A-202ENST00000562754 ANKRD30AQ9BXX3 1397 aa25.06■■□□□ 1.6
VPS4A-202ENST00000562754 YEATS2Q9ULM3 1422 aa25.06■■□□□ 1.6
VPS4A-202ENST00000562754 PCGF6Q9BYE7 350 aa25.06■■□□□ 1.6
VPS4A-202ENST00000562754 MAGI2Q86UL8 1455 aa25.06■■□□□ 1.6
VPS4A-202ENST00000562754 ARHGEF40Q8TER5 1519 aa25.06■■□□□ 1.6
VPS4A-202ENST00000562754 HFM1A2PYH4 1435 aa25.03■■□□□ 1.6
VPS4A-202ENST00000562754 KIF15Q9NS87 1388 aa25.03■■□□□ 1.6
VPS4A-202ENST00000562754 RRP7BPQ9NSQ0 103 aa25.02■■□□□ 1.6
VPS4A-202ENST00000562754 NAIPQ13075 1403 aa25.02■■□□□ 1.6
VPS4A-202ENST00000562754 MYT1LQ9UL68 1186 aa25■■□□□ 1.59
VPS4A-202ENST00000562754 DUOX2Q9NRD8 1548 aa24.98■■□□□ 1.59
VPS4A-202ENST00000562754 A2MP01023 1474 aa24.95■■□□□ 1.58
VPS4A-202ENST00000562754 REREQ9P2R6 1566 aa24.94■■□□□ 1.58
VPS4A-202ENST00000562754 ATP10AO60312 1499 aa24.94■■□□□ 1.58
VPS4A-202ENST00000562754 SIGLEC1Q9BZZ2 1709 aa24.93■■□□□ 1.58
VPS4A-202ENST00000562754 SETD5Q9C0A6 1442 aa24.93■■□□□ 1.58
VPS4A-202ENST00000562754 ANKRD50Q9ULJ7 1429 aa24.93■■□□□ 1.58
VPS4A-202ENST00000562754 ERBINQ96RT1 1412 aa24.92■■□□□ 1.58
VPS4A-202ENST00000562754 DHX29Q7Z478 1369 aaKnown RBP24.91■■□□□ 1.58
VPS4A-202ENST00000562754 EIF2AK4Q9P2K8 1649 aaKnown RBP24.9■■□□□ 1.58
VPS4A-202ENST00000562754 BCORL1Q5H9F3 1711 aa24.88■■□□□ 1.57
VPS4A-202ENST00000562754 RAB3GAP2Q9H2M9 1393 aa24.88■■□□□ 1.57
VPS4A-202ENST00000562754 AGLP35573 1532 aa24.84■■□□□ 1.57
VPS4A-202ENST00000562754 RNF17Q9BXT8 1623 aaKnown RBP24.83■■□□□ 1.57
VPS4A-202ENST00000562754 UNC13BO14795 1591 aa24.83■■□□□ 1.57
VPS4A-202ENST00000562754 DEPDC5O75140 1603 aa24.83■■□□□ 1.56
VPS4A-202ENST00000562754 MROH1Q8NDA8 1641 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms