RNA–Protein interactions for RNA: ENST00000558428.5

SMAD3-205, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-205ENST00000558428 APLP2Q06481 763 aa19.45■□□□□ 0.7
SMAD3-205ENST00000558428 SUPT6HQ7KZ85 1726 aaKnown RBP19.44■□□□□ 0.7
SMAD3-205ENST00000558428 DENND4BO75064 1496 aaPredicted RBP19.43■□□□□ 0.7
SMAD3-205ENST00000558428 ADGRL1O94910 1474 aa19.43■□□□□ 0.7
SMAD3-205ENST00000558428 LRRC9Q6ZRR7 1453 aa19.43■□□□□ 0.7
SMAD3-205ENST00000558428 RAPGEF3O95398 923 aa19.43■□□□□ 0.7
SMAD3-205ENST00000558428 CCNB3Q8WWL7 1395 aa19.43■□□□□ 0.7
SMAD3-205ENST00000558428 GPATCH8Q9UKJ3 1502 aaKnown RBP19.41■□□□□ 0.7
SMAD3-205ENST00000558428 FRMPD1Q5SYB0 1578 aa19.4■□□□□ 0.7
SMAD3-205ENST00000558428 RICTORQ6R327 1708 aa19.4■□□□□ 0.7
SMAD3-205ENST00000558428 SCAPERQ9BY12 1400 aa19.4■□□□□ 0.7
SMAD3-205ENST00000558428 KANK4Q5T7N3 995 aaPredicted RBP19.39■□□□□ 0.69
SMAD3-205ENST00000558428 NCOA2Q15596 1464 aa19.39■□□□□ 0.69
SMAD3-205ENST00000558428 ITSN2Q9NZM3 1697 aa19.38■□□□□ 0.69
SMAD3-205ENST00000558428 CFDP1Q9UEE9 299 aaPredicted RBP19.36■□□□□ 0.69
SMAD3-205ENST00000558428 ZNF777Q9ULD5 760 aaPredicted RBP19.36■□□□□ 0.69
SMAD3-205ENST00000558428 POGZQ7Z3K3 1410 aa19.35■□□□□ 0.69
SMAD3-205ENST00000558428 ABCC1P33527 1531 aa19.35■□□□□ 0.69
SMAD3-205ENST00000558428 SAMD9LQ8IVG5 1584 aa19.33■□□□□ 0.69
SMAD3-205ENST00000558428 ZMYM4Q5VZL5 1548 aa19.31■□□□□ 0.68
SMAD3-205ENST00000558428 ZNF518AQ6AHZ1 1483 aa19.31■□□□□ 0.68
SMAD3-205ENST00000558428 ARHGEF12Q9NZN5 1544 aa19.3■□□□□ 0.68
SMAD3-205ENST00000558428 SYCP2Q9BX26 1530 aa19.29■□□□□ 0.68
SMAD3-205ENST00000558428 PLEKHH2Q8IVE3 1493 aa19.28■□□□□ 0.68
SMAD3-205ENST00000558428 AFAP1Q8N556 730 aa19.28■□□□□ 0.68
SMAD3-205ENST00000558428 TRAPPC8Q9Y2L5 1435 aa19.27■□□□□ 0.68
SMAD3-205ENST00000558428 ARHGEF40Q8TER5 1519 aa19.27■□□□□ 0.68
SMAD3-205ENST00000558428 MAGI2Q86UL8 1455 aa19.27■□□□□ 0.67
SMAD3-205ENST00000558428 KDM5CP41229 1560 aa19.27■□□□□ 0.67
SMAD3-205ENST00000558428 KIAA1107Q9UPP5 1409 aa19.26■□□□□ 0.67
SMAD3-205ENST00000558428 ZFYVE16Q7Z3T8 1539 aa19.26■□□□□ 0.67
SMAD3-205ENST00000558428 HNRNPMP52272 730 aaKnown RBP eCLIP19.26■□□□□ 0.672e-6■■□□□ 12.5
SMAD3-205ENST00000558428 ZNF644Q9H582 1327 aaPredicted RBP19.25■□□□□ 0.67
SMAD3-205ENST00000558428 YEATS2Q9ULM3 1422 aa19.25■□□□□ 0.67
SMAD3-205ENST00000558428 MYT1LQ9UL68 1186 aa19.24■□□□□ 0.67
SMAD3-205ENST00000558428 MYOM3Q5VTT5 1437 aa19.24■□□□□ 0.67
SMAD3-205ENST00000558428 HECW2Q9P2P5 1572 aa19.23■□□□□ 0.67
SMAD3-205ENST00000558428 CAMSAP2Q08AD1 1489 aa19.22■□□□□ 0.67
SMAD3-205ENST00000558428 MIA2Q96PC5 1412 aa19.2■□□□□ 0.66
SMAD3-205ENST00000558428 MLH3Q9UHC1 1453 aa19.2■□□□□ 0.66
SMAD3-205ENST00000558428 MBD5Q9P267 1494 aa19.18■□□□□ 0.66
SMAD3-205ENST00000558428 KIDINS220Q9ULH0 1771 aa19.18■□□□□ 0.66
SMAD3-205ENST00000558428 SPAG9O60271 1321 aaKnown RBP19.18■□□□□ 0.66
SMAD3-205ENST00000558428 KDM4FA0A1W2PPD8 638 aa19.17■□□□□ 0.66
SMAD3-205ENST00000558428 ARID4BQ4LE39 1312 aaPredicted RBP19.17■□□□□ 0.66
SMAD3-205ENST00000558428 ATP10AO60312 1499 aa19.16■□□□□ 0.66
SMAD3-205ENST00000558428 ABCA6Q8N139 1617 aa19.16■□□□□ 0.66
SMAD3-205ENST00000558428 DIP2CQ9Y2E4 1556 aa19.15■□□□□ 0.66
SMAD3-205ENST00000558428 C9orf84Q5VXU9 1444 aa19.15■□□□□ 0.66
SMAD3-205ENST00000558428 CCDC141Q6ZP82 1450 aa19.15■□□□□ 0.66
SMAD3-205ENST00000558428 PPARGC1BQ86YN6 1023 aaKnown RBP19.14■□□□□ 0.65
SMAD3-205ENST00000558428 FGD6Q6ZV73 1430 aa19.14■□□□□ 0.65
SMAD3-205ENST00000558428 ATP7AQ04656 1500 aa19.14■□□□□ 0.65
SMAD3-205ENST00000558428 PTPN23Q9H3S7 1636 aa19.14■□□□□ 0.65
SMAD3-205ENST00000558428 RSPH4AQ5TD94 716 aa19.13■□□□□ 0.65
SMAD3-205ENST00000558428 ARHGEF5Q12774 1597 aa19.13■□□□□ 0.65
SMAD3-205ENST00000558428 INO80Q9ULG1 1556 aaPredicted RBP19.13■□□□□ 0.65
SMAD3-205ENST00000558428 SIGLEC1Q9BZZ2 1709 aa19.13■□□□□ 0.65
SMAD3-205ENST00000558428 AEBP2Q6ZN18 517 aaPredicted RBP19.11■□□□□ 0.65
SMAD3-205ENST00000558428 BCORL1Q5H9F3 1711 aa19.11■□□□□ 0.65
SMAD3-205ENST00000558428 REREQ9P2R6 1566 aa19.09■□□□□ 0.65
SMAD3-205ENST00000558428 TSPY4P0CV99 314 aa19.08■□□□□ 0.64
SMAD3-205ENST00000558428 TSPY10P0CW01 314 aa19.08■□□□□ 0.64
SMAD3-205ENST00000558428 TCOF1Q13428 1488 aaKnown RBP19.08■□□□□ 0.64
SMAD3-205ENST00000558428 RTEL1-TNFRSF6BF6WH68 1400 aa19.08■□□□□ 0.64
SMAD3-205ENST00000558428 ADAMTSL3P82987 1691 aa19.07■□□□□ 0.64
SMAD3-205ENST00000558428 MLECQ14165 292 aa19.05■□□□□ 0.64
SMAD3-205ENST00000558428 ADGBQ8N7X0 1667 aa19.05■□□□□ 0.64
SMAD3-205ENST00000558428 A2MP01023 1474 aa19.03■□□□□ 0.64
SMAD3-205ENST00000558428 FAM50AQ14320 339 aaKnown RBP19.03■□□□□ 0.64
SMAD3-205ENST00000558428 AGLP35573 1532 aa19.03■□□□□ 0.64
SMAD3-205ENST00000558428 MADDQ8WXG6 1647 aa19.03■□□□□ 0.64
SMAD3-205ENST00000558428 MAST1Q9Y2H9 1570 aa19.02■□□□□ 0.64
SMAD3-205ENST00000558428 CROCC2H7BZ55 1655 aa19.02■□□□□ 0.64
SMAD3-205ENST00000558428 DNMT1P26358 1616 aaKnown RBP19.02■□□□□ 0.64
SMAD3-205ENST00000558428 ABCC5O15440 1437 aa19.01■□□□□ 0.63
SMAD3-205ENST00000558428 DAPK1P53355 1430 aa19■□□□□ 0.63
SMAD3-205ENST00000558428 PLXNC1O60486 1568 aa19■□□□□ 0.63
SMAD3-205ENST00000558428 FER1L4A9Z1Z3 1794 aa18.99■□□□□ 0.63
SMAD3-205ENST00000558428 RIMS1Q86UR5 1692 aaKnown RBP18.98■□□□□ 0.63
SMAD3-205ENST00000558428 SHANK2Q9UPX8 1470 aa18.98■□□□□ 0.63
SMAD3-205ENST00000558428 DHX29Q7Z478 1369 aaKnown RBP18.97■□□□□ 0.63
SMAD3-205ENST00000558428 PTPRMP28827 1452 aa18.95■□□□□ 0.62
SMAD3-205ENST00000558428 CHIC2Q9UKJ5 165 aa18.93■□□□□ 0.62
SMAD3-205ENST00000558428 GGT6Q6P531 493 aa18.91■□□□□ 0.62
SMAD3-205ENST00000558428 KIF3BO15066 747 aa18.9■□□□□ 0.62
SMAD3-205ENST00000558428 ESF1Q9H501 851 aaKnown RBP18.9■□□□□ 0.62
SMAD3-205ENST00000558428 RRP7BPQ9NSQ0 103 aa18.9■□□□□ 0.62
SMAD3-205ENST00000558428 ANKRD30AQ9BXX3 1397 aa18.9■□□□□ 0.62
SMAD3-205ENST00000558428 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.9■□□□□ 0.62
SMAD3-205ENST00000558428 KIF15Q9NS87 1388 aa18.9■□□□□ 0.62
SMAD3-205ENST00000558428 RRBP1Q9P2E9 1410 aaKnown RBP18.9■□□□□ 0.62
SMAD3-205ENST00000558428 DUOX2Q9NRD8 1548 aa18.9■□□□□ 0.62
SMAD3-205ENST00000558428 PLPPR3Q6T4P5 718 aa18.89■□□□□ 0.61
SMAD3-205ENST00000558428 ADGRL2O95490 1459 aa18.87■□□□□ 0.61
SMAD3-205ENST00000558428 EIF2AK4Q9P2K8 1649 aaKnown RBP18.86■□□□□ 0.61
SMAD3-205ENST00000558428 PTPRKQ15262 1439 aa18.86■□□□□ 0.61
SMAD3-205ENST00000558428 NCOA1Q15788 1441 aa18.86■□□□□ 0.61
SMAD3-205ENST00000558428 ITGAEP38570 1179 aa18.86■□□□□ 0.61
SMAD3-205ENST00000558428 CNTLNQ9NXG0 1405 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms