RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 KANK4Q5T7N3 995 aaPredicted RBP15.65■□□□□ 0.1
USP3-216ENST00000559873 CDC42BPAQ5VT25 1732 aa15.64■□□□□ 0.09
USP3-216ENST00000559873 EFCAB2Q5VUJ9 269 aa15.64■□□□□ 0.09
USP3-216ENST00000559873 GPATCH8Q9UKJ3 1502 aaKnown RBP15.63■□□□□ 0.09
USP3-216ENST00000559873 KDM6BO15054 1643 aa15.63■□□□□ 0.09
USP3-216ENST00000559873 CFDP1Q9UEE9 299 aaPredicted RBP15.61■□□□□ 0.09
USP3-216ENST00000559873 AKNAQ7Z591 1439 aa15.6■□□□□ 0.09
USP3-216ENST00000559873 CDC42BPBQ9Y5S2 1711 aa15.6■□□□□ 0.09
USP3-216ENST00000559873 ADGRL1O94910 1474 aa15.6■□□□□ 0.09
USP3-216ENST00000559873 MYOM3Q5VTT5 1437 aa15.6■□□□□ 0.09
USP3-216ENST00000559873 PLEKHH2Q8IVE3 1493 aa15.59■□□□□ 0.09
USP3-216ENST00000559873 MIA2Q96PC5 1412 aa15.58■□□□□ 0.08
USP3-216ENST00000559873 ABCC1P33527 1531 aa15.57■□□□□ 0.08
USP3-216ENST00000559873 DENND4BO75064 1496 aaPredicted RBP15.56■□□□□ 0.08
USP3-216ENST00000559873 SAMD9LQ8IVG5 1584 aa15.55■□□□□ 0.08
USP3-216ENST00000559873 ZNF777Q9ULD5 760 aaPredicted RBP15.55■□□□□ 0.08
USP3-216ENST00000559873 SCAPERQ9BY12 1400 aa15.54■□□□□ 0.08
USP3-216ENST00000559873 CAMSAP2Q08AD1 1489 aa15.53■□□□□ 0.08
USP3-216ENST00000559873 ZNF518AQ6AHZ1 1483 aa15.53■□□□□ 0.08
USP3-216ENST00000559873 POGZQ7Z3K3 1410 aa15.53■□□□□ 0.08
USP3-216ENST00000559873 KIAA1107Q9UPP5 1409 aa15.53■□□□□ 0.08
USP3-216ENST00000559873 SYCP2Q9BX26 1530 aa15.53■□□□□ 0.08
USP3-216ENST00000559873 FGD6Q6ZV73 1430 aa15.52■□□□□ 0.08
USP3-216ENST00000559873 COL17A1Q9UMD9 1497 aaPredicted RBP15.5■□□□□ 0.07
USP3-216ENST00000559873 ZMYM4Q5VZL5 1548 aa15.49■□□□□ 0.07
USP3-216ENST00000559873 RICTORQ6R327 1708 aa15.49■□□□□ 0.07
USP3-216ENST00000559873 PTPN23Q9H3S7 1636 aa15.49■□□□□ 0.07
USP3-216ENST00000559873 FRMPD1Q5SYB0 1578 aa15.49■□□□□ 0.07
USP3-216ENST00000559873 PPARGC1BQ86YN6 1023 aaKnown RBP15.48■□□□□ 0.07
USP3-216ENST00000559873 TCOF1Q13428 1488 aaKnown RBP15.47■□□□□ 0.07
USP3-216ENST00000559873 CCDC141Q6ZP82 1450 aa15.47■□□□□ 0.07
USP3-216ENST00000559873 KDM5CP41229 1560 aa15.47■□□□□ 0.07
USP3-216ENST00000559873 ARHGEF5Q12774 1597 aa15.47■□□□□ 0.07
USP3-216ENST00000559873 RSPH4AQ5TD94 716 aa15.47■□□□□ 0.07
USP3-216ENST00000559873 MAGI2Q86UL8 1455 aa15.46■□□□□ 0.07
USP3-216ENST00000559873 RAPGEF3O95398 923 aa15.46■□□□□ 0.07
USP3-216ENST00000559873 ARHGEF12Q9NZN5 1544 aa15.46■□□□□ 0.07
USP3-216ENST00000559873 HECW2Q9P2P5 1572 aa15.45■□□□□ 0.06
USP3-216ENST00000559873 ZNF644Q9H582 1327 aaPredicted RBP15.44■□□□□ 0.06
USP3-216ENST00000559873 TRAPPC8Q9Y2L5 1435 aa15.44■□□□□ 0.06
USP3-216ENST00000559873 MBD5Q9P267 1494 aa15.44■□□□□ 0.06
USP3-216ENST00000559873 ZFYVE16Q7Z3T8 1539 aa15.43■□□□□ 0.06
USP3-216ENST00000559873 ARHGEF40Q8TER5 1519 aa15.43■□□□□ 0.06
USP3-216ENST00000559873 HNRNPMP52272 730 aaKnown RBP eCLIP15.43■□□□□ 0.068e-7■■■■■ 27.1
USP3-216ENST00000559873 MLH3Q9UHC1 1453 aa15.42■□□□□ 0.06
USP3-216ENST00000559873 MYT1LQ9UL68 1186 aa15.42■□□□□ 0.06
USP3-216ENST00000559873 FAM50AQ14320 339 aaKnown RBP15.41■□□□□ 0.06
USP3-216ENST00000559873 AFAP1Q8N556 730 aa15.41■□□□□ 0.06
USP3-216ENST00000559873 RRBP1Q9P2E9 1410 aaKnown RBP15.41■□□□□ 0.06
USP3-216ENST00000559873 SPAG9O60271 1321 aaKnown RBP15.41■□□□□ 0.06
USP3-216ENST00000559873 SHANK2Q9UPX8 1470 aa15.4■□□□□ 0.06
USP3-216ENST00000559873 DNMT1P26358 1616 aaKnown RBP15.4■□□□□ 0.06
USP3-216ENST00000559873 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.4■□□□□ 0.063e-6■□□□□ 10.3
USP3-216ENST00000559873 ATP7AQ04656 1500 aa15.4■□□□□ 0.06
USP3-216ENST00000559873 TSPY4P0CV99 314 aa15.4■□□□□ 0.06
USP3-216ENST00000559873 TSPY10P0CW01 314 aa15.4■□□□□ 0.06
USP3-216ENST00000559873 INO80Q9ULG1 1556 aaPredicted RBP15.4■□□□□ 0.06
USP3-216ENST00000559873 CROCC2H7BZ55 1655 aa15.38■□□□□ 0.05
USP3-216ENST00000559873 RTEL1-TNFRSF6BF6WH68 1400 aa15.38■□□□□ 0.05
USP3-216ENST00000559873 DAPK1P53355 1430 aa15.38■□□□□ 0.05
USP3-216ENST00000559873 MAST1Q9Y2H9 1570 aa15.37■□□□□ 0.05
USP3-216ENST00000559873 C9orf84Q5VXU9 1444 aa15.37■□□□□ 0.05
USP3-216ENST00000559873 DIP2CQ9Y2E4 1556 aa15.36■□□□□ 0.05
USP3-216ENST00000559873 ABCC5O15440 1437 aa15.35■□□□□ 0.05
USP3-216ENST00000559873 YEATS2Q9ULM3 1422 aa15.35■□□□□ 0.05
USP3-216ENST00000559873 KIDINS220Q9ULH0 1771 aa15.35■□□□□ 0.05
USP3-216ENST00000559873 ABCA6Q8N139 1617 aa15.35■□□□□ 0.05
USP3-216ENST00000559873 ATP10AO60312 1499 aa15.34■□□□□ 0.05
USP3-216ENST00000559873 PLXNC1O60486 1568 aa15.33■□□□□ 0.05
USP3-216ENST00000559873 REREQ9P2R6 1566 aa15.33■□□□□ 0.05
USP3-216ENST00000559873 ADGBQ8N7X0 1667 aa15.32■□□□□ 0.04
USP3-216ENST00000559873 ANKRD30AQ9BXX3 1397 aa15.31■□□□□ 0.04
USP3-216ENST00000559873 ADGRL2O95490 1459 aa15.29■□□□□ 0.04
USP3-216ENST00000559873 A2MP01023 1474 aa15.29■□□□□ 0.04
USP3-216ENST00000559873 ARID4BQ4LE39 1312 aaPredicted RBP15.27■□□□□ 0.04
USP3-216ENST00000559873 AGLP35573 1532 aa15.27■□□□□ 0.03
USP3-216ENST00000559873 DUOX2Q9NRD8 1548 aa15.27■□□□□ 0.03
USP3-216ENST00000559873 ROCK1Q13464 1354 aa15.26■□□□□ 0.03
USP3-216ENST00000559873 KIF15Q9NS87 1388 aa15.26■□□□□ 0.03
USP3-216ENST00000559873 ITGAEP38570 1179 aa15.26■□□□□ 0.03
USP3-216ENST00000559873 DHX29Q7Z478 1369 aaKnown RBP15.25■□□□□ 0.03
USP3-216ENST00000559873 NCOA1Q15788 1441 aa15.25■□□□□ 0.03
USP3-216ENST00000559873 ERBINQ96RT1 1412 aa15.25■□□□□ 0.03
USP3-216ENST00000559873 CHIC2Q9UKJ5 165 aa15.24■□□□□ 0.03
USP3-216ENST00000559873 EIF2AK4Q9P2K8 1649 aaKnown RBP15.23■□□□□ 0.03
USP3-216ENST00000559873 PTPRKQ15262 1439 aa15.22■□□□□ 0.03
USP3-216ENST00000559873 RRP7BPQ9NSQ0 103 aa15.2■□□□□ 0.02
USP3-216ENST00000559873 BCORL1Q5H9F3 1711 aa15.2■□□□□ 0.02
USP3-216ENST00000559873 ANKRD50Q9ULJ7 1429 aa15.18■□□□□ 0.02
USP3-216ENST00000559873 FAM135AQ9P2D6 1515 aa15.18■□□□□ 0.02
USP3-216ENST00000559873 SIGLEC1Q9BZZ2 1709 aa15.18■□□□□ 0.02
USP3-216ENST00000559873 GCC2Q8IWJ2 1684 aa15.17■□□□□ 0.02
USP3-216ENST00000559873 HFM1A2PYH4 1435 aa15.17■□□□□ 0.02
USP3-216ENST00000559873 KIF3BO15066 747 aa15.16■□□□□ 0.02
USP3-216ENST00000559873 ESF1Q9H501 851 aaKnown RBP15.16■□□□□ 0.02
USP3-216ENST00000559873 RNF17Q9BXT8 1623 aaKnown RBP15.16■□□□□ 0.02
USP3-216ENST00000559873 MLECQ14165 292 aa15.15■□□□□ 0.02
USP3-216ENST00000559873 ADAMTSL3P82987 1691 aa15.14■□□□□ 0.01
USP3-216ENST00000559873 PPP6R1Q9UPN7 881 aa15.14■□□□□ 0.01
USP3-216ENST00000559873 CNTLNQ9NXG0 1405 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms