RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 ARAP3Q8WWN8 1544 aa22.43■■□□□ 1.18
USP3-221ENST00000561442 NCOA2Q15596 1464 aa22.43■■□□□ 1.18
USP3-221ENST00000561442 RAPGEF3O95398 923 aa22.42■■□□□ 1.18
USP3-221ENST00000561442 CFAP74Q9C0B2 1584 aa22.42■■□□□ 1.18
USP3-221ENST00000561442 ZNF777Q9ULD5 760 aaPredicted RBP22.41■■□□□ 1.18
USP3-221ENST00000561442 ADGRL1O94910 1474 aa22.41■■□□□ 1.18
USP3-221ENST00000561442 PREX2Q70Z35 1606 aa22.4■■□□□ 1.18
USP3-221ENST00000561442 CFDP1Q9UEE9 299 aaPredicted RBP22.4■■□□□ 1.18
USP3-221ENST00000561442 SUPT6HQ7KZ85 1726 aaKnown RBP22.39■■□□□ 1.17
USP3-221ENST00000561442 SCAPERQ9BY12 1400 aa22.39■■□□□ 1.17
USP3-221ENST00000561442 DENND4BO75064 1496 aaPredicted RBP22.38■■□□□ 1.17
USP3-221ENST00000561442 CDC42BPAQ5VT25 1732 aa22.37■■□□□ 1.17
USP3-221ENST00000561442 CDC42BPBQ9Y5S2 1711 aa22.37■■□□□ 1.17
USP3-221ENST00000561442 PPARGC1BQ86YN6 1023 aaKnown RBP22.33■■□□□ 1.17
USP3-221ENST00000561442 ZNF644Q9H582 1327 aaPredicted RBP22.31■■□□□ 1.16
USP3-221ENST00000561442 FRMPD1Q5SYB0 1578 aa22.31■■□□□ 1.16
USP3-221ENST00000561442 POGZQ7Z3K3 1410 aa22.31■■□□□ 1.16
USP3-221ENST00000561442 SAMD9LQ8IVG5 1584 aa22.29■■□□□ 1.16
USP3-221ENST00000561442 ABCC1P33527 1531 aa22.29■■□□□ 1.16
USP3-221ENST00000561442 ARHGEF12Q9NZN5 1544 aa22.29■■□□□ 1.16
USP3-221ENST00000561442 HNRNPMP52272 730 aaKnown RBP eCLIP22.28■■□□□ 1.168e-7■■■■■ 27.1
USP3-221ENST00000561442 AFAP1Q8N556 730 aa22.28■■□□□ 1.16
USP3-221ENST00000561442 ITSN2Q9NZM3 1697 aa22.27■■□□□ 1.16
USP3-221ENST00000561442 TRAPPC8Q9Y2L5 1435 aa22.27■■□□□ 1.16
USP3-221ENST00000561442 MYOM3Q5VTT5 1437 aa22.26■■□□□ 1.15
USP3-221ENST00000561442 SYCP2Q9BX26 1530 aa22.26■■□□□ 1.15
USP3-221ENST00000561442 RICTORQ6R327 1708 aa22.25■■□□□ 1.15
USP3-221ENST00000561442 ZNF518AQ6AHZ1 1483 aa22.24■■□□□ 1.15
USP3-221ENST00000561442 PLEKHH2Q8IVE3 1493 aa22.24■■□□□ 1.15
USP3-221ENST00000561442 KIAA1107Q9UPP5 1409 aa22.23■■□□□ 1.15
USP3-221ENST00000561442 MYT1LQ9UL68 1186 aa22.22■■□□□ 1.15
USP3-221ENST00000561442 CAMSAP2Q08AD1 1489 aa22.22■■□□□ 1.15
USP3-221ENST00000561442 ZMYM4Q5VZL5 1548 aa22.21■■□□□ 1.15
USP3-221ENST00000561442 YEATS2Q9ULM3 1422 aa22.2■■□□□ 1.14
USP3-221ENST00000561442 MIA2Q96PC5 1412 aa22.19■■□□□ 1.14
USP3-221ENST00000561442 MBD5Q9P267 1494 aa22.17■■□□□ 1.14
USP3-221ENST00000561442 KDM5CP41229 1560 aa22.16■■□□□ 1.14
USP3-221ENST00000561442 ZFYVE16Q7Z3T8 1539 aa22.16■■□□□ 1.14
USP3-221ENST00000561442 FGD6Q6ZV73 1430 aa22.16■■□□□ 1.14
USP3-221ENST00000561442 MAGI2Q86UL8 1455 aa22.15■■□□□ 1.14
USP3-221ENST00000561442 SPAG9O60271 1321 aaKnown RBP22.15■■□□□ 1.14
USP3-221ENST00000561442 ARHGEF40Q8TER5 1519 aa22.15■■□□□ 1.14
USP3-221ENST00000561442 MLH3Q9UHC1 1453 aa22.12■■□□□ 1.13
USP3-221ENST00000561442 HECW2Q9P2P5 1572 aa22.12■■□□□ 1.13
USP3-221ENST00000561442 CCDC141Q6ZP82 1450 aa22.1■■□□□ 1.13
USP3-221ENST00000561442 PTPN23Q9H3S7 1636 aa22.1■■□□□ 1.13
USP3-221ENST00000561442 ARID4BQ4LE39 1312 aaPredicted RBP22.09■■□□□ 1.13
USP3-221ENST00000561442 FAM50AQ14320 339 aaKnown RBP22.09■■□□□ 1.13
USP3-221ENST00000561442 RSPH4AQ5TD94 716 aa22.07■■□□□ 1.12
USP3-221ENST00000561442 ATP10AO60312 1499 aa22.07■■□□□ 1.12
USP3-221ENST00000561442 TCOF1Q13428 1488 aaKnown RBP22.07■■□□□ 1.12
USP3-221ENST00000561442 ARHGEF5Q12774 1597 aa22.06■■□□□ 1.12
USP3-221ENST00000561442 DIP2CQ9Y2E4 1556 aa22.05■■□□□ 1.12
USP3-221ENST00000561442 TSPY4P0CV99 314 aa22.05■■□□□ 1.12
USP3-221ENST00000561442 TSPY10P0CW01 314 aa22.05■■□□□ 1.12
USP3-221ENST00000561442 ATP7AQ04656 1500 aa22.05■■□□□ 1.12
USP3-221ENST00000561442 C9orf84Q5VXU9 1444 aa22.05■■□□□ 1.12
USP3-221ENST00000561442 ABCA6Q8N139 1617 aa22.04■■□□□ 1.12
USP3-221ENST00000561442 KIDINS220Q9ULH0 1771 aa22.03■■□□□ 1.12
USP3-221ENST00000561442 INO80Q9ULG1 1556 aaPredicted RBP22.03■■□□□ 1.12
USP3-221ENST00000561442 KDM4FA0A1W2PPD8 638 aa22.02■■□□□ 1.12
USP3-221ENST00000561442 ABCC5O15440 1437 aa22.01■■□□□ 1.11
USP3-221ENST00000561442 RTEL1-TNFRSF6BF6WH68 1400 aa22■■□□□ 1.11
USP3-221ENST00000561442 MLECQ14165 292 aa22■■□□□ 1.11
USP3-221ENST00000561442 DAPK1P53355 1430 aa21.98■■□□□ 1.11
USP3-221ENST00000561442 SIGLEC1Q9BZZ2 1709 aa21.97■■□□□ 1.11
USP3-221ENST00000561442 CHIC2Q9UKJ5 165 aa21.96■■□□□ 1.11
USP3-221ENST00000561442 A2MP01023 1474 aa21.95■■□□□ 1.1
USP3-221ENST00000561442 DNMT1P26358 1616 aaKnown RBP21.95■■□□□ 1.1
USP3-221ENST00000561442 REREQ9P2R6 1566 aa21.94■■□□□ 1.1
USP3-221ENST00000561442 ITGAEP38570 1179 aa21.93■■□□□ 1.1
USP3-221ENST00000561442 SHANK2Q9UPX8 1470 aa21.93■■□□□ 1.1
USP3-221ENST00000561442 MAST1Q9Y2H9 1570 aa21.92■■□□□ 1.1
USP3-221ENST00000561442 RRBP1Q9P2E9 1410 aaKnown RBP21.91■■□□□ 1.1
USP3-221ENST00000561442 DHX29Q7Z478 1369 aaKnown RBP21.9■■□□□ 1.1
USP3-221ENST00000561442 RRP7BPQ9NSQ0 103 aa21.9■■□□□ 1.1
USP3-221ENST00000561442 AGLP35573 1532 aa21.89■■□□□ 1.09
USP3-221ENST00000561442 BCORL1Q5H9F3 1711 aa21.89■■□□□ 1.09
USP3-221ENST00000561442 CROCC2H7BZ55 1655 aa21.88■■□□□ 1.09
USP3-221ENST00000561442 PTPRKQ15262 1439 aa21.88■■□□□ 1.09
USP3-221ENST00000561442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.87■■□□□ 1.093e-6■□□□□ 10.3
USP3-221ENST00000561442 KIF15Q9NS87 1388 aa21.87■■□□□ 1.09
USP3-221ENST00000561442 PLXNC1O60486 1568 aa21.87■■□□□ 1.09
USP3-221ENST00000561442 AEBP2Q6ZN18 517 aaPredicted RBP21.87■■□□□ 1.09
USP3-221ENST00000561442 ADGBQ8N7X0 1667 aa21.86■■□□□ 1.09
USP3-221ENST00000561442 ANKRD30AQ9BXX3 1397 aa21.86■■□□□ 1.09
USP3-221ENST00000561442 ADAMTSL3P82987 1691 aa21.85■■□□□ 1.09
USP3-221ENST00000561442 KIF3BO15066 747 aa21.84■■□□□ 1.09
USP3-221ENST00000561442 MADDQ8WXG6 1647 aa21.84■■□□□ 1.09
USP3-221ENST00000561442 GGT6Q6P531 493 aa21.83■■□□□ 1.09
USP3-221ENST00000561442 NCOA1Q15788 1441 aa21.82■■□□□ 1.08
USP3-221ENST00000561442 PLPPR3Q6T4P5 718 aa21.81■■□□□ 1.08
USP3-221ENST00000561442 ADGRL2O95490 1459 aa21.81■■□□□ 1.08
USP3-221ENST00000561442 DUOX2Q9NRD8 1548 aa21.8■■□□□ 1.08
USP3-221ENST00000561442 ESF1Q9H501 851 aaKnown RBP21.79■■□□□ 1.08
USP3-221ENST00000561442 PTPRMP28827 1452 aa21.77■■□□□ 1.08
USP3-221ENST00000561442 RIMS1Q86UR5 1692 aaKnown RBP21.75■■□□□ 1.07
USP3-221ENST00000561442 ROCK1Q13464 1354 aa21.74■■□□□ 1.07
USP3-221ENST00000561442 ERBINQ96RT1 1412 aa21.74■■□□□ 1.07
USP3-221ENST00000561442 FER1L4A9Z1Z3 1794 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms