RNA–Protein interactions for RNA: ENST00000561071.5

MARK3-223, Transcript of microtubule affinity regulating kinase 3, human

TSL 3

Gene MARK3, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-223	ENST00000561071	METRN	Q9UJH8	293 aa		14	□□□□□ -0.17
MARK3-223	ENST00000561071	CC2D2A	Q9P2K1	1620 aa		14	□□□□□ -0.17
MARK3-223	ENST00000561071	SEC24B	O95487	1268 aa		13.99	□□□□□ -0.17
MARK3-223	ENST00000561071	C7	P10643	843 aa		13.98	□□□□□ -0.17
MARK3-223	ENST00000561071	CECR2	Q9BXF3	1484 aa		13.97	□□□□□ -0.17
MARK3-223	ENST00000561071	EIF4G1	Q04637	1599 aa	Known RBP	13.96	□□□□□ -0.17
MARK3-223	ENST00000561071	MICALL2	Q8IY33	904 aa		13.93	□□□□□ -0.18
MARK3-223	ENST00000561071	BOLA1	Q9Y3E2	137 aa		13.9	□□□□□ -0.18
MARK3-223	ENST00000561071	NCKAP5L	Q9HCH0	1330 aa		13.89	□□□□□ -0.19
MARK3-223	ENST00000561071	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.86	□□□□□ -0.19
MARK3-223	ENST00000561071	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.86	□□□□□ -0.19
MARK3-223	ENST00000561071		G3V3G9	751 aa		13.85	□□□□□ -0.19
MARK3-223	ENST00000561071	CRISPLD2	Q9H0B8	497 aa		13.83	□□□□□ -0.2
MARK3-223	ENST00000561071	LARP6	Q9BRS8	491 aa	Known RBP	13.82	□□□□□ -0.2
MARK3-223	ENST00000561071	WDR70	Q9NW82	654 aa		13.82	□□□□□ -0.2
MARK3-223	ENST00000561071	PDE4A	P27815	886 aa		13.81	□□□□□ -0.2
MARK3-223	ENST00000561071	GPHN	Q9NQX3	736 aa	Predicted RBP	13.76	□□□□□ -0.21
MARK3-223	ENST00000561071	MFSD10	Q14728	455 aa		13.75	□□□□□ -0.21
MARK3-223	ENST00000561071	TMEM92	Q6UXU6	159 aa		13.75	□□□□□ -0.21
MARK3-223	ENST00000561071	POTEB2	H3BUK9	544 aa		13.74	□□□□□ -0.21
MARK3-223	ENST00000561071	DDX27	Q96GQ7	796 aa	Known RBP	13.74	□□□□□ -0.21
MARK3-223	ENST00000561071	C2orf72	A6NCS6	295 aa		13.72	□□□□□ -0.21
MARK3-223	ENST00000561071	TMC2	Q8TDI7	906 aa		13.72	□□□□□ -0.21
MARK3-223	ENST00000561071	POTEJ	P0CG39	1038 aa		13.71	□□□□□ -0.21
MARK3-223	ENST00000561071	C3orf67	Q6ZVT6	689 aa		13.71	□□□□□ -0.21
MARK3-223	ENST00000561071	KCNV2	Q8TDN2	545 aa		13.71	□□□□□ -0.21
MARK3-223	ENST00000561071	KIF3C	O14782	793 aa		13.7	□□□□□ -0.22
MARK3-223	ENST00000561071	DSG2	Q14126	1118 aa		13.7	□□□□□ -0.22
MARK3-223	ENST00000561071	PPP1R15B	Q5SWA1	713 aa		13.69	□□□□□ -0.22
MARK3-223	ENST00000561071	E2F4	Q16254	413 aa		13.68	□□□□□ -0.22
MARK3-223	ENST00000561071	BCAN	Q96GW7	911 aa		13.66	□□□□□ -0.22
MARK3-223	ENST00000561071	FOXK1	P85037	733 aa		13.65	□□□□□ -0.22
MARK3-223	ENST00000561071	P3H3	Q8IVL6	736 aa		13.65	□□□□□ -0.22
MARK3-223	ENST00000561071	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.64	□□□□□ -0.23
MARK3-223	ENST00000561071	PLPP6	Q8IY26	295 aa		13.62	□□□□□ -0.23
MARK3-223	ENST00000561071	CAMK2B	Q13554	666 aa		13.6	□□□□□ -0.23
MARK3-223	ENST00000561071	NBR1	Q14596	966 aa		13.58	□□□□□ -0.24
MARK3-223	ENST00000561071	EMILIN3	Q9NT22	766 aa		13.56	□□□□□ -0.24
MARK3-223	ENST00000561071	ARHGEF1	Q92888	912 aa	Known RBP	13.55	□□□□□ -0.24
MARK3-223	ENST00000561071	NCAPD3	P42695	1498 aa		13.54	□□□□□ -0.24
MARK3-223	ENST00000561071	ATAD2B	Q9ULI0	1458 aa		13.53	□□□□□ -0.24
MARK3-223	ENST00000561071	SCUBE2	Q9NQ36	999 aa		13.52	□□□□□ -0.25
MARK3-223	ENST00000561071	SLAIN1	Q8ND83	568 aa		13.5	□□□□□ -0.25
MARK3-223	ENST00000561071	SMARCA4	P51532	1647 aa		13.5	□□□□□ -0.25
MARK3-223	ENST00000561071	MAMSTR	Q6ZN01	415 aa		13.49	□□□□□ -0.25
MARK3-223	ENST00000561071	DPYSL4	O14531	572 aa		13.48	□□□□□ -0.25
MARK3-223	ENST00000561071	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
MARK3-223	ENST00000561071	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.48	□□□□□ -0.25
MARK3-223	ENST00000561071	SMARCA2	P51531	1590 aa		13.45	□□□□□ -0.26
MARK3-223	ENST00000561071	SEMA3E	O15041	775 aa		13.44	□□□□□ -0.26
MARK3-223	ENST00000561071	LHX8	Q68G74	356 aa		13.44	□□□□□ -0.26
MARK3-223	ENST00000561071	OTUD5	Q96G74	571 aa		13.43	□□□□□ -0.26
MARK3-223	ENST00000561071	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.42	□□□□□ -0.26
MARK3-223	ENST00000561071	OXER1	Q8TDS5	423 aa		13.42	□□□□□ -0.26
MARK3-223	ENST00000561071	HMGXB3	Q12766	1538 aa		13.4	□□□□□ -0.26
MARK3-223	ENST00000561071	MAP3K9	P80192	1104 aa		13.4	□□□□□ -0.26
MARK3-223	ENST00000561071	MROH2B	Q7Z745	1585 aa		13.4	□□□□□ -0.26
MARK3-223	ENST00000561071	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.39	□□□□□ -0.27
MARK3-223	ENST00000561071	ERCC6	Q03468	1493 aa		13.38	□□□□□ -0.27
MARK3-223	ENST00000561071	PTCD2	Q8WV60	388 aa	Known RBP	13.38	□□□□□ -0.27
MARK3-223	ENST00000561071	NES	P48681	1621 aa		13.38	□□□□□ -0.27
MARK3-223	ENST00000561071	SLC34A2	O95436	690 aa		13.37	□□□□□ -0.27
MARK3-223	ENST00000561071	PDIA6	Q15084	440 aa		13.37	□□□□□ -0.27
MARK3-223	ENST00000561071	HOXB3	P14651	431 aa	Predicted RBP	13.36	□□□□□ -0.27
MARK3-223	ENST00000561071	TESPA1	A2RU30	521 aa	Predicted RBP	13.35	□□□□□ -0.27
MARK3-223	ENST00000561071	PEG3	Q9GZU2	1588 aa		13.33	□□□□□ -0.28
MARK3-223	ENST00000561071	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.33	□□□□□ -0.28
MARK3-223	ENST00000561071	MLLT3	P42568	568 aa	Predicted RBP	13.32	□□□□□ -0.28
MARK3-223	ENST00000561071	PCDHGA4	Q9Y5G9	962 aa		13.32	□□□□□ -0.28
MARK3-223	ENST00000561071	TBC1D12	O60347	775 aa		13.31	□□□□□ -0.28
MARK3-223	ENST00000561071	EVI5	O60447	810 aa		13.3	□□□□□ -0.28
MARK3-223	ENST00000561071	DOK7	Q18PE1	504 aa		13.3	□□□□□ -0.28
MARK3-223	ENST00000561071	CUX2	O14529	1486 aa		13.28	□□□□□ -0.28
MARK3-223	ENST00000561071	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
MARK3-223	ENST00000561071	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.27	□□□□□ -0.29	1e-6	■■□□□ 12.9
MARK3-223	ENST00000561071	ARSI	Q5FYB1	569 aa		13.25	□□□□□ -0.29
MARK3-223	ENST00000561071	LMOD2	Q6P5Q4	547 aa		13.24	□□□□□ -0.29
MARK3-223	ENST00000561071	ZNF710	Q8N1W2	664 aa		13.24	□□□□□ -0.29
MARK3-223	ENST00000561071	GRXCR2	A6NFK2	248 aa		13.23	□□□□□ -0.29
MARK3-223	ENST00000561071	RIMBP2	O15034	1052 aa		13.23	□□□□□ -0.29
MARK3-223	ENST00000561071	PRKCSH	P14314	528 aa	Predicted RBP	13.23	□□□□□ -0.29
MARK3-223	ENST00000561071	GPR153	Q6NV75	609 aa		13.23	□□□□□ -0.29
MARK3-223	ENST00000561071	DDX12P	Q92771	950 aa		13.23	□□□□□ -0.29
MARK3-223	ENST00000561071	WIZ	O95785	1651 aa		13.23	□□□□□ -0.29
MARK3-223	ENST00000561071	NUDT7	P0C024	238 aa		13.22	□□□□□ -0.29
MARK3-223	ENST00000561071	TPRN	Q4KMQ1	711 aa		13.22	□□□□□ -0.29
MARK3-223	ENST00000561071	KDM4F	A0A1W2PPD8	638 aa		13.21	□□□□□ -0.29
MARK3-223	ENST00000561071	TULP1	O00294	542 aa	Predicted RBP	13.21	□□□□□ -0.29
MARK3-223	ENST00000561071	SNPH	O15079	494 aa		13.21	□□□□□ -0.29
MARK3-223	ENST00000561071	SMYD5	Q6GMV2	418 aa		13.21	□□□□□ -0.29
MARK3-223	ENST00000561071	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.21	□□□□□ -0.29
MARK3-223	ENST00000561071	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.2	□□□□□ -0.3
MARK3-223	ENST00000561071	PTGER2	P43116	358 aa		13.2	□□□□□ -0.3
MARK3-223	ENST00000561071	ZSWIM6	Q9HCJ5	1215 aa		13.2	□□□□□ -0.3
MARK3-223	ENST00000561071	LAMC3	Q9Y6N6	1575 aa		13.19	□□□□□ -0.3
MARK3-223	ENST00000561071	RBM26	Q5T8P6	1007 aa	Known RBP	13.18	□□□□□ -0.3
MARK3-223	ENST00000561071	CADPS	Q9ULU8	1353 aa		13.16	□□□□□ -0.3
MARK3-223	ENST00000561071	THOC2	Q8NI27	1593 aa	Known RBP	13.15	□□□□□ -0.3
MARK3-223	ENST00000561071	KIF21A	Q7Z4S6	1674 aa		13.15	□□□□□ -0.31
MARK3-223	ENST00000561071	RSF1	Q96T23	1441 aa	Predicted RBP	13.14	□□□□□ -0.31

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